Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HN4	0246	2024-09-23	2018-09-14	4.2	4.43	—	4.1	0.007	1.50	2.0	0.07	9.90	0.01	2.187	6.18	0.00	6.9	91.4	1.8	-2.18	0.73	0.70	—	4.2	0.004	0.72	0.0	0.05	11.56	0.00	2.524	9.67	0.00	7.7	92.3	0.0	-0.32	1.13	0.76	0.78	—	5702	700	3	0	6	0	0	logfile
✔	6VQQ	21354	2024-09-25	2020-02-05	2.56	2.99	—	3.0	0.006	0.77	0.0	0.08	13.93	0.00	1.916	10.42	0.09	5.8	94.2	0.0	-3.82	0.56	0.73	3.45	3.0	0.004	0.63	0.0	0.04	16.44	0.00	2.471	8.70	3.22	3.3	96.7	0.0	0.65	1.21	0.56	0.76	2.81	10987	1399	5	0	0	0	0	logfile
✔	7R9K	24328	2024-09-24	2021-06-29	4.1	4.93	—	4.0	0.002	0.35	0.0	0.04	4.65	0.00	2.223	3.24	0.00	10.3	89.1	0.6	-4.05	0.83	0.71	—	4.1	0.003	0.54	0.0	0.04	8.46	0.00	2.435	6.09	0.00	4.8	95.2	0.0	-0.21	1.78	0.89	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	6M1i	30048	2024-09-24	2020-02-26	3.5	3.33	—	3.2	0.008	0.97	0.0	0.06	15.40	0.01	2.210	8.41	0.32	7.1	92.9	0.0	-4.80	0.83	0.80	1.81	3.2	0.003	0.75	0.0	0.04	16.58	0.00	2.357	9.71	2.42	5.0	95.0	0.0	-1.19	1.31	0.82	0.80	1.00	8916	1126	6	0	0	0	0	logfile
✔	6JT0	9883	2024-09-24	2019-04-08	4.0	4.28	—	4.0	0.004	0.71	0.0	0.04	12.21	0.00	2.212	11.03	4.73	5.7	93.9	0.4	-2.84	0.85	0.82	—	4.0	0.004	1.06	1.0	0.05	13.91	0.00	1.860	12.57	2.09	3.9	96.1	0.0	0.35	1.27	0.86	0.82	—	8602	1118	3	0	1	0	0	logfile
✔	7N8P	24241	2024-09-24	2021-06-15	3.42	3.72	—	3.7	0.005	0.89	0.0	0.05	14.42	0.01	2.276	4.27	0.29	5.9	94.1	0.0	-5.50	0.73	0.80	1.99	3.7	0.003	0.62	0.0	0.04	15.48	0.00	2.568	7.01	1.77	4.6	95.4	0.0	-0.38	0.38	0.69	0.84	1.03	6758	900	2	0	0	0	0	logfile
✔	7R0Z	14225	2024-09-24	2022-02-02	3.5	3.71	3.51	3.7	0.005	0.64	0.0	0.05	13.56	0.01	2.203	3.78	0.00	2.5	97.5	0.0	0.47	0.74	0.82	2.38	3.7	0.003	0.57	0.0	0.04	15.11	0.00	2.563	2.89	0.95	2.2	97.8	0.0	1.17	0.33	0.74	0.81	1.94	6891	839	4	0	9	0	0	logfile
✔	6L48	0832	2024-09-24	2019-10-16	3.5	3.71	—	3.7	0.003	0.76	2.0	0.05	12.00	0.01	2.217	10.02	2.45	6.6	93.4	0.0	-3.38	0.64	0.74	1.87	3.7	0.003	0.72	0.0	0.04	15.73	0.01	2.519	8.78	5.81	5.5	94.5	0.0	0.06	0.67	0.66	0.72	1.72	6528	794	4	0	2	0	0	logfile
✔	7Ro0	24584	2024-09-24	2021-07-30	3.75	3.86	—	3.8	0.008	1.03	0.0	0.06	14.95	0.01	2.202	5.07	0.74	6.3	93.7	0.0	-5.18	0.69	0.84	1.25	3.8	0.003	0.65	0.0	0.04	16.06	0.00	2.446	5.58	3.40	4.1	95.9	0.0	-0.44	0.45	0.66	0.83	0.49	6742	898	2	0	0	0	0	logfile
✔	7Q0A	13742	2024-09-30	2021-10-14	4.8	5.34	—	4.9	0.003	0.58	0.0	0.05	11.43	0.00	2.216	4.45	0.34	3.9	96.1	0.1	-0.52	0.78	0.63	—	4.9	0.003	0.64	0.0	0.04	11.60	0.00	2.402	10.99	0.00	2.9	97.1	0.0	0.26	0.86	0.83	0.75	—	25125	3193	19	0	49	0	0	logfile
