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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6o7K | 0643 | 2023-12-08 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.004 | 0.66 | 0.0 | 0.04 | 21.59 | 0.00 | 2.070 | 19.23 | 0.00 | 8.0 | 91.6 | 0.5 | -1.26 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 7MDi | 23773 | 2023-12-15 | 2021-04-05 | 4.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.24 | — | — | — | 4.3 | 0.004 | 0.64 | 0.0 | 0.04 | 13.92 | 0.00 | 1.853 | 10.97 | 0.00 | 12.7 | 87.3 | 0.0 | -1.91 | — | 0.79 | 0.82 | — | 30608 | 4348 | 20 | 0 | 24 | 24 | 0 | logfile |
✘ | 6K9L | 9950 | 2023-12-15 | 2019-06-16 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -3.11 | — | — | — | 4.2 | 0.002 | 0.68 | 0.0 | 0.04 | 9.69 | 0.00 | 2.113 | 12.22 | 0.00 | 7.1 | 92.9 | 0.0 | 0.72 | — | 0.85 | 0.75 | — | 30601 | 5103 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7V88 | 31793 | 2023-12-16 | 2021-08-22 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.29 | — | — | 1.72 | 3.6 | 0.006 | 0.67 | 0.0 | 0.04 | 14.88 | 0.00 | 2.082 | 11.01 | 0.16 | 6.7 | 93.3 | 0.0 | -0.23 | — | 0.86 | 0.86 | 1.51 | 35098 | 4281 | 47 | 0 | 89 | 0 | 0 | logfile |
✘ | 7UVV | 26817 | 2023-12-14 | 2022-05-02 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.74 | — | — | 3.70 | 2.6 | 0.006 | 0.69 | 0.0 | 0.04 | 21.89 | 0.01 | 2.050 | 4.72 | 3.60 | 3.1 | 96.8 | 0.1 | 0.71 | — | 0.92 | 0.93 | 3.57 | 138294 | 5500 | 56 | 4447 | 3 | 0 | 0 | logfile |
✘ | 7WoB | 32647 | 2023-12-16 | 2022-01-21 | 3.25 | 2.88 | — | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 9.46 | 0.00 | 2.243 | 7.02 | 4.57 | 5.0 | 95.0 | 0.0 | -3.68 | 0.85 | 0.77 | 2.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35134 | 4476 | 12 | 0 | 38 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2023-12-12 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 22.51 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 6RBE | 4795 | 2023-12-12 | 2019-04-10 | 3.8 | 3.81 | 4.03 | 5.1 | 0.007 | 1.27 | 0.0 | 0.06 | 22.51 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.38 | 0.09 | 0.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 5YKE | 6831 | 2023-12-15 | 2017-10-14 | 4.11 | 4.22 | 3.92 | 4.1 | 0.005 | 0.81 | 0.0 | 0.05 | 13.61 | 0.01 | 2.246 | 11.57 | 7.60 | 3.7 | 95.9 | 0.4 | -1.76 | 0.66 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30636 | 3912 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 6S1N | 10081 | 2023-12-12 | 2019-06-19 | 4.86 | 4.98 | — | 4.8 | 0.009 | 1.13 | 2.0 | 0.06 | 18.02 | 0.01 | 1.929 | 9.59 | 0.83 | 6.3 | 93.4 | 0.4 | -3.47 | 0.73 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19726 | 2399 | 11 | 50 | 3 | 0 | 0 | logfile |
✘ | 7DGR | 30674 | 2023-12-07 | 2020-11-12 | 4.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 107305 | 13811 | 102 | 0 | 37 | 0 | 0 | logfile |
✘ | 5XNN | 6743 | 2023-12-09 | 2017-05-23 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10020 | 854 | 8 | 0 | 72 | 0 | 0 | logfile |
✘ | 7B1G | 11985 | 2023-12-12 | 2020-11-24 | 3.6 | 3.70 | — | 3.6 | 0.006 | 0.72 | 0.0 | 0.05 | 15.84 | 0.00 | 2.213 | 12.50 | 0.09 | 7.4 | 92.6 | 0.0 | -2.22 | 0.79 | 0.85 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21661 | 2689 | 9 | 0 | 8 | 0 | 0 | logfile |
✘ | 7XX2 | 33498 | 2023-12-16 | 2022-05-28 | 3.6 | 3.49 | 3.64 | 3.3 | 0.006 | 0.95 | 4.0 | 0.06 | 14.51 | 0.01 | 2.033 | 16.70 | 1.27 | 9.9 | 90.0 | 0.0 | -1.28 | 0.86 | 0.82 | 1.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36436 | 4528 | 11 | 0 | 5 | 0 | 0 | logfile |
✘ | 7VYH | 32205 | 2023-12-14 | 2021-11-14 | 2.9 | 3.02 | — | 3.1 | 0.007 | 0.74 | 0.0 | 0.05 | 14.62 | 0.01 | 2.198 | 8.58 | 0.00 | 3.6 | 96.3 | 0.1 | 0.11 | 0.75 | 0.86 | 3.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27933 | 3488 | 27 | 0 | 16 | 0 | 0 | logfile |
✘ | 6YBD | 10769 | 2023-12-15 | 2020-03-16 | 3.3 | 3.91 | 3.79 | 3.8 | 0.009 | 1.08 | 0.0 | 0.06 | 15.55 | 0.01 | 2.262 | 5.95 | 0.55 | 9.3 | 90.6 | 0.2 | -4.02 | 0.51 | 0.72 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30742 | 4421 | 19 | 0 | 0 | 0 | 0 | logfile |
✘ | 6UH5 | 20767 | 2023-12-13 | 2019-09-26 | 3.5 | 3.78 | — | 3.5 | 0.011 | 1.40 | 38.0 | 0.09 | 23.79 | 0.01 | 1.749 | 10.50 | 2.23 | 5.2 | 94.5 | 0.3 | -4.70 | 0.86 | 0.81 | 1.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24466 | 2320 | 21 | 292 | 2 | 0 | 0 | logfile |
✘ | 6K7M | 9941 | 2023-12-09 | 2019-06-07 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10591 | 1307 | 5 | 0 | 9 | 0 | 0 | logfile |
✘ | 5H1S | 9572 | 2023-12-15 | 2016-10-11 | 3.5 | 3.54 | — | 3.5 | 0.010 | 1.06 | 1.0 | 0.07 | 24.81 | 0.01 | 1.028 | 46.50 | 3.21 | 16.7 | 81.7 | 1.6 | -4.90 | 0.78 | 0.77 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 90825 | 3276 | 32 | 3018 | 0 | 0 | 0 | logfile |
✘ | 6UZV | 20963 | 2023-12-12 | 2019-11-15 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72606 | 6711 | 60 | 0 | 408 | 0 | 0 | logfile |