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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7MDi | 23773 | 2023-12-15 | 2021-04-05 | 4.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.24 | — | — | — | 4.3 | 0.004 | 0.64 | 0.0 | 0.04 | 13.92 | 0.00 | 1.853 | 10.97 | 0.00 | 12.7 | 87.3 | 0.0 | -1.91 | — | 0.79 | 0.82 | — | 30608 | 4348 | 20 | 0 | 24 | 24 | 0 | logfile |
✘ | 6K9L | 9950 | 2023-12-15 | 2019-06-16 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -3.11 | — | — | — | 4.2 | 0.002 | 0.68 | 0.0 | 0.04 | 9.69 | 0.00 | 2.113 | 12.22 | 0.00 | 7.1 | 92.9 | 0.0 | 0.72 | — | 0.85 | 0.75 | — | 30601 | 5103 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-12-08 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.004 | 0.66 | 0.0 | 0.04 | 21.59 | 0.00 | 2.070 | 19.23 | 0.00 | 8.0 | 91.6 | 0.5 | -1.26 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 7V88 | 31793 | 2023-12-16 | 2021-08-22 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.29 | — | — | 1.72 | 3.6 | 0.006 | 0.67 | 0.0 | 0.04 | 14.88 | 0.00 | 2.082 | 11.01 | 0.16 | 6.7 | 93.3 | 0.0 | -0.23 | — | 0.86 | 0.86 | 1.51 | 35098 | 4281 | 47 | 0 | 89 | 0 | 0 | logfile |
✘ | 7UVV | 26817 | 2023-12-14 | 2022-05-02 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.74 | — | — | 3.70 | 2.6 | 0.006 | 0.69 | 0.0 | 0.04 | 21.89 | 0.01 | 2.050 | 4.72 | 3.60 | 3.1 | 96.8 | 0.1 | 0.71 | — | 0.92 | 0.93 | 3.57 | 138294 | 5500 | 56 | 4447 | 3 | 0 | 0 | logfile |
✘ | 7LUM | 23522 | 2023-12-09 | 2021-02-22 | 4.5 | 4.68 | — | 4.6 | 0.007 | 0.85 | 0.0 | 0.05 | 14.02 | 0.00 | 1.970 | 26.15 | 0.00 | 7.5 | 92.3 | 0.2 | -0.70 | 0.79 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63978 | 8374 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8GAE | 29895 | 2023-12-16 | 2023-02-22 | 3.3 | 4.66 | 3.24 | 2.4 | 0.016 | 2.11 | 27.0 | 0.12 | 14.87 | 0.02 | 1.904 | 1.55 | 0.05 | 2.0 | 98.0 | 0.0 | -1.76 | 0.92 | 0.81 | 2.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35378 | 2175 | 8 | 0 | 8 | 0 | 17630 | logfile |
✘ | 8JLQ | 36404 | 2023-12-08 | 2023-06-02 | 2.84 | 3.01 | 2.88 | 3.1 | 0.005 | 0.78 | 1.0 | 0.05 | 13.14 | 0.00 | 2.203 | 18.53 | 0.41 | 4.0 | 96.0 | 0.0 | -0.45 | 0.59 | 0.69 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9033 | 1140 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7DXC | 30904 | 2023-12-12 | 2021-01-18 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22896 | 2808 | 8 | 0 | 20 | 0 | 0 | logfile |
✘ | 7YAE | 33710 | 2023-12-08 | 2022-06-28 | 3.37 | 3.61 | 3.35 | 3.7 | 0.005 | 0.74 | 1.0 | 0.05 | 14.54 | 0.00 | 2.207 | 12.85 | 0.92 | 5.2 | 94.8 | 0.0 | -0.26 | 0.58 | 0.64 | 1.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9031 | 1146 | 7 | 0 | 4 | 0 | 0 | logfile |
✘ | 7E4T | 30987 | 2023-12-12 | 2021-02-15 | 3.0 | 3.26 | 3.08 | 3.3 | 0.007 | 0.79 | 0.0 | 0.04 | 14.09 | 0.00 | 2.278 | 6.50 | 1.01 | 1.1 | 98.9 | 0.0 | 0.77 | 0.50 | 0.68 | 3.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22276 | 2656 | 8 | 0 | 24 | 0 | 0 | logfile |
✘ | 6ZHD | 11218 | 2023-12-14 | 2020-06-22 | 3.7 | 4.31 | — | 3.8 | 0.008 | 1.46 | 10.0 | 0.10 | 12.79 | 0.01 | 1.973 | 5.27 | 0.74 | 3.6 | 96.3 | 0.0 | -0.92 | 0.89 | 0.88 | 2.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26927 | 3353 | 29 | 0 | 66 | 0 | 0 | logfile |
✘ | 7DXF | 30907 | 2023-12-12 | 2021-01-18 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22940 | 2740 | 8 | 0 | 40 | 0 | 0 | logfile |
✘ | 6PW6 | 20500 | 2023-12-11 | 2019-07-22 | 4.5 | 4.56 | 4.36 | 4.5 | 0.022 | 1.83 | 0.0 | 0.11 | 10.94 | 0.01 | 2.200 | 1.61 | 0.56 | 2.7 | 97.2 | 0.2 | 0.50 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15942 | 1842 | 45 | 0 | 108 | 0 | 0 | logfile |
✘ | 6QG0 | 4543 | 2023-12-16 | 2019-01-10 | 4.15 | 4.29 | 4.10 | 4.3 | 0.009 | 1.40 | 20.0 | 0.08 | 18.07 | 0.00 | 0.775 | 5.30 | 5.91 | 10.0 | 87.6 | 2.4 | -3.14 | 0.56 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36980 | 4742 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7D4P | 30575 | 2023-12-12 | 2020-09-24 | 2.7 | 3.03 | 2.86 | 3.0 | 0.007 | 0.80 | 0.0 | 0.04 | 13.90 | 0.00 | 2.269 | 4.62 | 0.67 | 1.2 | 98.8 | 0.0 | 2.42 | 0.58 | 0.76 | 3.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22472 | 2676 | 8 | 0 | 28 | 0 | 0 | logfile |
✘ | 6VVX | 21406 | 2023-12-15 | 2020-02-18 | 3.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29858 | 3508 | 12 | 128 | 4 | 0 | 0 | logfile |
✘ | 7KUX | 23040 | 2023-12-16 | 2020-11-25 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35803 | 3259 | 40 | 0 | 215 | 45 | 0 | logfile |
✘ | 6FLQ | 4275 | 2023-12-15 | 2018-01-26 | 3.6 | 3.93 | 3.76 | 40.0 | 0.016 | 1.33 | 0.0 | 0.07 | 15.20 | 0.01 | 1.897 | 5.97 | 1.40 | 10.8 | 89.1 | 0.1 | -4.32 | 0.16 | 0.02 | 0.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30201 | 3868 | 10 | 91 | 3 | 0 | 0 | logfile |
✘ | 6VVY | 21407 | 2023-12-15 | 2020-02-18 | 3.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30033 | 3516 | 12 | 130 | 4 | 0 | 0 | logfile |