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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7UVV | 26817 | 2023-12-14 | 2022-05-02 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.74 | — | — | 3.70 | 2.6 | 0.006 | 0.69 | 0.0 | 0.04 | 21.89 | 0.01 | 2.050 | 4.72 | 3.60 | 3.1 | 96.8 | 0.1 | 0.71 | — | 0.92 | 0.93 | 3.57 | 138294 | 5500 | 56 | 4447 | 3 | 0 | 0 | logfile |
✘ | 7MDi | 23773 | 2023-12-15 | 2021-04-05 | 4.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.24 | — | — | — | 4.3 | 0.004 | 0.64 | 0.0 | 0.04 | 13.92 | 0.00 | 1.853 | 10.97 | 0.00 | 12.7 | 87.3 | 0.0 | -1.91 | — | 0.79 | 0.82 | — | 30608 | 4348 | 20 | 0 | 24 | 24 | 0 | logfile |
✘ | 7V88 | 31793 | 2023-12-16 | 2021-08-22 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.29 | — | — | 1.72 | 3.6 | 0.006 | 0.67 | 0.0 | 0.04 | 14.88 | 0.00 | 2.082 | 11.01 | 0.16 | 6.7 | 93.3 | 0.0 | -0.23 | — | 0.86 | 0.86 | 1.51 | 35098 | 4281 | 47 | 0 | 89 | 0 | 0 | logfile |
✘ | 6K9L | 9950 | 2023-12-15 | 2019-06-16 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -3.11 | — | — | — | 4.2 | 0.002 | 0.68 | 0.0 | 0.04 | 9.69 | 0.00 | 2.113 | 12.22 | 0.00 | 7.1 | 92.9 | 0.0 | 0.72 | — | 0.85 | 0.75 | — | 30601 | 5103 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-12-08 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.004 | 0.66 | 0.0 | 0.04 | 21.59 | 0.00 | 2.070 | 19.23 | 0.00 | 8.0 | 91.6 | 0.5 | -1.26 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 7ZDF | 14644 | 2023-12-08 | 2022-03-29 | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9039 | 1159 | 2 | 0 | 3 | 0 | 0 | logfile |
✘ | 7EWP | 31360 | 2023-12-13 | 2021-05-25 | 4.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20179 | 1816 | 4 | 0 | 0 | 0 | 6804 | logfile |
✘ | 7XG3 | 33184 | 2023-12-14 | 2022-04-02 | 3.0 | 2.77 | 3.04 | 3.0 | 0.007 | 1.12 | 0.0 | 0.07 | 20.10 | 0.01 | 1.641 | 22.81 | 1.26 | 4.1 | 95.9 | 0.0 | -2.38 | 0.74 | 0.68 | 1.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24368 | 2839 | 13 | 128 | 1 | 0 | 0 | logfile |
✘ | 6oSY | 20189 | 2023-12-15 | 2019-05-02 | 4.3 | 4.54 | 4.35 | 4.4 | 0.014 | 1.52 | 0.0 | 0.09 | 16.12 | 0.01 | 2.290 | 6.39 | 2.64 | 9.6 | 90.4 | 0.0 | -3.58 | 0.77 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32463 | 3834 | 78 | 0 | 186 | 0 | 0 | logfile |
✘ | 6oQW | 20172 | 2023-12-16 | 2019-04-29 | 3.1 | 3.49 | — | 3.3 | 0.005 | 0.82 | 5.0 | 0.05 | 14.56 | 0.00 | 1.924 | 4.66 | 1.75 | 3.3 | 96.6 | 0.1 | -2.30 | 0.77 | 0.83 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36901 | 4847 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 7EWR | 31363 | 2023-12-16 | 2021-05-26 | 4.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25779 | 2516 | 6 | 0 | 0 | 0 | 6804 | logfile |
✘ | 7FiX | 31605 | 2023-12-12 | 2021-08-01 | 1.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 73929 | 7137 | 96 | 0 | 444 | 348 | 0 | logfile |
✘ | 6DQV | 7984 | 2023-12-15 | 2018-06-11 | 3.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 140358 | 8752 | 8 | 0 | 8 | 0 | 70218 | logfile |
✘ | 3JB9 | 6413 | 2023-12-14 | 2015-08-09 | 3.6 | 3.70 | — | 3.6 | 0.010 | 1.29 | 13.0 | 0.07 | 17.72 | 0.01 | 1.253 | 18.05 | 8.06 | 9.1 | 87.9 | 3.0 | -3.97 | 0.52 | 0.51 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 86551 | 9194 | 50 | 328 | 1328 | 0 | 0 | logfile |
✘ | 8APE | 15567 | 2023-12-12 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 60 | 0 | 36 | 0 | 62392 | logfile |
✘ | 7UT6 | 26756 | 2023-12-11 | 2022-04-26 | 1.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16442 | 1998 | 12 | 0 | 8 | 415 | 0 | logfile |
✘ | 7K8V | 22732 | 2023-12-13 | 2020-09-27 | 3.8 | 4.64 | — | 4.0 | 0.003 | 0.62 | 0.0 | 0.07 | 13.79 | 0.00 | 2.005 | 11.42 | 0.15 | 4.8 | 95.1 | 0.2 | -2.90 | 0.81 | 0.74 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26248 | 3390 | 20 | 0 | 41 | 0 | 0 | logfile |
✘ | 8APG | 15570 | 2023-12-12 | 2022-08-09 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 61 | 0 | 36 | 0 | 62387 | logfile |
✘ | 8APF | 15568 | 2023-12-12 | 2022-08-09 | 4.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 60 | 0 | 36 | 0 | 62387 | logfile |
✘ | 8ENo | 28275 | 2023-12-11 | 2022-09-30 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16485 | 2047 | 9 | 0 | 9 | 0 | 0 | logfile |