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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8EFQ | 28088 | 2023-12-08 | 2022-09-08 | 3.3 | 3.58 | 3.24 | 3.6 | 0.004 | 0.81 | 0.0 | 0.05 | 8.64 | 0.01 | 2.298 | 3.12 | 0.00 | 1.4 | 98.6 | 0.0 | -1.52 | 0.60 | 0.72 | 1.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7046 | 892 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 7SAX | 24958 | 2023-12-07 | 2021-09-23 | 3.0 | 2.60 | 2.97 | 3.0 | 0.007 | 0.66 | 0.0 | 0.04 | 13.54 | 0.00 | 2.174 | 5.46 | 0.00 | 3.3 | 96.7 | 0.0 | 1.22 | 0.58 | 0.85 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5305 | 689 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oo4 | 20145 | 2023-12-11 | 2019-04-22 | 3.3 | 3.45 | 3.23 | 3.5 | 0.013 | 1.10 | 0.0 | 0.06 | 10.41 | 0.01 | 1.858 | 2.96 | 0.00 | 3.4 | 96.6 | 0.0 | -2.86 | 0.47 | 0.64 | 4.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18452 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6XLC | 22239 | 2023-12-09 | 2020-06-28 | 3.66 | 3.01 | — | 3.7 | 0.003 | 0.52 | 0.0 | 0.04 | 12.92 | 0.00 | 2.079 | 6.07 | 0.00 | 1.6 | 98.4 | 0.0 | -2.69 | 0.66 | 0.64 | 1.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9858 | 1212 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7SCJ | 25036 | 2023-12-08 | 2021-09-28 | 3.4 | 2.31 | 2.97 | 2.0 | 0.004 | 0.60 | 0.0 | 0.05 | 13.30 | 0.01 | 2.200 | 9.22 | 0.00 | 5.7 | 94.3 | 0.0 | -0.25 | 0.75 | 0.72 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9336 | 1131 | 6 | 2 | 7 | 0 | 0 | logfile |
✘ | 7EUo | 31323 | 2023-12-08 | 2021-05-18 | 2.9 | 3.61 | 2.97 | 3.5 | 0.004 | 0.65 | 0.0 | 0.05 | 13.72 | 0.00 | 2.198 | 6.82 | 0.00 | 4.3 | 95.7 | 0.0 | -0.21 | 0.63 | 0.82 | 3.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8950 | 1138 | 7 | 0 | 2 | 0 | 0 | logfile |
✘ | 6oo3 | 20143 | 2023-12-11 | 2019-04-22 | 2.9 | 3.02 | 2.79 | 3.0 | 0.014 | 1.22 | 0.0 | 0.06 | 10.95 | 0.01 | 2.495 | 2.15 | 0.00 | 3.1 | 96.9 | 0.0 | -2.84 | 0.68 | 0.85 | 4.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18236 | 2404 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6CNA | 7529 | 2023-12-12 | 2018-03-07 | 4.6 | 5.89 | — | 5.8 | 0.007 | 0.93 | 0.0 | 0.05 | 13.75 | 0.01 | 2.021 | 26.55 | 0.00 | 9.7 | 90.1 | 0.3 | -4.80 | 0.57 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21426 | 3160 | 14 | 0 | 22 | 0 | 0 | logfile |
✘ | 7RHX | 24470 | 2023-12-13 | 2021-07-19 | 3.23 | 3.49 | 3.31 | 3.4 | 0.004 | 0.79 | 0.0 | 0.05 | 20.66 | 0.01 | 2.289 | 1.05 | 0.00 | 2.0 | 98.0 | 0.0 | -0.38 | 0.75 | 0.84 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25787 | 1288 | 8 | 168 | 0 | 0 | 12159 | logfile |
