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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7D65 | 30589 | 2023-12-14 | 2020-09-29 | 2.94 | 3.09 | — | 3.2 | 0.008 | 0.94 | 0.0 | 0.05 | 16.96 | 0.01 | 2.328 | 1.94 | 0.14 | 4.3 | 95.7 | 0.0 | -7.00 | 0.66 | 0.81 | 2.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26664 | 3168 | 22 | 0 | 55 | 0 | 0 | logfile |
✘ | 6PVN | 20494 | 2023-12-12 | 2019-07-21 | 4.07 | 4.15 | — | 4.1 | 0.006 | 1.33 | 0.0 | 0.06 | 12.87 | 0.01 | 2.256 | 4.31 | 1.23 | 14.2 | 85.3 | 0.5 | -6.84 | 0.68 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20874 | 2576 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 6HYD | 0308 | 2023-12-09 | 2018-10-19 | 3.9 | 4.01 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.05 | 9.33 | 0.01 | 2.319 | 2.63 | 0.24 | 5.7 | 94.0 | 0.3 | -6.69 | 0.74 | 0.77 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12168 | 1543 | 1 | 0 | 31 | 0 | 0 | logfile |
✘ | 6X2L | 22011 | 2023-12-08 | 2020-05-20 | 2.85 | 2.95 | — | 2.9 | 0.009 | 0.96 | 0.0 | 0.06 | 13.68 | 0.01 | 2.078 | 2.99 | 0.00 | 2.5 | 97.5 | 0.0 | -6.46 | 0.64 | 0.88 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9396 | 1233 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6M23 | 30061 | 2023-12-10 | 2020-02-26 | 3.2 | 3.49 | — | 3.3 | 0.010 | 1.12 | 0.0 | 0.07 | 14.89 | 0.01 | 2.216 | 8.07 | 2.32 | 10.7 | 87.8 | 1.5 | -6.36 | 0.68 | 0.79 | 2.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14744 | 1872 | 12 | 0 | 18 | 2 | 0 | logfile |
✘ | 6NEF | 9357 | 2023-12-14 | 2018-12-17 | 3.4 | 3.55 | — | 3.5 | 0.021 | 1.83 | 0.0 | 0.07 | 16.56 | 0.01 | 1.696 | 41.21 | 0.04 | 24.1 | 72.2 | 3.7 | -6.35 | 0.42 | 0.36 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29457 | 3663 | 9 | 0 | 63 | 0 | 0 | logfile |
✘ | 6VoY | 21301 | 2023-12-11 | 2020-02-01 | 3.7 | 4.09 | — | 4.0 | 0.013 | 1.52 | 30.0 | 0.10 | 24.62 | 0.01 | 1.583 | 35.03 | 0.46 | 2.4 | 97.6 | 0.0 | -6.32 | 0.69 | 0.82 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17556 | 1724 | 16 | 180 | 6 | 0 | 0 | logfile |
✘ | 6o72 | 0638 | 2023-12-14 | 2019-03-07 | 3.0 | 3.18 | — | 3.2 | 0.009 | 1.20 | 0.0 | 0.06 | 16.34 | 0.01 | 2.062 | 8.40 | 0.00 | 7.4 | 92.6 | 0.0 | -6.25 | 0.63 | 0.80 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28592 | 3432 | 8 | 0 | 28 | 0 | 0 | logfile |
✘ | 8AZT | 15771 | 2023-12-07 | 2022-09-06 | 3.7 | 3.48 | 2.93 | 4.2 | 0.011 | 1.98 | 0.0 | 0.11 | 15.54 | 0.01 | 0.000 | 19.56 | 4.35 | 10.3 | 89.7 | 0.0 | -6.12 | 0.40 | 0.59 | 5.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5424 | 744 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JSi | 9882 | 2023-12-09 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✘ | 6BBM | 7076 | 2023-12-13 | 2017-10-18 | 4.1 | 4.24 | — | 4.1 | 0.008 | 1.20 | 0.0 | 0.06 | 16.70 | 0.01 | 2.231 | 9.86 | 0.58 | 13.8 | 86.1 | 0.2 | -5.97 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23956 | 2662 | 15 | 0 | 623 | 0 | 0 | logfile |