✔	7JNA	22403	2024-09-24	2020-08-04	3.6	3.74	—	3.8	0.005	0.72	0.0	0.05	12.95	0.03	2.028	12.10	0.00	4.3	95.7	0.0	-3.83	0.63	0.71	1.86	3.8	0.004	0.67	0.0	0.05	15.43	0.00	2.408	9.42	4.41	3.6	96.4	0.0	-0.80	1.37	0.69	0.78	2.45	6432	834	9	0	15	0	0	logfile
✔	7R10	14226	2024-09-25	2022-02-02	4.0	4.22	3.99	3.9	0.003	0.52	0.0	0.04	13.31	0.00	2.131	6.97	0.47	3.6	96.4	0.0	0.67	0.90	0.83	—	3.9	0.002	0.51	0.0	0.04	14.19	0.00	2.162	5.82	0.94	2.9	97.1	0.0	0.66	0.48	0.90	0.84	—	9823	1210	4	0	8	0	0	logfile
✔	7VFD	31949	2024-09-26	2021-09-13	2.25	2.33	2.21	2.3	0.004	0.53	0.0	0.05	12.47	0.00	2.204	3.62	0.60	3.7	96.3	0.0	-0.65	0.81	0.88	6.01	2.3	0.002	0.51	0.0	0.05	15.17	0.00	2.500	2.76	0.73	1.9	98.1	0.0	0.41	1.13	0.80	0.89	5.51	13262	1623	6	0	0	350	0	logfile
✔	7EK3	31167	2024-09-26	2021-04-03	2.7	2.73	2.64	2.7	0.018	1.85	5.0	0.08	14.91	0.01	2.231	2.51	1.66	0.6	99.4	0.0	-0.56	0.65	0.85	3.26	2.7	0.003	0.58	0.0	0.04	16.82	0.00	2.509	3.93	1.99	1.5	98.5	0.0	2.70	0.42	0.72	0.88	1.85	13505	1705	5	0	0	0	0	logfile
✔	7BoU	30134	2024-09-23	2020-03-19	3.6	3.75	—	3.7	0.007	1.27	0.0	0.06	12.07	0.01	2.311	7.57	0.92	7.1	91.6	1.3	-5.82	0.79	0.82	2.04	3.7	0.003	0.85	0.0	0.04	16.36	0.00	2.450	11.65	3.36	8.2	91.5	0.3	-0.42	2.01	0.80	0.83	1.22	48708	6300	12	0	0	0	0	logfile
✔	7R1Y	14243	2024-09-23	2022-02-03	3.0	3.01	2.95	3.0	0.002	0.52	0.0	0.04	13.13	0.00	2.252	6.47	3.44	2.9	97.1	0.0	0.36	0.72	0.71	2.29	3.0	0.004	0.68	0.0	0.05	16.40	0.00	2.492	12.24	3.60	4.1	95.9	0.0	0.63	1.13	0.74	0.74	2.24	5704	723	1	0	0	0	0	logfile
✔	6PZi	20535	2024-09-24	2019-07-31	4.5	4.80	—	4.4	0.005	1.13	0.0	0.05	9.01	0.01	2.253	2.60	0.00	6.3	93.7	0.0	-3.83	0.67	0.80	—	4.4	0.002	0.65	0.0	0.04	8.23	0.00	2.567	3.54	0.00	3.0	97.0	0.0	2.30	0.52	0.67	0.83	—	7985	1412	2	0	1	0	0	logfile
✔	7R11	14227	2024-09-24	2022-02-02	3.5	3.66	3.48	3.7	0.004	0.56	0.0	0.05	11.82	0.00	2.261	4.32	0.54	3.4	96.6	0.0	0.15	0.69	0.75	2.31	3.7	0.003	0.62	0.0	0.04	14.10	0.00	2.350	4.69	1.36	3.5	96.5	0.0	0.17	2.46	0.70	0.75	1.62	6870	837	4	0	8	0	0	logfile
✔	7PTX	13642	2024-09-24	2021-09-27	4.03	4.17	—	3.9	0.003	0.76	0.0	0.05	14.08	0.01	2.202	19.18	0.00	10.6	89.4	0.0	-1.97	0.84	0.72	—	3.9	0.004	0.80	0.0	0.05	14.46	0.00	2.400	17.40	0.00	10.2	89.8	0.0	-1.59	0.57	0.85	0.74	—	7653	1000	1	0	0	0	0	logfile
✔	7XJi	33228	2024-09-24	2022-04-18	3.9	3.60	3.70	3.9	0.003	0.60	0.0	0.04	13.92	0.00	2.165	9.02	0.00	4.3	95.7	0.0	-0.25	0.61	0.78	2.35	3.9	0.003	0.59	0.0	0.04	15.66	0.00	2.450	7.93	2.45	3.3	96.7	0.0	0.49	1.27	0.64	0.79	1.44	7851	1027	6	0	1	0	0	logfile

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