Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5WP6	8871	2023-05-12	2017-08-03	3.8	4.03	—	3.8	0.062	4.81	0.0	0.06	10.88	0.01	2.083	3.10	0.30	6.7	93.3	0.0	-3.61	0.70	0.83	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29036	3908	8	0	8	0	0	logfile
✘	7R6K	24280	2023-05-08	2021-06-22	3.17	3.23	3.15	3.2	0.003	0.52	0.0	0.04	14.70	0.00	2.200	8.68	0.00	4.3	95.7	0.0	0.58	0.73	0.79	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20543	2153	16	152	0	0	0	logfile
✘	7NVR	12610	2023-05-15	2021-03-15	4.5	4.38	4.40	3.5	0.003	0.55	0.0	0.04	15.01	0.00	1.807	8.62	0.01	3.9	96.0	0.0	0.72	0.75	0.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	96126	11548	71	128	157	0	0	logfile
✘	7R72	24290	2023-05-16	2021-06-24	3.07	3.12	3.04	3.1	0.003	0.53	0.0	0.04	13.98	0.00	2.007	6.67	0.41	3.7	96.3	0.0	0.87	0.73	0.84	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39443	3040	25	700	1	0	0	logfile
✘	7PKS	13479	2023-05-17	2021-08-26	3.6	4.27	3.31	2.8	0.004	0.78	0.0	0.05	14.44	0.01	1.638	5.38	0.00	4.0	95.9	0.0	-0.87	0.76	0.62	1.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	101147	13139	41	74	118	0	0	logfile
✘	7NVL	12605	2023-05-07	2021-03-15	2.5	2.63	2.55	2.6	0.005	0.78	0.0	0.05	16.49	0.00	1.915	8.72	1.56	3.2	96.7	0.0	-2.02	0.60	0.73	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	66477	8626	50	0	48	27	0	logfile
✘	8CSR	26968	2023-05-09	2022-05-13	2.54	2.48	2.56	2.6	0.004	0.65	0.0	0.38	14.52	0.01	1.910	2.68	0.00	1.7	98.3	0.0	1.19	0.72	0.78	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69868	6354	42	854	43	46	0	logfile
✘	6UMM	20820	2023-05-10	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	11.97	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23658	3184	10	0	0	0	0	logfile
✘	8E01	27812	2023-05-15	2022-08-08	3.4	3.80	3.71	3.8	0.002	0.56	0.0	0.04	17.85	0.00	2.278	9.40	0.41	2.0	98.0	0.0	-0.28	0.63	0.61	0.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	91080	12060	60	0	0	0	0	logfile
✘	7LWD	23545	2023-05-03	2021-03-01	3.65	3.91	3.58	3.9	0.011	0.97	0.0	0.04	14.88	0.00	2.024	11.24	0.00	6.4	93.6	0.0	-4.15	0.67	0.81	2.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6163	769	4	0	3	0	0	logfile
✘	7TJQ	25929	2023-05-12	2022-01-16	3.13	2.03	—	2.0	0.004	0.77	0.0	0.05	13.25	0.01	2.288	1.08	1.03	4.5	95.5	0.0	-0.55	0.75	0.75	3.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20538	2679	21	0	12	0	0	logfile
✘	6VL6	21231	2023-05-09	2020-01-22	4.6	5.00	4.54	4.6	0.019	1.46	0.0	0.09	11.38	0.01	2.431	0.59	0.00	0.9	99.1	0.0	0.45	0.87	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21504	2640	24	0	0	0	0	logfile
✘	7SYP	25536	2023-05-12	2021-11-25	4.0	3.37	3.92	3.3	0.003	0.83	4.0	0.04	15.65	0.01	2.250	5.48	0.05	4.7	95.3	0.0	-2.44	0.65	0.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80436	4896	39	1941	2	0	0	logfile
✘	7VAV	31866	2023-05-12	2021-08-30	2.8	2.66	3.31	3.2	0.002	0.49	0.0	0.04	13.26	0.00	2.035	3.96	0.00	1.5	98.5	0.0	1.80	0.63	0.80	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29520	3787	14	0	4	0	0	logfile
✘	8HRB	34966	2023-05-16	2022-12-15	3.78	3.89	3.82	3.8	0.002	0.48	0.0	0.04	14.55	0.00	2.187	8.99	0.02	4.4	95.6	0.0	-0.91	0.78	0.79	1.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	96352	11778	28	102	8	0	0	logfile
✘	6VRL	21370	2023-05-03	2020-02-07	3.8	3.98	4.22	3.9	0.003	0.61	0.0	0.04	14.10	0.00	2.159	10.65	0.00	4.9	95.1	0.0	-3.12	0.49	0.69	1.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6141	764	4	0	4	0	0	logfile
✘	7XDB	33142	2023-05-12	2022-03-26	2.62	2.82	2.70	2.8	0.004	0.64	0.0	0.05	12.28	0.01	2.111	9.82	0.00	1.9	98.1	0.0	0.54	0.69	0.83	3.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30189	3779	23	0	38	0	0	logfile
✘	8DRA	27675	2023-05-04	2022-07-20	3.98	4.17	3.98	4.0	0.003	0.77	0.0	0.05	15.74	0.01	2.257	11.58	0.35	5.4	94.6	0.0	-3.01	0.63	0.69	0.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9899	1218	3	0	0	0	0	logfile
✘	7YVQ	34136	2023-05-13	2022-08-19	3.18	3.50	3.32	3.3	0.004	0.58	0.0	0.04	14.17	0.00	2.131	6.40	0.75	6.2	93.8	0.0	-0.26	0.79	0.87	3.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30742	3874	15	0	21	0	0	logfile
✘	7T3M	25663	2023-05-12	2021-12-08	3.0	3.51	3.03	3.4	0.003	0.59	0.0	0.05	13.01	0.00	2.194	3.62	0.03	2.9	97.1	0.0	-0.02	0.80	0.81	3.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30099	3771	15	0	51	0	0	logfile

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