✘ | 7WYB | 32890 | 2023-12-08 | 2022-02-15 | 2.97 | 2.33 | — | 2.1 | 0.005 | 0.80 | 0.0 | 0.05 | 12.35 | 0.00 | 2.176 | 5.06 | 0.00 | 7.0 | 93.0 | 0.0 | -1.33 | 0.66 | 0.61 | 1.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8757 | 1115 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WGV | 32490 | 2023-12-14 | 2021-12-29 | 3.2 | 3.63 | — | 3.6 | 0.017 | 1.29 | 0.0 | 0.05 | 14.42 | 0.00 | 2.151 | 5.03 | 0.00 | 3.2 | 96.8 | 0.0 | -0.59 | 0.79 | 0.83 | 3.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26931 | 3309 | 21 | 0 | 69 | 0 | 0 | logfile |
✘ | 7UML | 26603 | 2023-12-10 | 2022-04-07 | 3.5 | 3.77 | 3.85 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 15.49 | 0.00 | 2.114 | 7.56 | 0.00 | 2.0 | 97.4 | 0.6 | -2.75 | 0.66 | 0.69 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13227 | 812 | 7 | 13 | 0 | 0 | 6477 | logfile |
✘ | 6DT0 | 8911 | 2023-12-10 | 2018-06-14 | 3.7 | 3.89 | 3.68 | 3.8 | 0.005 | 0.72 | 0.0 | 0.04 | 8.50 | 0.01 | 2.087 | 1.74 | 0.00 | 3.1 | 96.9 | 0.0 | -1.45 | 0.69 | 0.77 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13759 | 944 | 5 | 0 | 1 | 0 | 6626 | logfile |
✘ | 7RQX | 24639 | 2023-12-15 | 2021-08-08 | 3.36 | 3.59 | — | 3.5 | 0.012 | 1.06 | 0.0 | 0.06 | 19.02 | 0.01 | 2.227 | 8.03 | 0.00 | 3.4 | 96.6 | 0.0 | -0.29 | 0.67 | 0.75 | 2.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30450 | 2016 | 8 | 0 | 26 | 0 | 14344 | logfile |
✘ | 7V69 | 31739 | 2023-12-09 | 2021-08-20 | 3.4 | 2.24 | — | 2.0 | 0.003 | 0.65 | 0.0 | 0.04 | 12.64 | 0.00 | 2.096 | 13.28 | 0.00 | 2.9 | 97.1 | 0.0 | -2.02 | 0.68 | 0.64 | 2.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8539 | 1122 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oo5 | 20146 | 2023-12-11 | 2019-04-22 | 4.2 | 4.30 | 4.10 | 4.2 | 0.012 | 1.05 | 0.0 | 0.06 | 10.64 | 0.01 | 2.246 | 3.18 | 0.00 | 4.5 | 95.5 | 0.0 | -2.74 | 0.65 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17548 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 7WGX | 32491 | 2023-12-13 | 2021-12-29 | 3.5 | 3.82 | — | 3.8 | 0.017 | 1.20 | 0.0 | 0.05 | 13.51 | 0.00 | 2.256 | 4.67 | 0.00 | 3.9 | 95.6 | 0.5 | -0.06 | 0.79 | 0.83 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25629 | 3165 | 21 | 0 | 60 | 0 | 0 | logfile |
✘ | 7Fii | 31598 | 2023-12-09 | 2021-07-31 | 4.3 | 4.37 | — | 4.1 | 0.002 | 0.36 | 0.0 | 0.04 | 8.97 | 0.00 | 2.073 | 1.66 | 0.00 | 0.9 | 99.1 | 0.0 | 3.08 | 0.64 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8765 | 1522 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VZ1 | 21481 | 2023-12-08 | 2020-02-27 | 3.2 | 3.35 | — | 3.4 | 0.014 | 1.25 | 0.0 | 0.06 | 20.46 | 0.01 | 1.864 | 10.74 | 0.00 | 12.0 | 88.0 | 0.0 | -4.38 | 0.59 | 0.86 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7112 | 822 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 6oo7 | 20148 | 2023-12-11 | 2019-04-22 | 3.8 | 4.25 | 3.77 | 4.0 | 0.013 | 1.08 | 0.0 | 0.06 | 10.20 | 0.01 | 2.273 | 4.27 | 0.00 | 3.5 | 96.5 | 0.0 | -1.41 | 0.75 | 0.78 | 2.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16860 | 2394 | 8 | 0 | 4 | 0 | 0 | logfile |