Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TWi	41668	2024-09-24	2023-08-21	2.69	3.44	2.68	3.2	0.002	0.46	0.0	0.04	9.78	0.00	2.049	1.24	0.67	2.2	97.8	0.0	1.15	0.77	0.81	4.65	3.2	0.003	0.58	0.0	0.04	12.70	0.00	1.975	5.44	0.22	3.0	97.0	0.0	1.68	1.78	0.77	0.84	4.08	8096	510	4	0	2	0	4023	logfile
✔	8T07	40937	2024-09-24	2023-05-31	3.38	3.84	3.51	3.8	0.014	1.71	0.0	0.08	12.73	0.00	2.368	0.90	0.27	3.8	96.2	0.0	-1.32	0.52	0.76	2.89	3.8	0.003	0.61	0.0	0.04	14.84	0.00	2.567	6.79	1.23	2.1	97.9	0.0	1.05	0.55	0.65	0.83	1.34	6710	852	8	0	2	0	0	logfile
✔	8iM7	35572	2024-09-25	2023-03-06	3.4	3.70	3.43	3.6	0.010	1.06	0.0	0.06	14.52	0.01	2.245	3.77	0.90	6.7	93.3	0.0	-4.06	0.66	0.83	3.90	3.6	0.004	0.64	0.0	0.04	13.96	0.00	2.505	6.35	2.62	4.8	95.2	0.0	0.27	1.27	0.66	0.85	2.52	10587	1289	13	0	25	0	0	logfile
✔	8FTi	29433	2024-09-24	2023-01-12	3.5	3.80	3.64	3.7	0.002	0.56	0.0	0.03	18.08	0.00	2.237	9.26	4.55	4.5	95.5	0.0	0.23	0.77	0.75	2.02	3.7	0.004	0.63	0.0	0.04	18.97	0.00	2.492	8.34	5.17	5.8	94.2	0.0	0.26	0.47	0.76	0.77	2.12	8126	737	2	97	0	0	0	logfile
✔	8HNM	34916	2024-09-24	2022-12-08	2.94	3.31	2.90	3.2	0.003	0.60	0.0	0.04	15.74	0.00	2.223	8.44	0.53	5.0	95.0	0.0	0.38	0.75	0.86	2.12	3.2	0.003	0.63	0.0	0.04	16.38	0.00	2.535	4.90	2.65	5.1	94.9	0.0	0.47	0.34	0.77	0.88	2.07	8784	1117	6	0	3	0	0	logfile
✔	8PM6	17758	2024-09-24	2023-06-28	3.22	3.42	3.06	3.4	0.005	0.80	1.0	0.05	18.41	0.01	2.200	14.16	0.42	4.8	95.2	0.0	0.94	0.49	0.75	1.34	3.4	0.003	0.57	0.0	0.04	16.65	0.00	2.531	7.57	4.32	4.5	95.5	0.0	1.61	1.87	0.56	0.80	1.35	7029	872	2	0	9	0	0	logfile
✔	8EiJ	28158	2024-09-24	2022-09-15	3.34	3.70	3.35	3.7	0.003	0.73	1.0	0.04	15.17	0.00	2.172	9.51	0.38	5.6	94.4	0.0	-1.92	0.64	0.68	1.97	3.6	0.003	0.60	0.0	0.04	16.29	0.00	2.396	6.34	2.30	5.3	94.7	0.0	-1.11	0.35	0.67	0.71	1.73	7813	1017	7	0	6	0	0	logfile
✔	8CA9	16521	2024-09-28	2023-01-24	2.29	2.19	2.27	2.2	0.003	0.56	0.0	0.04	14.41	0.00	2.021	2.73	0.00	1.2	98.8	0.0	0.94	0.71	0.84	5.01	2.2	0.003	0.57	0.0	0.04	14.86	0.00	1.931	1.60	0.87	2.1	97.9	0.0	1.25	2.47	0.73	0.87	5.17	70679	4074	27	0	69	2107	33094	logfile
✔	8QCB	18328	2024-09-25	2023-08-25	2.8	2.99	2.84	3.0	0.002	0.45	0.0	0.04	12.78	0.00	2.288	3.19	0.00	2.5	97.5	0.0	1.02	0.61	0.76	3.54	3.0	0.002	0.50	0.0	0.04	15.52	0.00	2.484	3.42	1.97	2.2	97.8	0.0	1.23	0.90	0.75	0.88	2.83	11423	1506	5	0	0	0	0	logfile
✔	8UUZ	42602	2024-09-23	2023-11-02	3.77	4.50	3.78	8.8	0.003	0.73	0.0	0.04	13.06	0.00	2.213	38.18	12.61	6.6	93.4	0.0	-1.81	0.61	0.33	0.27	8.5	0.004	0.93	0.0	0.05	16.67	0.00	2.504	33.61	3.48	6.6	93.4	0.0	-1.96	1.36	0.75	0.56	0.90	2258	300	2	0	0	0	0	logfile
