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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7X6Q | 33025 | 2023-12-09 | 2022-03-08 | 4.5 | 4.41 | 4.61 | 4.3 | 0.009 | 0.73 | 0.0 | 0.06 | 9.96 | 0.00 | 2.197 | 0.93 | 0.01 | 3.2 | 96.7 | 0.2 | -0.87 | 0.78 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64472 | 8440 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7EQ9 | 31256 | 2023-12-09 | 2021-04-30 | 3.3 | 3.70 | 3.42 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 15.65 | 0.00 | 2.267 | 3.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.85 | 0.60 | 0.53 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62520 | 7620 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CVP | 27012 | 2023-12-09 | 2022-05-18 | 3.4 | 3.75 | 3.50 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 13.05 | 0.00 | 2.231 | 4.87 | 0.12 | 6.1 | 93.8 | 0.1 | -1.69 | 0.69 | 0.74 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10112 | 1484 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 8A01 | 15044 | 2023-12-07 | 2022-05-26 | 3.2 | 3.25 | 3.20 | 3.2 | 0.002 | 0.44 | 0.0 | 0.05 | 14.81 | 0.00 | 2.289 | 4.13 | 0.00 | 2.0 | 98.0 | 0.0 | 0.02 | 0.48 | 0.86 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5511 | 717 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8H38 | 34455 | 2023-12-17 | 2022-10-08 | 4.25 | 4.19 | 4.35 | 4.3 | 0.004 | 0.70 | 2.0 | 0.05 | 13.05 | 0.00 | 1.986 | 10.28 | 2.22 | 6.5 | 92.8 | 0.7 | -0.18 | 0.62 | 0.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37306 | 4639 | 15 | 0 | 4 | 0 | 0 | logfile |
✘ | 7DCC | 30635 | 2023-12-16 | 2020-10-24 | 4.3 | 4.77 | — | 4.1 | 0.002 | 0.48 | 0.0 | 0.04 | 7.38 | 0.00 | 2.279 | 3.10 | 1.39 | 2.3 | 97.7 | 0.0 | -4.06 | 0.73 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35019 | 4485 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 6XWR | 10636 | 2023-12-09 | 2020-01-24 | 3.22 | 3.96 | — | 3.7 | 0.008 | 0.75 | 0.0 | 0.05 | 12.81 | 0.00 | 2.122 | 11.13 | 0.00 | 5.7 | 94.3 | 0.0 | -2.71 | 0.74 | 0.85 | 2.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9564 | 1278 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RPW | 24624 | 2023-12-09 | 2021-08-04 | 4.38 | 4.64 | — | 4.4 | 0.003 | 0.57 | 0.0 | 0.04 | 19.29 | 0.00 | 1.756 | 18.05 | 9.97 | 11.3 | 88.6 | 0.1 | -2.82 | 0.77 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10594 | 1179 | 10 | 62 | 5 | 0 | 0 | logfile |
✘ | 7WMP | 32616 | 2023-12-16 | 2022-01-15 | 3.6 | 3.34 | — | 3.3 | 0.005 | 0.79 | 0.0 | 0.05 | 16.33 | 0.00 | 2.038 | 7.53 | 1.32 | 7.4 | 92.6 | 0.0 | -2.54 | 0.71 | 0.85 | 1.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.65 | — | — | — | 1.10 | 98184 | 12204 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VNJ | 32041 | 2023-12-15 | 2021-10-11 | 2.56 | 2.25 | — | 2.5 | 0.003 | 0.52 | 0.0 | 0.04 | 13.80 | 0.00 | 2.166 | 5.63 | 0.40 | 5.0 | 95.0 | 0.0 | -0.46 | 0.69 | 0.78 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30661 | 3856 | 15 | 0 | 21 | 0 | 0 | logfile |
✘ | 7ZN2 | 14799 | 2023-12-15 | 2022-04-20 | 4.29 | 3.73 | 4.16 | 3.5 | 0.003 | 0.52 | 0.0 | 0.04 | 13.12 | 0.00 | 2.048 | 7.87 | 0.00 | 3.5 | 96.5 | 0.0 | -1.30 | 0.80 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 89393 | 11481 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 8FYB | 29563 | 2023-12-10 | 2023-01-25 | 3.1 | 3.33 | 3.15 | 3.3 | 0.004 | 0.60 | 0.0 | 0.04 | 20.88 | 0.00 | 2.211 | 12.15 | 0.09 | 3.6 | 96.4 | 0.0 | 0.63 | 0.71 | 0.78 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13486 | 1359 | 10 | 136 | 0 | 0 | 0 | logfile |
✘ | 8DDW | 27344 | 2023-12-13 | 2022-06-19 | 4.7 | 4.19 | 4.62 | 4.0 | 0.003 | 0.53 | 0.0 | 0.04 | 14.47 | 0.00 | 2.179 | 11.42 | 8.35 | 5.4 | 94.5 | 0.1 | 0.15 | 0.72 | 0.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25869 | 3198 | 10 | 0 | 68 | 0 | 0 | logfile |
✘ | 7Y7W | 33672 | 2023-12-07 | 2022-06-22 | 2.4 | 2.70 | 2.46 | 2.7 | 0.006 | 0.78 | 0.0 | 0.08 | 17.20 | 0.00 | 1.907 | 5.88 | 1.11 | 3.0 | 97.0 | 0.0 | 0.06 | 0.68 | 0.85 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4310 | 529 | 1 | 0 | 7 | 48 | 0 | logfile |
✘ | 7TBY | 25801 | 2023-12-10 | 2021-12-22 | 4.0 | 4.05 | 3.80 | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 13.87 | 0.00 | 2.155 | 7.36 | 0.00 | 5.0 | 95.0 | 0.0 | -2.45 | 0.70 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13281 | 1788 | 4 | 0 | 10 | 0 | 0 | logfile |
✘ | 7VQ5 | 32086 | 2023-12-08 | 2021-10-19 | 3.1 | 3.31 | — | 3.3 | 0.009 | 0.77 | 0.0 | 0.05 | 14.85 | 0.00 | 2.110 | 7.38 | 0.14 | 7.4 | 92.6 | 0.0 | -3.56 | 0.66 | 0.84 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6315 | 800 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 6PP6 | 20420 | 2023-12-15 | 2019-07-05 | 4.28 | 4.54 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.04 | 12.43 | 0.00 | 2.179 | 3.17 | 0.00 | 0.6 | 99.4 | 0.0 | -1.13 | 0.79 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32106 | 2062 | 13 | 0 | 12 | 0 | 16126 | logfile |
✘ | 7oE7 | 12861 | 2023-12-09 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 8AXN | 15702 | 2023-12-16 | 2022-08-31 | 3.34 | 3.51 | 3.30 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 9.93 | 0.00 | 2.125 | 6.78 | 3.52 | 5.4 | 94.6 | 0.0 | -0.25 | 0.76 | 0.84 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94656 | 11704 | 64 | 0 | 0 | 0 | 0 | logfile |
✘ | 8F1i | 28797 | 2023-12-15 | 2022-11-05 | 3.0 | 3.91 | — | 3.4 | 0.003 | 0.53 | 0.0 | 0.04 | 14.60 | 0.00 | 2.170 | 5.59 | 0.89 | 3.4 | 96.6 | 0.0 | -1.10 | 0.88 | 0.84 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30670 | 3678 | 14 | 91 | 3 | 8 | 0 | logfile |