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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7U9X | 26409 | 2023-12-14 | 2022-03-11 | 2.58 | 2.84 | — | 1.7 | 0.003 | 0.61 | 0.0 | 0.04 | 14.38 | 0.00 | 2.080 | 9.25 | 0.11 | 2.3 | 97.7 | 0.0 | 1.30 | 0.87 | 0.83 | 3.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138588 | 17324 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 7V9A | 31813 | 2023-12-11 | 2021-08-24 | 3.94 | 3.46 | — | 3.4 | 0.002 | 0.58 | 0.0 | 0.03 | 18.68 | 0.00 | 2.260 | 6.87 | 0.00 | 5.2 | 94.8 | 0.0 | -4.05 | 0.66 | 0.57 | 0.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16876 | 1723 | 10 | 146 | 0 | 0 | 0 | logfile |
✘ | 7NAF | 24271 | 2023-12-11 | 2021-06-21 | 3.13 | 3.14 | 3.06 | 3.1 | 0.005 | 0.62 | 0.0 | 0.03 | 20.38 | 0.01 | 2.172 | 7.07 | 0.00 | 4.2 | 95.8 | 0.0 | 0.43 | 0.70 | 0.78 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18868 | 1342 | 17 | 378 | 0 | 2 | 0 | logfile |
✘ | 6VL6 | 21231 | 2023-12-12 | 2020-01-22 | 4.6 | 5.00 | 4.54 | 4.6 | 0.019 | 1.46 | 0.0 | 0.09 | 11.38 | 0.01 | 2.431 | 0.59 | 0.00 | 0.9 | 99.1 | 0.0 | 0.45 | 0.87 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21504 | 2640 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JQL | 9873 | 2023-12-15 | 2019-03-31 | 2.9 | 3.07 | — | 3.1 | 0.004 | 0.81 | 0.0 | 0.05 | 10.10 | 0.01 | 2.305 | 6.74 | 0.16 | 4.8 | 95.2 | 0.0 | -4.01 | 0.77 | 0.84 | 3.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30648 | 4068 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 5WP6 | 8871 | 2023-12-14 | 2017-08-03 | 3.8 | 4.03 | — | 3.8 | 0.062 | 4.81 | 0.0 | 0.06 | 10.88 | 0.01 | 2.083 | 3.10 | 0.30 | 6.7 | 93.3 | 0.0 | -3.61 | 0.70 | 0.83 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29036 | 3908 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 8D8R | 27255 | 2023-12-07 | 2022-06-08 | 4.1 | 4.18 | 1.95 | 4.1 | 0.011 | 1.25 | 0.0 | 0.06 | 10.92 | 0.01 | 2.512 | 1.08 | 0.00 | 2.1 | 97.9 | 0.0 | 1.96 | 0.59 | 0.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3323 | 425 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8DRA | 27675 | 2023-12-09 | 2022-07-20 | 3.98 | 4.17 | 3.98 | 4.0 | 0.003 | 0.77 | 0.0 | 0.05 | 15.74 | 0.01 | 2.257 | 11.58 | 0.35 | 5.4 | 94.6 | 0.0 | -3.01 | 0.63 | 0.69 | 0.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9899 | 1218 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6UMM | 20820 | 2023-12-13 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 11.97 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EM4 | 28233 | 2023-12-08 | 2022-09-26 | 2.83 | 3.60 | 2.87 | 2.8 | 0.005 | 0.99 | 0.0 | 0.06 | 11.79 | 0.01 | 2.135 | 1.14 | 0.13 | 4.5 | 95.5 | 0.0 | -0.47 | 0.72 | 0.66 | 2.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 59410 | 7636 | 6 | 0 | 178 | 0 | 0 | logfile |
