Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8U2B	41844	2024-09-25	2023-09-05	0.86	3.74	2.85	3.4	0.011	1.83	0.0	0.08	9.63	0.01	2.506	0.50	0.00	2.4	97.6	0.0	0.09	0.80	0.85	5.79	3.4	0.003	0.58	0.0	0.03	13.70	0.00	2.598	10.04	2.79	2.0	98.0	0.0	4.66	1.04	0.83	0.93	3.07	11396	1665	37	0	0	0	0	logfile
✔	9ERM	19926	2024-09-23	2024-03-24	2.3	2.49	2.28	2.5	0.009	1.43	0.0	0.09	11.15	0.01	2.641	0.85	3.03	4.1	95.9	0.0	-2.04	0.45	0.94	7.10	2.5	0.002	0.62	0.0	0.05	16.47	0.00	2.640	3.07	1.52	2.5	97.5	0.0	-1.27	0.54	0.43	0.93	6.40	2870	375	5	0	0	0	0	logfile
✔	8ZWL	60532	2024-09-23	2024-06-13	3.4	3.16	3.10	3.5	0.008	0.92	0.0	0.06	11.35	0.00	2.273	8.06	0.00	5.4	94.6	0.0	-4.31	0.30	0.81	4.89	3.4	0.006	0.75	0.0	0.05	13.97	0.00	2.607	5.80	2.53	6.3	93.7	0.0	-3.25	0.57	0.33	0.85	4.75	3468	456	6	0	0	0	0	logfile
✔	8RTB	19485	2024-09-26	2024-01-25	3.83	4.65	3.83	4.1	0.006	0.79	0.0	0.05	14.19	0.01	2.126	12.18	0.00	6.7	93.3	0.0	-1.38	0.63	0.65	1.25	4.1	0.006	0.88	0.0	0.05	16.06	0.01	2.396	18.43	2.33	5.1	94.9	0.0	-0.38	1.75	0.70	0.85	1.12	14132	1804	9	0	0	0	0	logfile
✔	8VT2	43516	2024-09-25	2024-01-25	3.14	3.48	3.27	3.5	0.014	0.96	0.0	0.06	15.92	0.01	2.144	7.00	0.00	7.7	92.3	0.0	-1.30	0.72	0.84	3.85	3.5	0.004	0.60	0.0	0.05	14.23	0.00	2.520	3.97	1.03	5.5	94.5	0.0	0.03	0.28	0.65	0.81	3.29	10674	1362	12	0	18	0	0	logfile
✔	8TSR	41599	2024-09-24	2023-08-11	3.9	4.25	3.96	4.2	0.005	0.83	0.0	0.05	16.02	0.01	2.219	11.20	0.51	3.2	96.8	0.0	0.80	0.71	0.76	0.88	4.2	0.003	0.77	0.0	0.04	17.18	0.00	2.543	9.71	3.69	3.3	96.7	0.0	1.63	1.21	0.70	0.76	0.88	8888	1146	2	0	0	0	0	logfile
✔	8HFF	34719	2024-09-23	2022-11-10	2.86	3.35	2.95	3.3	0.004	0.54	0.0	0.04	16.02	0.00	2.142	6.04	1.08	2.8	97.2	0.0	1.96	0.54	0.78	3.07	3.3	0.003	0.52	0.0	0.04	16.05	0.00	2.524	4.78	1.74	2.4	97.6	0.0	2.06	1.13	0.49	0.75	2.57	4399	547	2	0	2	2	0	logfile
✔	8XoA	38524	2024-09-23	2023-12-31	3.03	3.24	3.01	3.3	0.007	1.00	1.0	0.06	11.52	0.01	2.346	6.05	0.00	1.3	98.7	0.0	0.90	0.57	0.77	2.21	3.3	0.003	0.66	0.0	0.04	13.69	0.01	2.577	5.86	1.45	2.4	97.6	0.0	2.17	0.32	0.55	0.78	1.69	2713	376	2	0	1	0	0	logfile
✔	8Z1E	39724	2024-09-24	2024-04-11	3.12	3.44	3.19	3.4	0.002	0.43	0.0	0.03	14.56	0.00	2.273	4.34	0.44	1.2	98.8	0.0	0.87	0.57	0.82	1.73	3.4	0.003	0.52	0.0	0.04	15.26	0.00	2.470	4.87	4.36	1.6	98.4	0.0	2.40	0.30	0.66	0.86	1.54	6516	834	3	0	0	0	0	logfile
✔	9BFH	44496	2024-09-27	2024-04-17	2.62	2.80	2.73	2.8	0.005	0.54	0.0	0.04	13.42	0.00	2.196	3.49	0.04	1.2	98.8	0.0	1.99	0.64	0.81	3.62	2.8	0.003	0.51	0.0	0.04	15.97	0.00	2.399	2.77	1.31	1.3	98.7	0.0	1.96	1.13	0.67	0.84	3.54	47579	3100	4	0	1	5	24002	logfile
