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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7RKH | 24497 | 2023-05-17 | 2021-07-22 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.45 | — | — | 3.48 | 2.9 | 0.003 | 0.53 | 0.0 | 0.04 | 16.56 | 0.00 | 1.842 | 4.99 | 0.97 | 2.9 | 97.1 | 0.0 | 0.90 | — | 0.59 | 0.79 | 3.31 | 35352 | 2236 | 8 | 0 | 16 | 0 | 17564 | logfile |
✘ | 7oB9 | 12795 | 2023-05-15 | 2021-04-21 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -3.33 | — | — | 4.67 | 2.9 | 0.004 | 0.70 | 0.0 | 0.04 | 15.36 | 0.00 | 1.955 | 9.76 | 1.30 | 4.3 | 95.7 | 0.0 | 0.12 | — | 0.86 | 0.91 | 3.49 | 36345 | 4397 | 21 | 69 | 7 | 0 | 0 | logfile |
✘ | 6PPE | 20434 | 2023-05-17 | 2019-07-06 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.78 | — | — | 4.24 | 3.5 | 0.004 | 0.55 | 0.0 | 0.04 | 14.59 | 0.00 | 1.924 | 5.42 | 0.00 | 2.3 | 97.7 | 0.0 | 1.70 | — | 0.77 | 0.86 | 3.68 | 43736 | 2814 | 42 | 0 | 0 | 14 | 21896 | logfile |
✘ | 6o7K | 0643 | 2023-05-04 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.3 | 0.004 | 0.69 | 0.0 | 0.04 | 15.44 | 0.00 | 2.073 | 20.70 | 0.00 | 8.3 | 91.3 | 0.4 | -1.56 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 7BL3 | 12216 | 2023-05-15 | 2021-01-18 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.33 | — | — | 1.02 | 3.5 | 0.005 | 0.68 | 0.0 | 0.04 | 15.55 | 0.01 | 1.966 | 18.40 | 0.72 | 8.9 | 91.1 | 0.0 | -1.72 | — | 0.76 | 0.83 | 1.17 | 92831 | 3612 | 39 | 3021 | 2 | 27 | 0 | logfile |
✘ | 3J8H | 2807 | 2023-05-04 | 2014-10-26 | 3.8 | 3.95 | — | 3.8 | 0.006 | 1.31 | 4.0 | 0.05 | 10.89 | 0.01 | 1.488 | 33.49 | 2.47 | 5.3 | 92.8 | 1.9 | -2.06 | 0.65 | 0.64 | 1.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111160 | 12796 | 12 | 0 | 2276 | 0 | 0 | logfile |
✘ | 5GL0 | 9520 | 2023-05-04 | 2016-07-07 | 4.2 | 4.40 | — | 4.2 | 0.018 | 1.72 | 17.0 | 0.10 | 11.34 | 0.01 | 1.957 | 21.25 | 0.51 | 6.5 | 90.6 | 2.9 | -2.58 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111000 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 7QV7 | 14169 | 2023-05-16 | 2022-01-19 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41236 | 5276 | 32 | 0 | 58 | 0 | 0 | logfile |
✘ | 6PLU | 20376 | 2023-05-06 | 2019-07-01 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14665 | 1720 | 15 | 0 | 80 | 0 | 0 | logfile |
✘ | 5GKY | 9518 | 2023-05-04 | 2016-07-07 | 3.8 | 4.18 | — | 4.0 | 0.017 | 1.70 | 19.0 | 0.10 | 11.29 | 0.01 | 1.789 | 19.04 | 0.51 | 5.8 | 91.8 | 2.5 | -2.71 | 0.73 | 0.79 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111036 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 6U8Q | 20689 | 2023-05-09 | 2019-09-05 | 4.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21129 | 2442 | 18 | 96 | 6 | 0 | 0 | logfile |
✘ | 7WDB | 32436 | 2023-05-09 | 2021-12-21 | 2.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22400 | 2660 | 8 | 0 | 28 | 0 | 0 | logfile |
✘ | 8ERA | 28551 | 2023-05-12 | 2022-10-11 | 2.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29054 | 3644 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 6PLS | 20374 | 2023-05-06 | 2019-07-01 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14610 | 1720 | 15 | 0 | 75 | 0 | 0 | logfile |
✘ | 6RWN | 10043 | 2023-05-07 | 2019-06-05 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18346 | 2076 | 26 | 86 | 16 | 8 | 0 | logfile |
✘ | 7RR6 | 24653 | 2023-05-10 | 2021-08-09 | 3.1 | 3.36 | 3.18 | 3.3 | 0.008 | 1.21 | 12.0 | 0.08 | 15.64 | 0.01 | 2.102 | 14.14 | 0.44 | 5.0 | 95.0 | 0.0 | -1.19 | 0.74 | 0.84 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23821 | 3063 | 6 | 0 | 35 | 0 | 0 | logfile |
✘ | 7YRQ | 34064 | 2023-05-04 | 2022-08-10 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9812 | 1247 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 7P2Y | 13174 | 2023-05-15 | 2021-07-06 | 3.1 | 3.84 | — | 3.5 | 0.004 | 0.70 | 0.0 | 0.04 | 11.76 | 0.00 | 2.088 | 10.47 | 0.08 | 3.8 | 96.2 | 0.0 | 0.12 | 0.82 | 0.87 | 2.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37172 | 4904 | 30 | 0 | 9 | 3 | 0 | logfile |
✘ | 7JR7 | 22443 | 2023-05-07 | 2020-08-11 | 3.3 | 3.18 | — | 3.3 | 0.010 | 1.34 | 4.0 | 0.08 | 11.83 | 0.01 | 2.254 | 3.49 | 0.57 | 2.6 | 97.0 | 0.4 | 0.62 | 0.65 | 0.79 | 2.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15799 | 2020 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PLV | 20377 | 2023-05-06 | 2019-07-01 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14655 | 1725 | 15 | 0 | 75 | 0 | 0 | logfile |