Table showing results for March 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7BSP	30163	2023-03-14	2020-03-31	4.0	4.12	—	4.0	0.005	0.66	0.0	0.04	13.90	0.01	1.928	53.93	0.00	14.6	85.4	0.0	-7.27	0.68	0.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11010	1352	5	0	5	0	0	logfile
✘	6X2L	22011	2023-03-13	2020-05-20	2.85	2.95	—	2.9	0.009	0.96	0.0	0.06	13.68	0.01	2.078	2.99	0.00	2.5	97.5	0.0	-6.46	0.64	0.88	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9396	1233	3	0	0	0	0	logfile
✘	5iRX	8117	2023-03-15	2016-03-14	2.95	3.39	2.91	3.3	0.014	1.44	0.0	0.07	15.36	0.01	1.744	9.65	0.00	10.7	89.2	0.1	-6.45	0.67	0.77	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13162	1726	12	0	20	0	0	logfile
✘	6DWB	8924	2023-03-16	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18360	2340	30	0	0	0	0	logfile
✘	7K4D	22665	2023-03-17	2020-09-15	3.66	4.18	—	4.3	0.010	1.22	0.0	0.06	12.05	0.01	2.205	3.98	0.38	9.1	90.9	0.0	-6.15	0.51	0.74	2.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19801	2448	8	0	7	0	0	logfile
✘	7DGZ	30676	2023-03-13	2020-11-12	3.8	4.12	—	4.0	0.008	1.42	3.0	0.07	12.24	0.01	1.238	9.03	1.31	17.6	80.9	1.5	-6.15	0.80	0.71	1.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	60921	7992	61	0	21	0	0	logfile
✘	8AZT	15771	2023-03-12	2022-09-06	3.7	3.48	2.93	4.2	0.011	1.98	0.0	0.11	15.54	0.01	0.000	19.56	4.35	10.3	89.7	0.0	-6.12	0.40	0.59	5.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5424	744	24	0	0	0	0	logfile
✘	6JSi	9882	2023-03-14	2019-04-08	4.7	4.70	—	4.6	0.007	1.48	0.0	0.06	15.33	0.01	2.231	10.68	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62820	5844	9	0	4044	0	0	logfile
✘	6o1N	0593	2023-03-17	2019-02-21	2.9	3.21	—	3.8	0.011	1.37	12.0	0.07	11.02	0.01	1.856	9.13	1.51	6.4	93.1	0.5	-6.01	0.60	0.73	2.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19608	2448	4	0	0	0	0	logfile
✘	7A4A	11630	2023-03-17	2020-08-19	3.76	3.95	3.75	4.0	0.007	0.71	0.0	0.04	11.65	0.01	2.109	13.28	2.96	12.8	87.2	0.0	-6.00	0.69	0.78	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19785	1317	6	0	3	0	9618	logfile
✘	6RDF	4816	2023-03-17	2019-04-12	3.2	3.30	3.25	3.2	0.008	0.89	0.0	0.05	13.40	0.01	2.212	4.09	0.15	4.7	95.2	0.2	-6.00	0.50	0.84	3.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19855	2597	18	0	1	29	0	logfile
✘	6PPL	20442	2023-03-12	2019-07-08	3.02	3.14	—	3.1	0.010	0.99	0.0	0.25	14.17	0.01	1.917	3.20	0.23	2.7	97.3	0.0	-6.00	0.74	0.86	4.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8155	980	6	0	4	0	0	logfile
✘	7K4F	22667	2023-03-17	2020-09-15	3.75	4.23	—	4.2	0.012	1.38	0.0	0.06	12.35	0.01	2.231	4.24	1.50	12.1	87.9	0.0	-5.98	0.57	0.85	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19875	2456	8	0	6	0	0	logfile
✘	5M5H	4155	2023-03-11	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1086	132	1	0	0	0	0	logfile
✘	6oUA	20200	2023-03-12	2019-05-04	4.18	4.32	—	4.3	0.008	1.37	1.0	0.07	13.97	0.01	2.294	7.03	2.35	17.4	82.3	0.3	-5.89	0.72	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5208	637	3	0	0	0	0	logfile
✘	6RDD	4814	2023-03-17	2019-04-12	3.2	3.32	3.04	3.3	0.012	1.03	0.0	0.06	13.79	0.01	2.126	4.62	0.19	4.9	94.8	0.3	-5.88	0.55	0.85	3.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19856	2597	19	0	1	30	0	logfile
✘	6JRS	9880	2023-03-13	2019-04-05	3.7	3.86	—	3.7	0.010	1.08	0.0	0.06	16.39	0.01	2.225	8.77	0.90	12.4	87.2	0.3	-5.87	0.74	0.80	1.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	112168	14652	20	0	24	0	0	logfile
✘	7D06	30525	2023-03-16	2020-09-09	3.1	3.23	—	3.2	0.012	1.54	0.0	0.06	19.08	0.02	2.021	10.56	4.91	10.4	88.6	1.0	-5.86	0.75	0.85	3.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18328	2374	15	0	12	0	0	logfile
✘	6ToA	10542	2023-03-17	2019-12-11	3.47	3.57	—	3.5	0.009	1.24	0.0	0.07	10.85	0.01	2.110	11.06	0.54	11.8	88.0	0.1	-5.85	0.77	0.86	3.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67896	9006	42	0	0	0	0	logfile
✘	6Q6i	4468	2023-03-13	2018-12-11	3.7	3.77	—	3.8	0.009	1.22	0.0	0.06	17.03	0.01	2.244	8.63	1.89	16.7	83.0	0.3	-5.81	0.70	0.74	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57200	7490	10	0	10	0	0	logfile

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