Table showing results for March 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5oAF	3773	2023-03-17	2017-06-21	4.06	4.15	—	4.1	0.001	0.47	0.0	0.04	9.13	0.00	2.165	12.39	0.28	2.4	97.6	0.0	-2.75	0.69	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19748	2538	12	0	6	0	0	logfile
✘	5GW4	9540	2023-03-15	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	8DK1	27480	2023-03-17	2022-07-01	2.95	3.68	3.03	3.4	0.002	0.42	0.0	0.04	9.97	0.00	2.294	2.83	1.44	3.3	96.7	0.0	2.11	0.85	0.90	2.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19500	2446	8	0	0	0	0	logfile
✘	7Fii	31598	2023-03-13	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8765	1522	6	0	0	0	0	logfile
✘	7Q8S	13865	2023-03-17	2021-11-11	3.4	3.39	3.35	3.3	0.002	0.44	0.0	0.04	8.15	0.00	2.222	3.32	0.23	2.1	97.9	0.0	1.31	0.68	0.86	4.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19665	2485	15	0	10	0	0	logfile
✘	7ZJE	14746	2023-03-17	2022-04-10	3.12	3.70	3.28	3.6	0.002	0.57	0.0	0.04	11.99	0.00	2.254	7.29	0.19	8.3	91.1	0.5	0.64	0.66	0.80	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19284	2380	4	0	0	0	0	logfile
✘	7JGE	22324	2023-03-17	2020-07-19	4.0	4.23	—	4.2	0.002	0.44	0.0	0.05	13.35	0.00	2.115	14.01	0.00	3.7	96.3	0.0	1.11	0.54	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20315	1437	1	0	0	0	8508	logfile
✘	6WB0	21583	2023-03-13	2020-03-26	4.2	4.26	—	4.2	0.002	0.51	0.0	0.04	11.69	0.00	2.131	11.89	0.81	4.1	95.9	0.0	-4.46	0.79	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8518	948	4	77	0	0	0	logfile
✘	7R8B	24314	2023-03-14	2021-06-26	3.1	3.48	—	3.3	0.002	0.55	0.0	0.04	13.48	0.00	2.103	6.66	1.94	3.5	96.5	0.0	-1.73	0.67	0.85	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10868	1371	6	0	2	0	0	logfile
✘	5GW5	9541	2023-03-15	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.87	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	7VGS	31978	2023-03-15	2021-09-18	2.8	3.28	—	3.3	0.002	0.66	0.0	0.04	12.19	0.01	2.230	9.89	0.38	7.0	93.0	0.0	-1.16	0.67	0.75	2.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9700	1254	6	0	0	0	0	logfile
✘	7PKN	13473	2023-03-17	2021-08-25	3.2	3.78	—	3.4	0.002	0.55	0.0	0.04	12.63	0.00	2.106	6.10	0.00	2.6	97.4	0.0	2.14	0.77	0.75	1.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18616	2310	12	0	0	1	0	logfile
✘	6PM5	20388	2023-03-15	2019-07-01	3.1	3.38	—	3.4	0.002	0.49	0.0	0.06	6.82	0.00	2.275	4.99	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13975	1735	15	0	15	0	0	logfile
✘	7EQ9	31256	2023-03-14	2021-04-30	3.3	3.70	3.42	3.6	0.002	0.47	0.0	0.04	15.65	0.00	2.267	3.70	0.00	3.3	96.7	0.0	1.85	0.60	0.53	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62520	7620	60	0	0	0	0	logfile
✘	7oE7	12861	2023-03-14	2021-05-01	3.73	3.95	3.97	3.7	0.002	0.53	0.0	0.04	14.33	0.00	2.084	3.86	0.00	6.8	93.2	0.0	-1.48	0.79	0.64	0.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11116	1382	1	0	2	0	0	logfile
✘	7QFQ	13947	2023-03-14	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10659	1291	1	0	0	0	0	logfile
✘	7oNL	12997	2023-03-15	2021-05-25	3.9	3.35	3.58	3.6	0.002	0.38	0.0	0.04	9.17	0.00	2.180	5.51	0.41	1.5	98.5	0.0	2.97	0.64	0.80	2.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13923	1827	7	0	0	0	0	logfile
✘	8A01	15044	2023-03-12	2022-05-26	3.2	3.25	3.20	3.2	0.002	0.44	0.0	0.05	14.81	0.00	2.289	4.13	0.00	2.0	98.0	0.0	0.02	0.48	0.86	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5511	717	3	0	0	0	0	logfile
✘	7ZZQ	15039	2023-03-17	2022-05-26	2.6	3.53	2.62	3.0	0.002	0.46	0.0	0.04	18.37	0.00	2.094	5.12	1.18	1.9	98.1	0.0	1.31	0.88	0.83	3.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19527	2468	46	0	0	105	0	logfile
✘	7SL7	25193	2023-03-16	2021-10-22	3.1	3.35	—	3.4	0.002	0.56	0.0	0.04	13.08	0.00	2.149	8.91	0.24	5.5	94.2	0.3	-0.86	0.77	0.82	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14732	1826	10	0	0	0	0	logfile

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