Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6RRS	4989	2023-05-15	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93060	23220	180	0	0	0	0	logfile
✘	6UXB	20932	2023-05-04	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✘	6UXA	20931	2023-05-04	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✘	6RLB	4918	2023-05-08	2019-05-01	4.5	4.85	4.49	4.3	0.007	0.95	0.0	0.06	4.70	0.00	2.082	0.71	0.00	4.0	95.9	0.0	-1.08	0.80	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20407	4122	14	0	0	0	0	logfile
✘	7WKK	32566	2023-05-15	2022-01-10	4.2	4.30	—	3.9	0.006	0.63	0.0	0.04	4.94	0.00	2.138	2.83	0.00	4.7	95.2	0.1	-2.36	0.46	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92821	18728	30	0	0	0	0	logfile
✘	6VE2	21152	2023-05-12	2019-12-28	4.3	4.80	4.34	4.2	0.006	1.23	0.0	0.07	5.37	0.01	2.173	16.97	0.00	4.7	94.9	0.5	-0.93	0.83	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30198	6153	21	0	0	0	0	logfile
✘	7A95	11685	2023-05-12	2020-09-01	4.3	4.83	4.39	4.3	0.003	0.47	2.0	0.04	5.77	0.00	2.226	3.53	0.90	11.0	89.0	0.0	-4.57	0.87	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29887	3794	4	0	0	0	0	logfile
✘	7RWA	24712	2023-05-07	2021-08-19	4.7	5.66	4.89	4.6	0.003	0.89	0.0	0.05	5.84	0.00	1.914	2.65	0.00	5.8	93.7	0.5	-0.12	0.84	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16158	3244	10	0	0	0	0	logfile
✘	5VLZ	8709	2023-05-16	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	96897	24179	181	0	0	0	0	logfile
✘	6PM5	20388	2023-05-06	2019-07-01	3.1	3.38	—	3.4	0.002	0.49	0.0	0.06	6.82	0.00	2.275	4.99	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13975	1735	15	0	15	0	0	logfile
✘	6oLL	20116	2023-05-09	2019-04-16	4.1	4.59	—	4.4	0.004	1.05	0.0	0.06	6.94	0.01	2.400	0.40	0.00	2.0	97.8	0.2	-0.51	0.67	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10426	2114	6	0	0	0	0	logfile
✘	5GW4	9540	2023-05-06	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	5GW5	9541	2023-05-06	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.87	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	7VXK	32182	2023-05-12	2021-11-12	3.7	4.06	—	3.9	0.002	0.50	0.0	0.04	7.67	0.00	2.235	7.48	0.00	3.8	96.1	0.1	-2.36	0.55	0.60	1.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30079	3814	4	0	0	0	0	logfile
✘	7VXD	32176	2023-05-12	2021-11-12	4.0	4.60	—	4.2	0.003	0.50	0.0	0.04	7.89	0.00	2.091	7.52	0.03	4.0	95.9	0.2	-2.30	0.70	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30194	3829	4	0	0	0	0	logfile
✘	7DK4	30702	2023-05-14	2020-11-23	3.8	3.20	—	3.4	0.003	0.55	0.0	0.04	7.92	0.00	2.106	1.33	0.15	2.8	97.2	0.0	-3.26	0.58	0.47	1.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34707	4470	9	0	0	0	0	logfile
✘	8HGo	34744	2023-05-04	2022-11-15	3.31	2.35	3.32	2.2	0.004	0.71	0.0	0.05	7.94	0.01	2.284	4.45	0.00	8.0	91.8	0.2	-3.74	0.71	0.68	2.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9227	1178	6	0	8	0	0	logfile
✘	7VXF	32178	2023-05-12	2021-11-12	3.6	4.01	—	3.8	0.002	0.48	0.0	0.04	8.03	0.00	1.780	7.55	0.03	4.0	95.9	0.1	-2.43	0.47	0.48	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30079	3814	4	0	0	0	0	logfile
✘	6MZU	9307	2023-05-13	2018-11-05	3.4	3.56	—	3.5	0.006	0.72	0.0	0.05	8.11	0.01	2.309	6.63	0.03	2.5	97.5	0.0	-4.73	0.78	0.85	4.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32833	4523	42	0	0	0	0	logfile
✘	7CM7	30403	2023-05-16	2020-07-25	2.6	2.33	—	2.7	0.004	0.84	0.0	0.05	8.33	0.01	2.319	3.35	0.00	4.1	95.9	0.0	-4.15	0.66	0.73	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39216	4960	16	0	8	0	0	logfile

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