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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7Q4V | 13818 | 2023-03-17 | 2021-11-02 | 4.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.14 | — | — | — | 5.9 | 0.003 | 0.74 | 0.0 | 0.05 | 13.11 | 0.00 | 2.113 | 19.49 | 0.00 | 4.6 | 95.3 | 0.1 | -0.69 | — | 0.76 | 0.77 | — | 19303 | 2520 | 12 | 0 | 24 | 0 | 0 | logfile |
✘ | 7XQ9 | 33391 | 2023-03-17 | 2022-05-07 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.05 | — | — | 2.74 | 3.8 | 0.002 | 0.51 | 0.0 | 0.03 | 15.61 | 0.00 | 2.205 | 4.12 | 0.14 | 2.2 | 97.8 | 0.0 | 3.52 | — | 0.54 | 0.83 | 2.53 | 19632 | 2412 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-03-13 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.009 | 0.80 | 0.0 | 0.04 | 15.73 | 0.01 | 2.058 | 27.11 | 0.04 | 9.4 | 90.2 | 0.4 | -1.85 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 5o9G | 3765 | 2023-03-17 | 2017-06-19 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.25 | — | — | — | 4.8 | 0.004 | 0.80 | 0.0 | 0.04 | 24.58 | 0.01 | 1.106 | 18.06 | 0.00 | 4.4 | 95.5 | 0.1 | -1.54 | — | 0.86 | 0.77 | — | 19681 | 1610 | 11 | 324 | 2 | 0 | 0 | logfile |
✘ | 5TAV | 8386 | 2023-03-16 | 2016-09-10 | 4.8 | 4.96 | 5.58 | 4.7 | 0.004 | 0.89 | 4.0 | 0.05 | 9.80 | 0.01 | 1.373 | 4.75 | 0.39 | 9.7 | 90.1 | 0.2 | -4.80 | 0.77 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121452 | 13500 | 12 | 0 | 3716 | 0 | 0 | logfile |
✘ | 6JHN | 9826 | 2023-03-13 | 2019-02-18 | 4.5 | 7.49 | — | 4.4 | 0.010 | 1.23 | 0.0 | 0.06 | 16.52 | 0.01 | 2.114 | 19.26 | 1.44 | 13.9 | 85.8 | 0.3 | -4.27 | 0.85 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109488 | 14332 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6Ji8 | 9833 | 2023-03-14 | 2019-02-20 | 3.6 | 3.80 | — | 3.7 | 0.010 | 1.26 | 8.0 | 0.06 | 11.98 | 0.01 | 2.196 | 8.60 | 1.03 | 10.5 | 89.0 | 0.5 | -4.77 | 0.73 | 0.77 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115060 | 15024 | 16 | 0 | 4 | 0 | 0 | logfile |
✘ | 7WG5 | 32477 | 2023-03-13 | 2021-12-28 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112687 | 11759 | 92 | 0 | 545 | 0 | 0 | logfile |
✘ | 6JiY | 9837 | 2023-03-14 | 2019-02-24 | 3.9 | 4.05 | — | 3.9 | 0.008 | 1.06 | 1.0 | 0.05 | 15.49 | 0.01 | 2.203 | 7.76 | 0.47 | 12.2 | 87.5 | 0.2 | -5.76 | 0.73 | 0.78 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115288 | 15056 | 20 | 0 | 32 | 0 | 0 | logfile |
✘ | 6JH6 | 9825 | 2023-03-12 | 2019-02-17 | 4.8 | 5.31 | — | 4.8 | 0.006 | 1.07 | 1.0 | 0.05 | 11.37 | 0.01 | 2.197 | 12.11 | 0.58 | 10.8 | 88.9 | 0.3 | -4.03 | 0.79 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108924 | 14244 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 5ZWM | 6972 | 2023-03-13 | 2018-05-16 | 3.4 | 3.37 | — | 3.3 | 0.007 | 1.15 | 10.0 | 0.06 | 12.54 | 0.01 | 1.786 | 18.95 | 0.72 | 5.9 | 93.5 | 0.6 | -3.22 | 0.51 | 0.43 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111041 | 12858 | 61 | 634 | 8 | 0 | 0 | logfile |
✘ | 6JRR | 9879 | 2023-03-12 | 2019-04-05 | 3.9 | 4.09 | — | 3.9 | 0.010 | 1.14 | 4.0 | 0.06 | 15.90 | 0.01 | 1.827 | 8.44 | 0.80 | 10.2 | 89.5 | 0.2 | -5.20 | 0.76 | 0.81 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109132 | 14268 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 7L20 | 23121 | 2023-03-13 | 2020-12-15 | 3.15 | 3.39 | — | 3.4 | 0.007 | 0.87 | 0.0 | 0.05 | 16.21 | 0.01 | 0.505 | 10.97 | 0.84 | 7.3 | 92.2 | 0.5 | -3.38 | 0.69 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110234 | 9454 | 67 | 1583 | 171 | 0 | 0 | logfile |
✘ | 7LiA | 23365 | 2023-03-12 | 2021-01-26 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6279 | 767 | 5 | 0 | 27 | 0 | 0 | logfile |
✘ | 5TAQ | 8382 | 2023-03-16 | 2016-09-10 | 4.1 | 4.24 | 4.25 | 4.1 | 0.005 | 0.97 | 0.0 | 0.05 | 10.16 | 0.01 | 1.373 | 4.58 | 0.43 | 10.9 | 88.9 | 0.2 | -5.26 | 0.76 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✘ | 5TAN | 8380 | 2023-03-16 | 2016-09-10 | 4.3 | 4.50 | 4.44 | 4.3 | 0.005 | 0.91 | 4.0 | 0.05 | 9.88 | 0.01 | 1.372 | 5.67 | 0.47 | 10.4 | 89.4 | 0.2 | -4.91 | 0.80 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✘ | 5XJC | 6721 | 2023-03-15 | 2017-04-30 | 3.6 | 3.69 | 3.82 | 3.6 | 0.013 | 1.58 | 25.0 | 0.10 | 16.70 | 0.01 | 1.113 | 24.22 | 8.13 | 4.9 | 93.3 | 1.8 | -1.84 | 0.46 | 0.53 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 116421 | 14184 | 59 | 405 | 24 | 0 | 0 | logfile |
✘ | 5GM6 | 9524 | 2023-03-13 | 2016-07-12 | 3.5 | 3.61 | — | 3.6 | 0.012 | 1.33 | 11.0 | 0.08 | 13.79 | 0.01 | 1.303 | 18.95 | 3.36 | 6.6 | 92.1 | 1.2 | -3.54 | 0.58 | 0.83 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112064 | 12796 | 55 | 361 | 881 | 0 | 0 | logfile |
✘ | 6XiT | 22200 | 2023-03-17 | 2020-06-21 | 3.3 | 2.22 | — | 3.5 | 0.010 | 0.97 | 0.0 | 0.06 | 14.19 | 0.01 | 1.894 | 10.11 | 0.74 | 4.0 | 96.0 | 0.0 | -3.79 | 0.65 | 0.73 | 3.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10403 | 1308 | 8 | 0 | 7 | 0 | 0 | logfile |
✘ | 6Jii | 9834 | 2023-03-14 | 2019-02-21 | 4.2 | 4.38 | — | 4.1 | 0.008 | 1.12 | 0.0 | 0.06 | 11.41 | 0.01 | 2.208 | 7.63 | 0.57 | 11.2 | 88.4 | 0.4 | -4.07 | 0.78 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115028 | 15012 | 16 | 0 | 16 | 0 | 0 | logfile |