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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7V9A | 31813 | 2023-12-11 | 2021-08-24 | 3.94 | 3.46 | — | 3.4 | 0.002 | 0.58 | 0.0 | 0.03 | 18.68 | 0.00 | 2.260 | 6.87 | 0.00 | 5.2 | 94.8 | 0.0 | -4.05 | 0.66 | 0.57 | 0.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16876 | 1723 | 10 | 146 | 0 | 0 | 0 | logfile |
✘ | 8J03 | 35882 | 2023-12-15 | 2023-04-09 | 2.7 | 2.89 | 2.83 | 3.2 | 0.008 | 0.75 | 0.0 | 0.03 | 18.80 | 0.00 | 1.872 | 12.55 | 2.27 | 4.4 | 95.6 | 0.0 | 1.00 | 0.50 | 0.68 | 1.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30316 | 1892 | 12 | 0 | 4 | 0 | 15084 | logfile |
✘ | 8J00 | 35879 | 2023-12-15 | 2023-04-09 | 3.0 | 3.42 | 3.20 | 3.4 | 0.011 | 0.92 | 0.0 | 0.03 | 19.38 | 0.00 | 1.898 | 10.29 | 0.06 | 2.9 | 97.1 | 0.0 | 2.25 | 0.59 | 0.72 | 1.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30184 | 1876 | 12 | 0 | 8 | 0 | 14944 | logfile |
✘ | 7NAF | 24271 | 2023-12-11 | 2021-06-21 | 3.13 | 3.14 | 3.06 | 3.1 | 0.005 | 0.62 | 0.0 | 0.03 | 20.38 | 0.01 | 2.172 | 7.07 | 0.00 | 4.2 | 95.8 | 0.0 | 0.43 | 0.70 | 0.78 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18868 | 1342 | 17 | 378 | 0 | 2 | 0 | logfile |
✘ | 8FLC | 29274 | 2023-12-15 | 2022-12-21 | 2.76 | 2.78 | 2.87 | 2.9 | 0.007 | 0.76 | 0.0 | 0.03 | 21.63 | 0.03 | 1.975 | 2.57 | 0.00 | 1.5 | 98.5 | 0.0 | 0.65 | 0.82 | 0.82 | 3.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139595 | 7626 | 65 | 3648 | 95 | 0 | 0 | logfile |
✘ | 7DBP | 30161 | 2023-12-10 | 2020-10-21 | 4.5 | 5.32 | — | 4.3 | 0.003 | 0.45 | 0.0 | 0.03 | 27.26 | 0.00 | 2.226 | 8.54 | 0.57 | 4.4 | 94.9 | 0.7 | -0.94 | 0.87 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13801 | 837 | 11 | 350 | 0 | 0 | 0 | logfile |
✘ | 7MBV | 23748 | 2023-12-15 | 2021-04-01 | 2.8 | 3.34 | — | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 12.27 | 0.01 | 2.280 | 6.88 | 0.00 | 2.3 | 97.7 | 0.0 | 1.48 | 0.77 | 0.82 | 3.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30804 | 3984 | 8 | 0 | 24 | 0 | 0 | logfile |
✘ | 7SGR | 25116 | 2023-12-16 | 2021-10-07 | 2.9 | 3.27 | — | 3.2 | 0.007 | 0.79 | 0.0 | 0.04 | 15.21 | 0.01 | 2.202 | 6.45 | 0.00 | 4.7 | 95.3 | 0.0 | 0.89 | 0.65 | 0.78 | 2.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34989 | 4397 | 21 | 0 | 37 | 0 | 0 | logfile |
✘ | 6UMM | 20820 | 2023-12-13 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 11.97 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 7TEo | 25848 | 2023-12-16 | 2022-01-05 | 2.97 | 3.22 | — | 3.2 | 0.003 | 0.55 | 0.0 | 0.04 | 12.70 | 0.00 | 1.883 | 4.54 | 0.00 | 1.6 | 98.4 | 0.0 | 0.93 | 0.71 | 0.79 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97522 | 6288 | 30 | 0 | 0 | 0 | 48612 | logfile |
