Table showing results for October 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7ZG7	14705	2023-10-18	2022-04-02	1.77	1.79	1.79	1.8	0.004	0.74	0.0	0.04	14.44	0.01	1.952	3.06	0.00	1.8	98.2	0.0	3.49	0.77	0.86	9.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39086	4128	72	0	382	2680	0	logfile
✘	7P13	13154	2023-10-06	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13727	1743	7	0	0	0	154	logfile
✘	8BQV	16188	2023-10-04	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.01	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✘	6X1A	21994	2023-10-05	2020-05-18	2.5	1.99	2.50	2.6	0.006	0.93	0.0	0.07	15.41	0.00	2.140	14.37	3.79	3.9	96.1	0.0	-3.15	0.51	0.71	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1262	5	0	1	23	0	logfile
✘	7YLA	33904	2023-10-10	2022-07-25	2.52	2.04	2.52	1.6	0.006	0.71	0.0	0.04	14.58	0.01	1.980	8.85	0.75	4.3	95.5	0.3	-0.94	0.81	0.81	3.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	125784	3775	36	2994	6	0	32052	logfile
✘	7UZQ	26916	2023-10-10	2022-05-09	2.17	2.05	2.16	2.1	0.006	0.92	0.0	0.05	16.21	0.01	2.215	4.59	2.27	1.8	98.0	0.2	2.16	0.68	0.87	5.59	—	—	—	—	—	—	—	—	—	—	—	—	—	1.79	—	—	—	5.85	20617	1315	10	0	4	235	10214	logfile
✘	7TU8	26129	2023-10-19	2022-02-02	2.6	2.05	2.59	2.0	0.011	0.81	0.0	0.05	13.32	0.00	1.874	2.75	0.00	2.8	97.0	0.2	0.45	0.81	0.80	4.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20232	2604	12	0	24	0	0	logfile
✘	7ZL1	14774	2023-10-13	2022-04-13	2.5	2.06	2.45	2.4	0.007	0.88	0.0	0.06	14.64	0.01	2.033	2.59	0.65	5.7	93.3	1.0	-0.02	0.73	0.86	6.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27257	1720	24	0	8	379	13574	logfile
✘	8BQW	16189	2023-10-08	2023-01-18	2.3	2.12	2.14	2.2	0.008	1.14	0.0	0.07	8.96	0.00	0.052	12.77	0.00	9.6	90.4	0.0	-3.78	0.46	0.75	7.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17385	2310	90	0	270	135	0	logfile
✘	8B14	15802	2023-10-09	2022-09-09	2.6	2.13	2.61	2.0	0.007	0.68	0.0	0.05	16.80	0.01	2.163	5.79	0.79	2.8	97.2	0.0	0.27	0.80	0.81	5.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18810	1243	3	0	2	0	9112	logfile
✘	7XSQ	33431	2023-10-08	2022-05-15	2.88	2.17	2.83	2.1	0.009	0.93	3.0	0.06	17.11	0.01	2.157	2.60	2.74	6.1	93.8	0.1	-2.88	0.77	0.75	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16573	1967	4	34	4	0	0	logfile
✘	7TFA	25867	2023-10-19	2022-01-06	2.07	2.20	—	2.2	0.003	0.57	0.0	0.04	17.35	0.00	2.014	5.94	2.16	3.6	96.4	0.0	0.31	0.47	0.65	4.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	42636	5424	36	0	24	0	120	logfile
✘	7JZ6	22530	2023-10-10	2020-09-01	2.53	2.20	—	2.2	0.009	1.04	8.0	0.11	19.13	0.01	1.219	8.05	11.17	7.8	92.2	0.0	-3.03	0.58	0.65	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20842	2646	12	0	4	18	0	logfile
✘	8H3M	34469	2023-10-10	2022-10-09	2.48	2.22	2.25	2.2	0.004	0.65	0.0	0.05	16.02	0.00	2.218	5.84	2.03	3.6	96.1	0.3	-0.03	0.72	0.87	4.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20936	2662	8	0	22	0	0	logfile
✘	7V69	31739	2023-10-05	2021-08-20	3.4	2.24	—	2.0	0.003	0.65	0.0	0.04	12.64	0.00	2.096	13.28	0.00	2.9	97.1	0.0	-2.02	0.68	0.64	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8539	1122	5	0	0	0	0	logfile
✘	8EEY	28065	2023-10-10	2022-09-07	2.53	2.25	2.57	2.5	0.006	0.88	0.0	0.05	15.16	0.01	1.937	0.37	0.14	1.8	98.1	0.0	0.01	0.60	0.80	4.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20886	2393	6	66	4	0	0	logfile
✘	7N5D	24186	2023-10-10	2021-06-05	2.8	2.25	—	1.3	0.023	1.52	0.0	0.09	9.91	0.01	2.378	0.32	0.00	1.1	98.9	0.0	1.83	0.84	0.83	4.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20593	2612	14	0	7	0	0	logfile
✘	7WPA	32680	2023-10-15	2022-01-23	2.77	2.26	—	2.1	0.004	0.78	2.0	0.05	14.25	0.01	2.327	3.39	0.45	5.4	94.5	0.0	-4.08	0.72	0.73	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30444	3774	20	0	47	0	0	logfile
✘	7oTo	13063	2023-10-05	2021-06-10	3.4	2.27	—	1.3	0.013	1.84	0.0	0.11	15.17	0.01	1.799	3.86	0.00	1.5	98.5	0.0	2.59	0.76	0.74	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10333	1313	4	0	4	0	0	logfile
✘	7R47	14282	2023-10-09	2022-02-08	2.3	2.29	—	2.3	0.008	0.81	0.0	0.85	17.14	0.01	1.921	2.60	1.15	2.1	97.9	0.0	0.85	0.73	0.90	6.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	68578	8089	116	0	51	1836	0	logfile

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