Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VAB	21135	2024-09-23	2019-12-17	4.9	6.51	—	6.8	0.005	0.91	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.6	0.002	0.63	0.0	0.04	4.29	0.00	2.555	1.33	0.00	4.4	95.6	0.0	0.08	1.87	0.72	0.67	—	4642	938	4	0	0	0	0	logfile
✔	6LN5	0924	2024-09-24	2019-12-28	2.8	2.93	2.78	2.9	0.005	0.63	0.0	0.04	12.83	0.00	2.027	5.32	0.12	2.0	98.0	0.0	-4.16	0.68	0.83	3.56	2.9	0.003	0.57	0.0	0.04	16.25	0.00	2.197	4.82	2.43	1.9	98.1	0.0	0.99	0.42	0.68	0.85	2.88	7840	1011	2	0	4	0	0	logfile
✔	7U1E	26299	2024-09-28	2022-02-21	4.52	4.53	—	4.5	0.001	0.42	0.0	0.04	12.91	0.00	2.240	5.36	2.68	3.6	96.4	0.0	-1.42	0.60	0.73	—	4.4	0.004	0.71	0.0	0.05	12.58	0.00	2.400	11.05	0.07	5.4	94.6	0.0	0.01	0.62	0.62	0.76	—	18366	2741	9	0	6	0	0	logfile
✔	6ZN2	11309	2024-09-25	2020-07-06	4.3	2.35	1.71	4.5	0.004	0.93	0.0	0.04	15.06	0.01	2.001	21.27	6.35	4.3	95.7	0.0	-1.42	0.74	0.77	—	4.5	0.004	0.86	0.0	0.05	14.60	0.01	2.061	17.43	0.00	4.9	95.1	0.0	-1.70	1.81	0.73	0.74	—	11320	1412	12	0	8	0	0	logfile
✔	6R81	4749	2024-09-24	2019-03-30	3.9	4.63	—	4.4	0.011	1.50	6.0	0.07	16.77	0.01	1.538	14.26	1.25	11.5	88.1	0.4	-5.27	0.71	0.82	1.01	4.4	0.004	0.89	0.0	0.05	17.90	0.00	1.875	12.98	3.53	10.3	89.7	0.0	-1.04	2.22	0.69	0.81	0.70	8861	1141	4	0	4	0	0	logfile
✔	8HJ2	33481	2024-09-24	2022-11-22	3.8	3.53	3.77	3.5	0.007	1.20	0.0	0.07	13.41	0.01	2.242	5.80	0.00	4.9	95.1	0.0	-2.19	0.59	0.75	1.57	3.5	0.003	0.67	0.0	0.04	15.96	0.00	2.515	9.20	3.48	3.8	96.2	0.0	0.71	0.52	0.58	0.74	0.94	7467	1027	5	0	0	0	0	logfile
✔	7KoG	22975	2024-09-28	2020-11-09	4.25	3.30	—	6.0	0.005	1.03	1.0	0.04	18.29	0.00	1.580	10.26	0.70	0.5	99.5	0.0	-6.22	0.69	0.62	—	4.0	0.003	0.71	0.0	0.04	16.84	0.00	2.401	9.00	0.00	0.4	99.6	0.0	2.99	1.90	0.75	0.75	—	17384	2154	2	0	0	0	0	logfile
✔	6iAW	4440	2024-09-29	2018-11-27	3.8	3.45	—	4.0	0.008	1.27	0.0	0.07	12.85	0.01	1.440	9.19	1.42	11.7	88.1	0.2	-4.49	0.81	0.81	2.63	3.9	0.004	0.93	0.0	0.05	15.60	0.00	2.370	16.08	4.17	11.4	88.6	0.0	-2.48	1.29	0.82	0.82	2.37	21929	2579	18	0	210	0	0	logfile
✔	6AYG	7020	2024-09-25	2017-09-08	4.65	4.76	—	4.6	0.013	1.56	0.0	0.07	11.75	0.01	2.180	19.94	1.09	7.7	91.9	0.5	-4.34	0.84	0.80	—	4.6	0.002	0.58	0.0	0.04	10.71	0.00	2.592	1.56	0.00	3.0	97.0	0.0	1.80	0.86	0.83	0.79	—	10456	1756	4	0	0	0	0	logfile
✔	7BZ2	30249	2024-09-24	2020-04-26	3.82	3.99	—	3.9	0.004	0.68	0.0	0.05	15.12	0.00	2.101	12.35	0.00	10.2	89.8	0.0	-6.04	0.73	0.79	2.10	3.9	0.003	0.69	0.0	0.04	16.81	0.00	2.519	7.77	3.00	4.4	95.6	0.0	-2.37	1.59	0.71	0.77	1.32	7393	978	6	0	1	0	0	logfile