✘ | 7X6A | 33019 | 2023-12-15 | 2022-03-07 | 3.5 | 3.86 | — | 3.8 | 0.002 | 0.52 | 0.0 | 0.04 | 14.04 | 0.00 | 1.981 | 7.25 | 0.06 | 6.2 | 93.5 | 0.4 | -1.29 | 0.76 | 0.78 | 1.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30879 | 3969 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CYD | 27075 | 2023-12-14 | 2022-05-23 | 2.6 | 3.24 | 2.62 | 3.0 | 0.002 | 0.51 | 0.0 | 0.04 | 12.52 | 0.01 | 1.930 | 6.47 | 0.32 | 4.9 | 94.7 | 0.4 | 0.04 | 0.77 | 0.79 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28454 | 3663 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7LB5 | 23263 | 2023-12-13 | 2021-01-07 | 3.16 | 4.00 | — | 3.7 | 0.003 | 0.52 | 0.0 | 0.04 | 14.28 | 0.00 | 2.323 | 7.12 | 0.93 | 1.9 | 98.1 | 0.0 | -1.95 | 0.87 | 0.84 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23616 | 3120 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WSF | 32756 | 2023-12-10 | 2022-01-29 | 2.87 | 3.08 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.04 | 11.23 | 0.00 | 2.016 | 6.14 | 3.87 | 2.7 | 97.3 | 0.0 | -0.12 | 0.72 | 0.81 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7170 | 879 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 7o4L | 12722 | 2023-12-16 | 2021-04-06 | 3.4 | 3.17 | 3.35 | 3.1 | 0.002 | 0.45 | 0.0 | 0.04 | 14.10 | 0.00 | 2.001 | 4.13 | 0.00 | 2.3 | 97.7 | 0.0 | 2.39 | 0.69 | 0.73 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35159 | 4330 | 25 | 20 | 15 | 0 | 0 | logfile |
✘ | 7XKR | 33265 | 2023-12-13 | 2022-04-20 | 2.6 | 3.37 | 2.59 | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 12.97 | 0.00 | 2.006 | 3.17 | 0.00 | 1.6 | 98.4 | 0.0 | 1.93 | 0.86 | 0.90 | 3.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25246 | 3257 | 14 | 0 | 11 | 0 | 0 | logfile |
✘ | 7UZ9 | 26883 | 2023-12-15 | 2022-05-08 | 3.5 | 4.40 | 3.63 | 4.5 | 0.003 | 0.59 | 0.0 | 0.04 | 15.47 | 0.00 | 2.175 | 10.65 | 0.03 | 2.8 | 97.2 | 0.0 | 0.31 | 0.66 | 0.73 | 1.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30669 | 3873 | 12 | 0 | 42 | 0 | 0 | logfile |
✘ | 7SL7 | 25193 | 2023-12-11 | 2021-10-22 | 3.1 | 3.35 | — | 3.4 | 0.002 | 0.56 | 0.0 | 0.04 | 13.08 | 0.00 | 2.149 | 8.91 | 0.24 | 5.5 | 94.2 | 0.3 | -0.86 | 0.77 | 0.82 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14732 | 1826 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 7oF0 | 12865 | 2023-12-16 | 2021-05-04 | 2.2 | 3.01 | 2.23 | 2.8 | 0.005 | 0.59 | 0.0 | 0.04 | 18.47 | 0.00 | 1.851 | 7.32 | 0.08 | 2.7 | 97.3 | 0.0 | 1.19 | 0.86 | 0.87 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99476 | 8446 | 62 | 1432 | 64 | 0 | 0 | logfile |
✘ | 8EoS | 28466 | 2023-12-13 | 2022-10-04 | 3.1 | 3.84 | 3.11 | 3.5 | 0.005 | 0.57 | 0.0 | 0.04 | 15.23 | 0.00 | 1.840 | 20.11 | 3.59 | 5.2 | 94.7 | 0.2 | -0.81 | 0.90 | 0.89 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25606 | 3069 | 11 | 87 | 5 | 0 | 0 | logfile |