Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8CPM	16783	2023-05-15	2023-03-03	1.81	1.57	1.84	1.6	0.005	0.85	0.0	0.05	15.21	0.01	1.916	7.77	0.00	1.0	99.0	0.0	2.32	0.70	0.75	7.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36090	4152	72	0	38	1972	0	logfile
✘	8CPS	16784	2023-05-15	2023-03-03	1.82	1.69	1.90	1.7	0.003	0.66	0.0	0.05	15.42	0.01	2.116	2.82	0.00	1.0	99.0	0.0	2.28	0.75	0.81	8.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36034	4152	72	0	38	1916	0	logfile
✘	7ZG7	14705	2023-05-15	2022-04-02	1.77	1.79	1.79	1.8	0.004	0.74	0.0	0.04	14.44	0.01	1.952	3.06	0.00	1.8	98.2	0.0	3.49	0.77	0.86	9.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39086	4128	72	0	382	2680	0	logfile
✘	8A57	15161	2023-05-15	2022-06-14	2.3	1.87	2.34	2.1	0.011	1.72	2.0	0.12	15.42	0.02	1.972	3.26	2.49	7.1	91.7	1.2	-3.32	0.61	0.75	3.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92760	3527	39	3022	167	0	0	logfile
✘	8G6X	29787	2023-05-15	2023-02-16	2.31	1.96	2.20	2.0	0.011	0.99	0.0	0.06	15.24	0.03	1.474	7.58	5.85	4.1	95.8	0.2	-2.02	0.68	0.83	5.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93873	3177	72	3037	252	3462	0	logfile
✘	7P13	13154	2023-05-06	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13727	1743	7	0	0	0	154	logfile
✘	7TU5	26126	2023-05-15	2022-02-02	2.1	1.97	2.06	1.8	0.009	0.85	6.0	0.06	15.88	0.01	1.910	4.33	1.54	1.4	98.6	0.0	0.64	0.84	0.82	4.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19656	2574	18	0	6	6	0	logfile
✘	6X1A	21994	2023-05-05	2020-05-18	2.5	1.99	2.50	2.6	0.006	0.93	0.0	0.07	15.41	0.00	2.140	14.37	3.79	3.9	96.1	0.0	-3.15	0.51	0.71	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1262	5	0	1	23	0	logfile
✘	7TJQ	25929	2023-05-12	2022-01-16	3.13	2.03	—	2.0	0.004	0.77	0.0	0.05	13.25	0.01	2.288	1.08	1.03	4.5	95.5	0.0	-0.55	0.75	0.75	3.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20538	2679	21	0	12	0	0	logfile
✘	7TU8	26129	2023-05-16	2022-02-02	2.6	2.05	2.59	2.0	0.011	0.81	0.0	0.05	13.32	0.00	1.874	2.75	0.00	2.8	97.0	0.2	0.45	0.81	0.80	4.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20232	2604	12	0	24	0	0	logfile
✘	7ZL1	14774	2023-05-11	2022-04-13	2.5	2.06	2.45	2.4	0.007	0.88	0.0	0.06	14.64	0.01	2.033	2.59	0.65	5.7	93.3	1.0	-0.02	0.73	0.86	6.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27257	1720	24	0	8	379	13574	logfile
✘	7TU6	26127	2023-05-16	2022-02-02	2.7	2.11	2.73	2.0	0.007	0.79	6.0	0.06	13.43	0.01	1.892	3.29	0.62	3.0	97.0	0.0	0.38	0.77	0.76	2.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20028	2580	12	0	18	0	0	logfile
✘	7JFo	22308	2023-05-16	2020-07-17	2.13	2.12	—	2.1	0.022	1.67	2.0	0.11	12.07	0.01	2.198	6.71	1.23	3.9	96.1	0.0	-0.96	0.72	0.78	6.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38958	4832	40	0	0	1198	0	logfile
✘	8B14	15802	2023-05-08	2022-09-09	2.6	2.13	2.61	2.0	0.007	0.68	0.0	0.05	16.80	0.01	2.163	5.79	0.79	2.8	97.2	0.0	0.27	0.80	0.81	5.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18810	1243	3	0	2	0	9112	logfile
✘	7Z31	14470	2023-05-16	2022-03-01	2.76	2.15	—	2.1	0.006	0.70	0.0	0.05	15.67	0.01	1.998	13.10	6.49	7.1	92.9	0.1	-1.15	0.55	0.75	3.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40156	5040	25	0	29	1	0	logfile
✘	7SiD	25141	2023-05-17	2021-10-13	2.53	2.17	—	2.7	0.003	0.53	0.0	0.04	14.33	0.01	2.072	4.12	0.77	1.7	98.3	0.0	2.49	0.61	0.61	1.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44650	5566	6	0	4	0	0	logfile
✘	7XSQ	33431	2023-05-07	2022-05-15	2.88	2.17	2.83	2.1	0.009	0.93	3.0	0.06	17.11	0.01	2.157	2.60	2.74	6.1	93.8	0.1	-2.88	0.77	0.75	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16573	1967	4	34	4	0	0	logfile
✘	7AQC	11862	2023-05-15	2020-10-21	2.99	2.20	—	2.5	0.004	0.83	0.0	0.05	16.62	0.01	1.862	5.10	0.13	5.4	94.6	0.0	-1.91	0.83	0.80	2.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	95378	3752	34	3077	0	0	0	logfile
✘	7V69	31739	2023-05-04	2021-08-20	3.4	2.24	—	2.0	0.003	0.65	0.0	0.04	12.64	0.00	2.096	13.28	0.00	2.9	97.1	0.0	-2.02	0.68	0.64	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8539	1122	5	0	0	0	0	logfile
✘	7ZGU	14713	2023-05-16	2022-04-04	3.4	2.24	3.39	2.1	0.003	0.68	0.0	0.04	14.94	0.00	2.201	11.55	0.55	6.2	93.8	0.0	-0.91	0.69	0.68	1.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38940	4854	12	0	6	0	0	logfile

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