✘ | 8F3D | 28846 | 2023-12-08 | 2022-11-09 | 3.4 | 2.64 | 3.48 | 3.3 | 0.005 | 0.93 | 0.0 | 0.05 | 13.03 | 0.01 | 1.784 | 21.50 | 0.39 | 9.3 | 90.7 | 0.0 | -1.29 | 0.57 | 0.62 | 0.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57846 | 7464 | 18 | 0 | 6 | 0 | 0 | logfile |
✘ | 7S6J | 24877 | 2023-12-15 | 2021-09-14 | 3.4 | 3.70 | 3.47 | 3.6 | 0.020 | 1.80 | 0.0 | 0.11 | 9.98 | 0.01 | 2.401 | 0.72 | 0.18 | 4.0 | 96.0 | 0.0 | 0.16 | 0.80 | 0.82 | 2.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30795 | 3894 | 21 | 0 | 33 | 0 | 0 | logfile |
✘ | 6PUY | 20484 | 2023-12-09 | 2019-07-18 | 2.8 | 3.15 | 2.88 | 3.1 | 0.015 | 0.90 | 0.0 | 0.06 | 19.87 | 0.01 | 0.000 | 4.36 | 0.19 | 3.0 | 97.0 | 0.0 | -3.07 | 0.75 | 0.90 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11784 | 1232 | 28 | 72 | 10 | 404 | 0 | logfile |
✘ | 7SGR | 25116 | 2023-12-16 | 2021-10-07 | 2.9 | 3.27 | — | 3.2 | 0.007 | 0.79 | 0.0 | 0.04 | 15.21 | 0.01 | 2.202 | 6.45 | 0.00 | 4.7 | 95.3 | 0.0 | 0.89 | 0.65 | 0.78 | 2.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34989 | 4397 | 21 | 0 | 37 | 0 | 0 | logfile |
✘ | 7S6L | 24879 | 2023-12-13 | 2021-09-14 | 4.0 | 4.77 | 4.03 | 4.2 | 0.020 | 1.74 | 0.0 | 0.11 | 9.97 | 0.01 | 2.336 | 0.63 | 0.04 | 2.2 | 97.8 | 0.0 | 0.74 | 0.84 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24755 | 3117 | 15 | 0 | 30 | 0 | 0 | logfile |
✘ | 6XL9 | 22236 | 2023-12-16 | 2020-06-28 | 2.5 | 3.20 | — | 3.1 | 0.008 | 0.90 | 0.0 | 0.06 | 17.12 | 0.01 | 2.025 | 5.93 | 0.00 | 1.0 | 98.9 | 0.0 | -3.38 | 0.71 | 0.81 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35113 | 4137 | 18 | 110 | 8 | 21 | 0 | logfile |
✘ | 7W92 | 32359 | 2023-12-13 | 2021-12-09 | 3.1 | 2.79 | — | 3.3 | 0.003 | 0.67 | 0.0 | 0.05 | 13.05 | 0.01 | 2.306 | 2.89 | 0.11 | 3.7 | 96.3 | 0.0 | -4.34 | 0.80 | 0.76 | 2.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25071 | 3206 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7S6K | 24878 | 2023-12-15 | 2021-09-14 | 3.4 | 3.64 | 3.40 | 3.6 | 0.020 | 1.79 | 0.0 | 0.11 | 9.77 | 0.01 | 2.392 | 0.89 | 0.00 | 3.4 | 96.6 | 0.0 | 0.43 | 0.80 | 0.82 | 3.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30903 | 3885 | 24 | 0 | 45 | 0 | 0 | logfile |
✘ | 6TDW | 10469 | 2023-12-10 | 2019-11-10 | 3.8 | 4.05 | 3.54 | 4.0 | 0.007 | 0.84 | 0.0 | 0.08 | 13.71 | 0.01 | 2.078 | 4.92 | 0.15 | 7.2 | 92.8 | 0.0 | -1.91 | 0.70 | 0.78 | 1.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12997 | 841 | 7 | 0 | 0 | 0 | 6561 | logfile |
✘ | 7PHP | 13424 | 2023-12-08 | 2021-08-18 | 3.47 | 3.48 | — | 3.6 | 0.017 | 0.90 | 0.0 | 0.05 | 14.25 | 0.01 | 2.182 | 6.60 | 0.11 | 7.0 | 93.0 | 0.0 | -1.50 | 0.72 | 0.83 | 3.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8647 | 1134 | 8 | 0 | 0 | 21 | 0 | logfile |