✔	8C82	16469	2024-09-29	2023-01-18	3.4	3.85	3.56	3.8	0.003	0.62	0.0	0.04	17.02	0.00	2.108	4.64	0.09	3.0	97.0	0.0	0.90	0.70	0.81	2.29	3.8	0.004	0.62	0.0	0.05	16.06	0.00	2.568	3.08	1.90	4.7	95.3	0.0	0.98	0.46	0.71	0.84	2.13	21070	2618	12	0	6	0	0	logfile
✔	8FMV	29297	2024-09-29	2022-12-24	3.34	2.46	—	1.9	0.007	0.86	0.0	0.04	19.29	0.01	2.200	6.02	0.10	6.1	93.9	0.0	0.37	0.80	0.82	2.31	1.9	0.003	0.50	0.0	0.04	17.57	0.00	1.860	7.80	1.53	5.4	94.5	0.1	0.80	0.93	0.80	0.83	2.24	20441	1234	4	0	25	0	9940	logfile
✔	8FHK	29087	2024-09-28	2022-12-14	2.9	2.20	—	1.7	0.008	1.17	1.0	0.06	18.88	0.02	2.200	7.55	0.39	7.0	93.0	0.0	-1.60	0.73	0.68	1.79	1.7	0.003	0.63	0.0	0.04	18.05	0.01	1.801	10.59	1.64	7.9	92.1	0.0	-0.70	1.31	0.75	0.73	1.87	19947	1219	4	0	20	0	9827	logfile
✔	8Q6o	18191	2024-09-24	2023-08-14	3.14	3.54	3.31	3.5	0.003	0.49	0.0	0.04	13.86	0.00	2.232	4.96	0.03	2.4	97.6	0.0	0.77	0.66	0.81	2.60	3.5	0.004	0.66	1.0	0.04	15.79	0.00	2.008	6.23	1.38	3.3	96.7	0.0	0.90	0.79	0.70	0.85	2.40	51983	6454	34	0	10	0	0	logfile
✔	8U89	42018	2024-09-25	2023-09-16	3.3	3.66	3.52	3.7	0.003	0.70	0.0	0.04	16.18	0.01	2.091	8.51	0.54	2.4	97.6	0.0	0.98	0.67	0.79	1.47	3.7	0.003	0.59	0.0	0.04	16.93	0.00	2.135	7.50	2.27	2.5	97.5	0.0	1.49	1.14	0.68	0.80	1.43	9928	1241	4	0	2	0	0	logfile
✔	8EQF	28537	2024-09-23	2022-10-07	3.16	2.26	3.09	2.1	0.005	0.57	0.0	0.04	14.57	0.00	1.998	5.82	0.00	5.5	94.5	0.0	-0.38	0.75	0.81	3.52	2.0	0.002	0.56	0.0	0.04	14.12	0.00	2.422	4.44	1.10	2.9	97.1	0.0	0.04	0.87	0.76	0.81	3.59	3348	422	4	0	2	0	0	logfile
✔	9FAA	50270	2024-09-24	2024-05-10	3.6	3.34	3.60	3.9	0.010	1.10	0.0	0.05	11.73	0.01	2.020	10.96	0.00	1.7	98.3	0.0	-4.21	0.52	0.75	3.32	3.9	0.003	0.66	0.0	0.05	13.28	0.00	2.471	6.73	1.84	6.2	93.8	0.0	-4.00	1.11	0.52	0.75	2.81	8695	590	10	0	5	0	4235	logfile
✔	8JZN	36748	2024-09-26	2023-07-05	2.47	2.92	2.74	2.9	0.019	1.12	0.0	0.08	21.23	0.00	1.784	9.87	1.91	4.2	95.8	0.0	-2.06	0.61	0.79	3.69	2.9	0.003	0.60	0.0	0.04	16.57	0.00	2.467	6.52	2.22	3.5	96.5	0.0	1.16	1.55	0.57	0.77	2.95	12831	1489	3	0	20	0	0	logfile
✔	8PHW	17677	2024-09-23	2023-06-20	3.6	2.46	3.63	2.1	0.005	0.72	0.0	0.04	12.28	0.01	2.209	10.93	6.20	7.5	92.5	0.0	-3.65	0.72	0.72	2.10	2.1	0.003	0.66	0.0	0.04	14.39	0.00	2.589	7.75	4.82	6.0	94.0	0.0	-0.36	0.68	0.71	0.72	2.02	5359	689	5	0	2	0	0	logfile
✔	8QA6	18300	2024-09-28	2023-08-22	2.91	3.22	3.02	3.2	0.010	1.08	0.0	0.10	17.51	0.01	2.072	6.69	0.52	3.4	96.6	0.0	-0.54	0.60	0.80	3.35	3.2	0.003	0.58	0.0	0.04	17.62	0.00	2.359	5.57	1.25	2.3	97.7	0.0	1.76	0.92	0.61	0.81	2.97	17808	1106	4	0	6	0	8720	logfile

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