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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8EAo | 27792 | 2023-12-12 | 2022-08-29 | 3.2 | 4.04 | 3.15 | 20.0 | 0.003 | 0.60 | 0.0 | 0.05 | 14.09 | 0.00 | 2.197 | 10.56 | 0.10 | 3.6 | 96.4 | 0.0 | 1.03 | 0.18 | 0.04 | -0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71628 | 8964 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6UMM | 20820 | 2023-12-13 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 11.97 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2023-12-12 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 22.51 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 6QoZ | 4610 | 2023-12-11 | 2019-02-13 | 3.4 | 3.65 | 3.13 | 3.5 | 0.011 | 1.46 | 4.0 | 0.09 | 15.40 | 0.01 | 1.243 | 4.20 | 5.13 | 6.0 | 93.1 | 0.9 | -3.28 | 0.40 | 0.62 | 0.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17987 | 2307 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ES4 | 28562 | 2023-12-08 | 2022-10-13 | 3.3 | 3.43 | 3.25 | 5.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.99 | 0.00 | 0.946 | 19.53 | 0.00 | 3.7 | 96.2 | 0.0 | 0.75 | 0.36 | 0.16 | 0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110772 | 14766 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 6CB8 | 7449 | 2023-12-16 | 2018-02-02 | 3.8 | 4.11 | — | 4.7 | 0.006 | 0.84 | 0.0 | 0.05 | 11.71 | 0.01 | 1.542 | 37.90 | 0.00 | 18.6 | 81.4 | 0.0 | -5.72 | 0.54 | 0.27 | 0.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100224 | 6210 | 27 | 0 | 27 | 0 | 50436 | logfile |
✘ | 6FLQ | 4275 | 2023-12-15 | 2018-01-26 | 3.6 | 3.93 | 3.76 | 40.0 | 0.016 | 1.33 | 0.0 | 0.07 | 15.20 | 0.01 | 1.897 | 5.97 | 1.40 | 10.8 | 89.1 | 0.1 | -4.32 | 0.16 | 0.02 | 0.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30201 | 3868 | 10 | 91 | 3 | 0 | 0 | logfile |
✘ | 6RBE | 4795 | 2023-12-12 | 2019-04-10 | 3.8 | 3.81 | 4.03 | 5.1 | 0.007 | 1.27 | 0.0 | 0.06 | 22.51 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.38 | 0.09 | 0.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 6SPD | 10282 | 2023-12-15 | 2019-09-01 | 3.28 | 3.35 | — | 3.3 | 0.010 | 1.16 | 0.0 | 0.06 | 23.86 | 0.01 | 0.400 | 15.51 | 1.26 | 12.2 | 87.1 | 0.7 | -5.12 | 0.66 | 0.50 | 0.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 90352 | 3458 | 32 | 2967 | 0 | 0 | 0 | logfile |
✘ | 7V9A | 31813 | 2023-12-11 | 2021-08-24 | 3.94 | 3.46 | — | 3.4 | 0.002 | 0.58 | 0.0 | 0.03 | 18.68 | 0.00 | 2.260 | 6.87 | 0.00 | 5.2 | 94.8 | 0.0 | -4.05 | 0.66 | 0.57 | 0.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16876 | 1723 | 10 | 146 | 0 | 0 | 0 | logfile |
✘ | 7K8V | 22732 | 2023-12-13 | 2020-09-27 | 3.8 | 4.64 | — | 4.0 | 0.003 | 0.62 | 0.0 | 0.07 | 13.79 | 0.00 | 2.005 | 11.42 | 0.15 | 4.8 | 95.1 | 0.2 | -2.90 | 0.81 | 0.74 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26248 | 3390 | 20 | 0 | 41 | 0 | 0 | logfile |
✘ | 8ETi | 24395 | 2023-12-15 | 2022-10-17 | 3.7 | 3.18 | — | 3.0 | 0.004 | 0.62 | 0.0 | 0.04 | 21.56 | 0.01 | 2.074 | 11.57 | 0.78 | 5.4 | 94.6 | 0.1 | -3.47 | 0.51 | 0.44 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 90456 | 7639 | 46 | 1812 | 1 | 0 | 0 | logfile |
✘ | 6TM5 | 10518 | 2023-12-09 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.83 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |
✘ | 7ZNL | 14808 | 2023-12-14 | 2022-04-21 | 3.45 | 3.67 | 3.55 | 3.4 | 0.005 | 0.78 | 0.0 | 0.04 | 11.78 | 0.01 | 2.171 | 7.60 | 6.04 | 6.6 | 93.1 | 0.3 | -2.22 | 0.37 | 0.21 | 0.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 84821 | 11173 | 28 | 0 | 0 | 0 | 0 | logfile |
✘ | 8GNB | 34159 | 2023-12-10 | 2022-08-23 | 3.9 | 5.27 | 4.76 | 5.1 | 0.004 | 0.94 | 0.0 | 0.05 | 12.92 | 0.01 | 2.231 | 14.24 | 0.00 | 5.1 | 94.9 | 0.0 | -0.65 | 0.53 | 0.62 | 0.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15770 | 2010 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 8GA8 | 29892 | 2023-12-12 | 2023-02-22 | 3.5 | 3.70 | 3.49 | 3.7 | 0.003 | 0.54 | 0.0 | 0.04 | 17.43 | 0.00 | 2.028 | 11.33 | 0.33 | 2.6 | 97.4 | 0.0 | 0.98 | 0.70 | 0.69 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22011 | 2675 | 12 | 0 | 2 | 0 | 0 | logfile |
✘ | 8DRA | 27675 | 2023-12-09 | 2022-07-20 | 3.98 | 4.17 | 3.98 | 4.0 | 0.003 | 0.77 | 0.0 | 0.05 | 15.74 | 0.01 | 2.257 | 11.58 | 0.35 | 5.4 | 94.6 | 0.0 | -3.01 | 0.63 | 0.69 | 0.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9899 | 1218 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7KML | 22926 | 2023-12-16 | 2020-11-03 | 3.8 | 4.97 | 3.83 | 3.8 | 0.018 | 1.87 | 0.0 | 0.10 | 10.87 | 0.01 | 2.415 | 0.65 | 0.39 | 1.9 | 98.1 | 0.0 | 0.45 | 0.89 | 0.76 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35136 | 4413 | 39 | 0 | 78 | 0 | 0 | logfile |
✘ | 8oR2 | 17115 | 2023-12-11 | 2023-04-12 | 3.2 | 2.36 | 3.12 | 3.0 | 0.007 | 0.76 | 13.0 | 0.06 | 14.65 | 0.00 | 1.805 | 7.23 | 1.24 | 3.3 | 96.7 | 0.0 | 1.99 | 0.72 | 0.66 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16558 | 2072 | 5 | 0 | 3 | 0 | 0 | logfile |
✘ | 8DCX | 27330 | 2023-12-09 | 2022-06-17 | 2.8 | 3.32 | 3.33 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 14.71 | 0.00 | 2.195 | 13.47 | 0.00 | 5.4 | 94.6 | 0.1 | -0.04 | 0.48 | 0.60 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9627 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |