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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6PPE | 20434 | 2023-10-20 | 2019-07-06 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.78 | — | — | 4.24 | 3.5 | 0.004 | 0.55 | 0.0 | 0.04 | 14.59 | 0.00 | 1.924 | 5.42 | 0.00 | 2.3 | 97.7 | 0.0 | 1.70 | — | 0.77 | 0.86 | 3.68 | 43736 | 2814 | 42 | 0 | 0 | 14 | 21896 | logfile |
✘ | 8F8S | 28935 | 2023-10-10 | 2022-11-22 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.35 | — | — | 3.68 | 1.9 | 0.003 | 0.66 | 0.0 | 0.05 | 17.12 | 0.00 | 1.972 | 7.88 | 1.88 | 3.5 | 96.5 | 0.0 | 0.36 | — | 0.79 | 0.84 | 3.18 | 20371 | 2579 | 14 | 0 | 14 | 0 | 0 | logfile |
✘ | 6PPD | 20433 | 2023-10-10 | 2019-07-06 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.49 | — | — | 2.40 | 3.6 | 0.004 | 0.72 | 0.0 | 0.04 | 15.94 | 0.00 | 2.084 | 10.22 | 0.40 | 4.9 | 95.0 | 0.0 | -1.64 | — | 0.50 | 0.82 | 2.02 | 68769 | 8728 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6J99 | 9783 | 2023-10-10 | 2019-01-22 | 4.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.88 | — | — | — | 4.1 | 0.004 | 0.79 | 0.0 | 0.04 | 27.39 | 0.00 | 2.135 | 19.54 | 0.20 | 5.7 | 94.3 | 0.0 | -0.95 | — | 0.78 | 0.78 | — | 15266 | 1164 | 12 | 289 | 0 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-10-04 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.005 | 0.71 | 0.0 | 0.04 | 15.42 | 0.01 | 2.070 | 22.73 | 0.00 | 8.6 | 91.0 | 0.4 | -1.53 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 6o9K | 0662 | 2023-10-21 | 2019-03-14 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.96 | — | — | — | 4.0 | 0.003 | 0.71 | 0.0 | 0.03 | 16.29 | 0.01 | 2.027 | 24.45 | 0.78 | 8.9 | 90.5 | 0.5 | -2.16 | — | 0.92 | 0.85 | — | 146597 | 6162 | 55 | 4594 | 0 | 0 | 0 | logfile |
✘ | 7BLX | 12227 | 2023-10-20 | 2021-01-19 | 3.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 47524 | 3989 | 53 | 0 | 317 | 331 | 0 | logfile |
✘ | 7PSL | 13613 | 2023-10-04 | 2021-09-23 | 3.3 | 3.77 | — | 3.7 | 0.006 | 0.65 | 0.0 | 0.04 | 14.91 | 0.00 | 2.258 | 5.27 | 0.00 | 3.9 | 96.1 | 0.0 | -3.04 | 0.61 | 0.76 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9612 | 1200 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7QXN | 14201 | 2023-10-19 | 2022-01-26 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.47 | — | — | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103713 | 13349 | 53 | 0 | 12 | 0 | 0 | logfile |
✘ | 7BV8 | 30215 | 2023-10-16 | 2020-04-09 | 3.14 | 3.53 | — | 3.5 | 0.007 | 0.75 | 0.0 | 0.04 | 15.53 | 0.01 | 2.007 | 9.15 | 0.29 | 8.3 | 91.5 | 0.3 | -4.23 | 0.72 | 0.82 | 3.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 91505 | 3436 | 32 | 3017 | 0 | 0 | 0 | logfile |
✘ | 6CRV | 7573 | 2023-10-10 | 2018-03-19 | 3.2 | 3.31 | 3.17 | 3.3 | 0.013 | 1.09 | 0.0 | 0.06 | 8.90 | 0.01 | 2.170 | 4.36 | 0.26 | 4.1 | 95.9 | 0.0 | -3.09 | 0.74 | 0.81 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21036 | 2643 | 15 | 0 | 39 | 0 | 0 | logfile |
✘ | 7ZMD | 14795 | 2023-10-13 | 2022-04-19 | 2.93 | 3.18 | 2.97 | 3.2 | 0.002 | 0.52 | 0.0 | 0.08 | 13.13 | 0.01 | 2.146 | 3.80 | 0.00 | 2.5 | 97.5 | 0.0 | 0.93 | 0.68 | 0.78 | 3.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18400 | 1191 | 2 | 0 | 0 | 0 | 9106 | logfile |
✘ | 7ZES | 14692 | 2023-10-06 | 2022-03-31 | 3.1 | 3.32 | 3.11 | 3.4 | 0.005 | 0.61 | 0.0 | 0.04 | 13.69 | 0.01 | 1.966 | 5.90 | 0.00 | 2.3 | 97.7 | 0.0 | 0.35 | 0.75 | 0.82 | 3.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13538 | 1654 | 6 | 10 | 4 | 0 | 0 | logfile |
✘ | 7L02 | 23094 | 2023-10-20 | 2020-12-10 | 3.2 | 3.91 | — | 3.7 | 0.015 | 1.55 | 4.0 | 0.10 | 11.97 | 0.01 | 2.370 | 1.29 | 0.70 | 3.3 | 96.7 | 0.0 | -0.25 | 0.80 | 0.74 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44110 | 3776 | 23 | 0 | 69 | 0 | 13841 | logfile |
✘ | 7UB5 | 26435 | 2023-10-12 | 2022-03-14 | 3.35 | 3.64 | 3.34 | 3.5 | 0.004 | 0.67 | 0.0 | 0.05 | 13.29 | 0.01 | 2.287 | 3.61 | 0.00 | 3.5 | 96.5 | 0.0 | -0.85 | 0.85 | 0.87 | 3.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24923 | 3104 | 16 | 0 | 47 | 0 | 0 | logfile |
✘ | 7BP0 | 30138 | 2023-10-19 | 2020-03-20 | 4.6 | 4.05 | — | 4.2 | 0.014 | 2.51 | 229.0 | 0.17 | 20.41 | 0.02 | 1.115 | 151.43 | 28.18 | 10.1 | 84.8 | 5.1 | -1.64 | 0.62 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41388 | 5244 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VFU | 31959 | 2023-10-09 | 2021-09-13 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19946 | 2409 | 9 | 0 | 41 | 0 | 0 | logfile |
✘ | 7XVE | 33484 | 2023-10-06 | 2022-05-21 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13659 | 1569 | 8 | 0 | 42 | 0 | 0 | logfile |
✘ | 6U9W | 20703 | 2023-10-13 | 2019-09-09 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26919 | 1686 | 12 | 3 | 42 | 0 | 12885 | logfile |
✘ | 6ZWo | 11492 | 2023-10-12 | 2020-07-28 | 3.0 | 3.30 | 3.09 | 3.2 | 0.004 | 0.58 | 0.0 | 0.04 | 14.53 | 0.00 | 2.167 | 6.24 | 1.26 | 3.7 | 96.3 | 0.0 | -2.70 | 0.70 | 0.84 | 1.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24994 | 3126 | 7 | 0 | 5 | 0 | 0 | logfile |