✔	8Z9A	39858	2024-09-26	2024-04-23	3.0	3.24	3.08	3.3	0.005	0.84	0.0	0.04	16.75	0.01	2.163	6.19	1.56	2.3	97.7	0.0	2.18	0.58	0.81	1.75	3.3	0.003	0.51	0.0	0.04	16.71	0.00	2.566	5.62	2.05	2.2	97.8	0.0	3.27	1.11	0.54	0.79	1.70	13021	1557	8	0	8	0	0	logfile
✔	8Y95	39070	2024-09-24	2024-02-06	3.24	3.62	3.40	3.6	0.003	0.59	0.0	0.04	11.30	0.01	1.402	11.16	4.43	5.0	95.0	0.0	-1.89	0.50	0.65	1.63	3.6	0.003	0.64	0.0	0.04	15.01	0.00	2.323	10.39	4.01	3.6	96.4	0.0	0.82	1.10	0.56	0.79	2.52	9018	1124	4	0	6	0	0	logfile
✔	8UMU	42384	2024-09-28	2023-10-18	3.16	3.41	3.26	3.4	0.006	1.02	4.0	0.06	17.81	0.01	2.104	8.60	0.84	2.8	97.2	0.0	-1.89	0.71	0.71	1.14	3.4	0.004	0.69	0.0	0.04	17.96	0.00	1.951	13.49	3.65	3.5	96.5	0.0	0.19	0.53	0.72	0.74	1.15	20521	2603	12	0	7	0	0	logfile
✔	8BLB	16105	2024-09-25	2022-11-09	3.3	3.54	3.32	3.6	0.004	0.66	0.0	0.05	15.18	0.00	2.171	3.36	0.00	1.4	98.6	0.0	-0.87	0.66	0.81	3.63	3.6	0.003	0.65	0.0	0.05	15.50	0.00	2.355	5.96	4.55	2.6	97.4	0.0	-1.47	1.25	0.64	0.82	2.93	9400	1055	20	0	30	0	0	logfile
✔	8UMT	42383	2024-09-28	2023-10-18	3.33	3.59	3.44	3.5	0.004	0.75	0.0	0.05	14.62	0.01	2.048	9.08	4.14	3.6	96.3	0.0	-2.12	0.75	0.71	1.12	3.5	0.005	0.89	1.0	0.05	16.54	0.01	1.878	16.21	4.06	4.3	95.7	0.0	-0.30	1.78	0.77	0.75	0.95	20697	2625	12	0	7	0	0	logfile
✔	8WCE	37439	2024-09-25	2023-09-11	3.09	3.37	3.25	3.4	0.003	0.64	0.0	0.04	21.71	0.00	2.259	4.16	0.33	9.2	90.8	0.0	-0.41	0.75	0.83	2.64	3.3	0.004	0.63	0.0	0.04	21.63	0.00	2.164	4.06	2.32	9.8	90.2	0.0	0.38	0.90	0.72	0.88	2.53	10350	994	5	97	2	0	0	logfile
✔	8TSP	41597	2024-09-24	2023-08-11	3.9	4.19	3.93	4.2	0.004	0.75	0.0	0.05	16.52	0.01	2.201	10.09	0.72	3.0	97.0	0.0	0.50	0.68	0.74	0.50	4.2	0.003	0.64	0.0	0.04	17.46	0.00	2.584	7.99	4.92	3.2	96.8	0.0	1.70	0.60	0.68	0.72	0.50	8888	1146	2	0	0	0	0	logfile
✔	9BFM	44500	2024-09-27	2024-04-18	2.71	2.98	2.81	2.9	0.004	0.58	0.0	0.05	13.66	0.00	1.952	4.33	0.16	1.3	98.7	0.0	2.36	0.67	0.83	3.74	2.9	0.003	0.50	0.0	0.04	15.72	0.00	2.335	3.15	0.79	1.2	98.8	0.0	2.15	0.35	0.66	0.84	3.56	47609	3100	4	0	1	3	24012	logfile
✔	8Z90	39852	2024-09-26	2024-04-22	2.87	3.20	2.88	3.1	0.003	0.67	0.0	0.04	14.44	0.01	2.113	10.76	0.00	3.8	96.2	0.0	-0.73	0.81	0.88	3.65	3.1	0.003	0.65	0.0	0.04	16.79	0.00	2.499	9.14	1.13	3.9	96.1	0.0	0.26	1.01	0.80	0.89	3.31	13481	1575	6	35	1	0	0	logfile
✔	8JRQ	36602	2024-09-26	2023-06-17	4.15	3.00	4.31	3.6	0.007	1.09	0.0	0.06	16.23	0.01	2.210	13.19	0.69	8.3	91.7	0.0	-4.43	0.69	0.67	—	2.1	0.003	0.74	0.0	0.04	14.13	0.00	2.043	15.21	0.00	4.2	95.8	0.0	-1.02	1.02	0.68	0.69	—	13270	1634	6	0	4	0	0	logfile

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