✔	3KTT	5148	2024-09-23	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.004	1.16	0.0	0.05	17.38	0.01	2.322	25.05	3.91	9.2	89.8	1.0	-2.48	1.77	0.31	0.41	—	3855	513	1	0	0	0	0	logfile
✔	6V4U	21048	2024-09-24	2019-12-01	3.8	4.31	—	4.1	0.002	0.47	0.0	0.04	9.64	0.00	2.273	4.54	0.00	6.1	93.9	0.0	-3.58	0.73	0.61	1.20	4.1	0.004	0.85	0.0	0.05	13.76	0.01	2.563	13.47	4.68	14.8	85.2	0.0	-2.23	0.90	0.77	0.69	1.46	7074	1106	3	0	0	0	0	logfile
✔	7EFD	31084	2024-09-23	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.32	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.004	0.76	0.0	0.05	14.63	0.00	2.592	3.49	0.00	4.0	96.0	0.0	0.85	0.48	0.80	0.84	6.22	4004	480	8	0	4	156	0	logfile
✔	6WCB	21605	2024-09-26	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.004	0.54	0.0	0.04	15.42	0.00	2.356	3.10	1.13	2.1	97.9	0.0	2.81	1.28	0.54	0.79	2.44	11647	734	6	0	7	40	5904	logfile
✔	7CKM	30388	2024-09-26	2020-07-17	3.37	3.45	—	3.4	0.003	0.58	1.0	0.04	14.02	0.00	2.250	7.29	3.56	8.6	91.4	0.0	-2.94	0.75	0.81	2.53	3.4	0.003	0.61	0.0	0.04	16.31	0.00	2.185	6.03	3.76	7.7	92.3	0.0	-0.45	0.46	0.75	0.83	1.83	13114	1652	4	0	5	0	0	logfile
✔	7R1D	14239	2024-09-23	2022-02-02	3.5	3.51	—	3.5	0.005	0.80	0.0	0.05	13.61	0.01	2.097	17.88	0.00	7.1	92.9	0.0	-1.31	0.77	0.79	2.64	3.5	0.003	0.79	0.0	0.05	16.01	0.00	2.508	12.67	2.11	6.0	94.0	0.0	-0.95	1.23	0.76	0.78	1.70	5183	653	3	0	0	0	0	logfile
✔	7JPT	22422	2024-09-25	2020-08-09	3.2	3.54	3.50	3.5	0.002	0.55	0.0	0.04	15.00	0.00	2.267	8.72	3.48	6.8	93.2	0.1	-4.02	0.66	0.71	2.64	3.5	0.003	0.68	0.0	0.04	15.49	0.00	2.407	9.03	5.46	7.1	92.9	0.0	-2.33	0.54	0.71	0.77	2.81	10220	1327	3	0	5	0	0	logfile
✔	7R9E	24324	2024-09-24	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.003	0.63	0.0	0.04	9.41	0.00	2.404	7.64	0.00	6.0	94.0	0.0	-0.48	2.08	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	7UWF	26831	2024-09-26	2022-05-03	2.7	2.78	2.77	2.7	0.004	0.62	0.0	0.04	12.06	0.01	2.127	6.27	0.00	3.0	97.0	0.0	1.46	0.77	0.82	2.47	2.7	0.003	0.61	0.0	0.04	15.51	0.00	2.504	6.61	1.46	3.0	97.0	0.0	2.07	0.38	0.78	0.84	2.60	13174	1760	4	0	0	0	0	logfile
✔	6L2T	0814	2024-09-26	2019-10-06	4.1	4.14	—	4.2	0.003	0.61	0.0	0.05	12.33	0.00	2.222	5.89	0.15	13.8	86.0	0.2	-5.72	0.61	0.76	—	4.2	0.003	0.72	0.0	0.05	12.75	0.01	2.405	5.70	0.00	12.7	87.3	0.1	-3.91	0.49	0.60	0.76	—	13604	1889	3	0	0	0	0	logfile

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