✘ | 6oUA | 20200 | 2023-12-07 | 2019-05-04 | 4.18 | 4.32 | — | 4.3 | 0.008 | 1.37 | 1.0 | 0.07 | 13.97 | 0.01 | 2.294 | 7.03 | 2.35 | 17.4 | 82.3 | 0.3 | -5.89 | 0.72 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5208 | 637 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JRS | 9880 | 2023-12-08 | 2019-04-05 | 3.7 | 3.86 | — | 3.7 | 0.010 | 1.08 | 0.0 | 0.06 | 16.41 | 0.01 | 2.225 | 8.77 | 0.90 | 12.4 | 87.2 | 0.3 | -5.87 | 0.74 | 0.80 | 1.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112168 | 14652 | 20 | 0 | 24 | 0 | 0 | logfile |
✘ | 6Q6i | 4468 | 2023-12-08 | 2018-12-11 | 3.7 | 3.77 | — | 3.8 | 0.009 | 1.22 | 0.0 | 0.06 | 17.03 | 0.01 | 2.244 | 8.63 | 1.89 | 16.7 | 83.0 | 0.3 | -5.81 | 0.70 | 0.74 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57200 | 7490 | 10 | 0 | 10 | 0 | 0 | logfile |
✘ | 6ZY9 | 11555 | 2023-12-10 | 2020-07-30 | 3.3 | 3.42 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 13.73 | 0.01 | 2.174 | 2.45 | 0.25 | 4.7 | 95.3 | 0.0 | -5.76 | 0.62 | 0.71 | 1.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14973 | 1985 | 14 | 0 | 4 | 0 | 0 | logfile |
✘ | 6JiY | 9837 | 2023-12-09 | 2019-02-24 | 3.9 | 4.05 | — | 3.9 | 0.008 | 1.06 | 1.0 | 0.05 | 15.54 | 0.01 | 2.203 | 7.76 | 0.47 | 12.2 | 87.5 | 0.2 | -5.76 | 0.73 | 0.78 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115288 | 15056 | 20 | 0 | 32 | 0 | 0 | logfile |
✘ | 6CB8 | 7449 | 2023-12-16 | 2018-02-02 | 3.8 | 4.11 | — | 4.7 | 0.006 | 0.84 | 0.0 | 0.05 | 11.71 | 0.01 | 1.542 | 37.90 | 0.00 | 18.6 | 81.4 | 0.0 | -5.72 | 0.54 | 0.27 | 0.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100224 | 6210 | 27 | 0 | 27 | 0 | 50436 | logfile |
✘ | 6iRS | 9721 | 2023-12-08 | 2018-11-14 | 3.3 | 3.44 | — | 3.4 | 0.011 | 1.36 | 0.0 | 0.07 | 14.19 | 0.01 | 2.150 | 13.11 | 3.66 | 8.8 | 90.3 | 0.9 | -5.69 | 0.62 | 0.77 | 2.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7337 | 926 | 7 | 0 | 10 | 0 | 0 | logfile |
✘ | 6JCV | 9798 | 2023-12-15 | 2019-01-30 | 2.92 | 4.05 | — | 3.7 | 0.007 | 0.90 | 0.0 | 0.06 | 13.94 | 0.01 | 2.341 | 5.00 | 0.00 | 5.2 | 94.8 | 0.0 | -5.68 | 0.87 | 0.86 | 3.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30876 | 3912 | 31 | 0 | 24 | 96 | 0 | logfile |
✘ | 7U5U | 26359 | 2023-12-12 | 2022-03-02 | 3.16 | 3.37 | 3.21 | 3.4 | 0.007 | 0.88 | 0.0 | 0.06 | 15.34 | 0.01 | 2.279 | 5.12 | 0.00 | 5.5 | 94.5 | 0.0 | -5.67 | 0.67 | 0.77 | 3.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10035 | 1283 | 2 | 0 | 0 | 0 | 0 | logfile |