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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7S3D | 24821 | 2023-12-13 | 2021-09-05 | 2.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75150 | 7074 | 78 | 0 | 417 | 333 | 0 | logfile |
✘ | 7BC4 | 12138 | 2023-12-14 | 2020-12-18 | 3.1 | 2.99 | 2.99 | 3.0 | 0.008 | 0.88 | 1.0 | 0.06 | 15.49 | 0.01 | 2.285 | 5.33 | 1.19 | 6.4 | 93.6 | 0.0 | -5.07 | 0.51 | 0.85 | 3.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27610 | 3514 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 6WWZ | 21950 | 2023-12-08 | 2020-05-09 | 3.34 | 3.53 | — | 3.5 | 0.014 | 1.77 | 0.0 | 0.09 | 13.13 | 0.00 | 2.318 | 2.07 | 0.10 | 4.4 | 95.6 | 0.0 | -3.33 | 0.56 | 0.77 | 2.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9450 | 1211 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Too | 26033 | 2023-12-11 | 2022-01-24 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8EGS | 28129 | 2023-12-15 | 2022-09-13 | 3.92 | 4.06 | 3.83 | 4.0 | 0.003 | 0.57 | 0.0 | 0.04 | 14.97 | 0.00 | 0.357 | 27.78 | 0.35 | 3.7 | 96.3 | 0.0 | -0.21 | 0.78 | 0.80 | 1.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30696 | 3756 | 18 | 0 | 0 | 0 | 0 | logfile |
✘ | 6DQS | 7983 | 2023-12-15 | 2018-06-11 | 4.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139314 | 8750 | 8 | 0 | 8 | 0 | 69639 | logfile |
✘ | 6DQN | 7981 | 2023-12-14 | 2018-06-11 | 3.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138876 | 8744 | 8 | 0 | 8 | 0 | 69396 | logfile |
✘ | 6DR0 | 7987 | 2023-12-15 | 2018-06-11 | 4.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139988 | 8750 | 8 | 0 | 8 | 0 | 70013 | logfile |
✘ | 6DQJ | 7978 | 2023-12-14 | 2018-06-11 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138477 | 8724 | 8 | 0 | 4 | 0 | 69265 | logfile |
✘ | 8DDS | 27340 | 2023-12-15 | 2022-06-18 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32230 | 3872 | 12 | 0 | 82 | 0 | 0 | logfile |
✘ | 8ED8 | 28032 | 2023-12-15 | 2022-09-03 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32229 | 3872 | 12 | 0 | 81 | 0 | 0 | logfile |
✘ | 8F3D | 28846 | 2023-12-08 | 2022-11-09 | 3.4 | 2.64 | 3.48 | 3.3 | 0.005 | 0.93 | 0.0 | 0.05 | 13.03 | 0.01 | 1.784 | 21.50 | 0.39 | 9.3 | 90.7 | 0.0 | -1.29 | 0.57 | 0.62 | 0.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57846 | 7464 | 18 | 0 | 6 | 0 | 0 | logfile |
✘ | 7V85 | 31790 | 2023-12-16 | 2021-08-22 | 3.3 | 4.20 | — | 3.5 | 0.005 | 0.66 | 0.0 | 0.05 | 14.31 | 0.00 | 2.111 | 12.78 | 0.03 | 6.7 | 93.2 | 0.1 | -0.87 | 0.84 | 0.79 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35101 | 4306 | 39 | 0 | 75 | 0 | 0 | logfile |
✘ | 6DRA | 7991 | 2023-12-14 | 2018-06-11 | 3.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139084 | 8764 | 8 | 0 | 12 | 0 | 69544 | logfile |
✘ | 7V88 | 31793 | 2023-12-16 | 2021-08-22 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.29 | — | — | 1.72 | 3.6 | 0.006 | 0.67 | 0.0 | 0.04 | 14.88 | 0.00 | 2.082 | 11.01 | 0.16 | 6.7 | 93.3 | 0.0 | -0.23 | — | 0.86 | 0.86 | 1.51 | 35098 | 4281 | 47 | 0 | 89 | 0 | 0 | logfile |
✘ | 6PUY | 20484 | 2023-12-09 | 2019-07-18 | 2.8 | 3.15 | 2.88 | 3.1 | 0.015 | 0.90 | 0.0 | 0.06 | 19.87 | 0.01 | 0.000 | 4.36 | 0.19 | 3.0 | 97.0 | 0.0 | -3.07 | 0.75 | 0.90 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11784 | 1232 | 28 | 72 | 10 | 404 | 0 | logfile |
✘ | 8DDV | 27343 | 2023-12-15 | 2022-06-19 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32230 | 3872 | 12 | 0 | 82 | 0 | 0 | logfile |
✘ | 6J6G | 0686 | 2023-12-13 | 2019-01-15 | 3.2 | 3.37 | — | 3.2 | 0.007 | 0.94 | 0.0 | 0.09 | 16.36 | 0.01 | 1.903 | 15.53 | 3.03 | 4.6 | 94.9 | 0.5 | -3.38 | 0.67 | 0.71 | 2.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 79042 | 8981 | 47 | 550 | 14 | 0 | 0 | logfile |
✘ | 6Co7 | 7542 | 2023-12-16 | 2018-03-12 | 3.07 | 3.22 | — | 3.3 | 0.011 | 1.39 | 0.0 | 0.06 | 14.01 | 0.01 | 2.070 | 1.58 | 0.33 | 5.6 | 94.3 | 0.1 | -2.00 | 0.42 | 0.51 | 3.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35255 | 4244 | 12 | 0 | 75 | 0 | 0 | logfile |
✘ | 7o4L | 12722 | 2023-12-16 | 2021-04-06 | 3.4 | 3.17 | 3.35 | 3.1 | 0.002 | 0.45 | 0.0 | 0.04 | 14.10 | 0.00 | 2.001 | 4.13 | 0.00 | 2.3 | 97.7 | 0.0 | 2.39 | 0.69 | 0.73 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35159 | 4330 | 25 | 20 | 15 | 0 | 0 | logfile |