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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
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✘ | 3A5X | 1641 | 2023-12-07 | 2009-08-13 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3616 | 494 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 2XEA | 1730 | 2023-12-09 | 2010-05-12 | 4.6 | 4.10 | — | 4.2 | 0.012 | 2.12 | 0.0 | 0.12 | 20.75 | 0.02 | 1.226 | 2.63 | 3.68 | 8.6 | 90.1 | 1.3 | -3.51 | 0.39 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62671 | 7546 | 98 | 147 | 0 | 0 | 0 | logfile |
✘ | 3J5Q | 5776 | 2023-12-11 | 2013-10-28 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18556 | 2448 | 8 | 0 | 44 | 0 | 292 | logfile |
✘ | 4CE4 | 2490 | 2023-12-09 | 2013-11-08 | 4.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✘ | 3J8H | 2807 | 2023-12-08 | 2014-10-26 | 3.8 | 3.95 | — | 3.8 | 0.006 | 1.31 | 4.0 | 0.05 | 10.89 | 0.01 | 1.488 | 33.49 | 2.47 | 5.3 | 92.8 | 1.9 | -2.06 | 0.65 | 0.64 | 1.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111160 | 12796 | 12 | 0 | 2276 | 0 | 0 | logfile |
✘ | 3J9Q | 6270 | 2023-12-16 | 2015-02-17 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.24 | — | — | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99648 | 13224 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JA8 | 6338 | 2023-12-15 | 2015-05-09 | 3.8 | 3.83 | — | 3.8 | 0.014 | 1.57 | 0.0 | 0.06 | 10.98 | 0.01 | 1.749 | 29.23 | 0.37 | 7.9 | 91.0 | 1.1 | -4.26 | 0.68 | 0.80 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29838 | 3786 | 12 | 0 | 6 | 0 | 0 | logfile |
✘ | 3JAF | 6346 | 2023-12-10 | 2015-06-08 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13865 | 1710 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 5A7U | 3079 | 2023-12-07 | 2015-07-10 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 455 | 27 | 1 | 0 | 1 | 0 | 231 | logfile |
✘ | 3JB9 | 6413 | 2023-12-14 | 2015-08-09 | 3.6 | 3.70 | — | 3.6 | 0.010 | 1.29 | 13.0 | 0.07 | 17.72 | 0.01 | 1.253 | 18.05 | 8.06 | 9.1 | 87.9 | 3.0 | -3.97 | 0.52 | 0.51 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 86551 | 9194 | 50 | 328 | 1328 | 0 | 0 | logfile |
✘ | 5ADY | 3133 | 2023-12-16 | 2015-08-25 | 4.5 | 4.75 | — | 4.5 | 0.011 | 1.28 | 0.0 | 0.06 | 24.17 | 0.01 | 1.391 | 57.89 | 0.21 | 11.7 | 81.7 | 6.7 | -3.35 | 0.72 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97364 | 4197 | 35 | 3020 | 2 | 0 | 0 | logfile |
✘ | 3JC6 | 6534 | 2023-12-13 | 2015-11-24 | 3.7 | 4.01 | — | 3.9 | 0.009 | 1.54 | 0.0 | 0.06 | 12.91 | 0.01 | 1.203 | 39.73 | 0.87 | 9.8 | 89.0 | 1.1 | -3.87 | 0.79 | 0.76 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23732 | 2953 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 5GAE | 8001 | 2023-12-15 | 2015-11-25 | 3.33 | 3.45 | — | 3.3 | 0.007 | 0.94 | 0.0 | 0.04 | 22.21 | 0.00 | 1.884 | 5.65 | 5.36 | 3.0 | 96.9 | 0.1 | -2.76 | 0.79 | 0.88 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 95192 | 3886 | 41 | 3007 | 349 | 0 | 0 | logfile |
✘ | 5GAQ | 8015 | 2023-12-12 | 2016-01-05 | 3.1 | 3.36 | — | 3.2 | 0.006 | 1.02 | 0.0 | 0.08 | 11.97 | 0.00 | 2.289 | 1.94 | 0.80 | 7.3 | 92.7 | 0.0 | -3.69 | 0.56 | 0.50 | 3.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20574 | 2592 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JCU | 6617 | 2023-12-13 | 2016-03-10 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75994 | 7648 | 76 | 0 | 322 | 0 | 0 | logfile |
✘ | 5GJQ | 9511 | 2023-12-16 | 2016-07-01 | 4.35 | 4.02 | — | 3.8 | 0.016 | 1.83 | 29.0 | 0.09 | 16.70 | 0.01 | 1.073 | 47.82 | 10.02 | 11.3 | 84.5 | 4.2 | -4.17 | 0.79 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98461 | 13520 | 54 | 0 | 6 | 0 | 0 | logfile |
✘ | 5GJR | 9512 | 2023-12-16 | 2016-07-01 | 3.5 | 3.65 | — | 3.5 | 0.013 | 1.53 | 38.0 | 0.08 | 16.77 | 0.01 | 1.114 | 63.72 | 11.56 | 13.2 | 81.8 | 5.0 | -4.66 | 0.71 | 0.77 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 142753 | 19945 | 76 | 0 | 12 | 0 | 0 | logfile |
✘ | 5GJV | 9513 | 2023-12-12 | 2016-07-02 | 3.6 | 3.69 | — | 3.7 | 0.013 | 1.62 | 32.0 | 0.08 | 15.16 | 0.01 | 1.695 | 18.01 | 4.57 | 11.6 | 86.4 | 2.0 | -5.08 | 0.54 | 0.79 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21904 | 2661 | 14 | 0 | 43 | 0 | 0 | logfile |
✘ | 5GJW | 9515 | 2023-12-12 | 2016-07-02 | 3.9 | 4.02 | — | 4.0 | 0.012 | 1.51 | 20.0 | 0.08 | 11.80 | 0.01 | 1.844 | 12.82 | 1.50 | 12.8 | 85.5 | 1.7 | -5.28 | 0.55 | 0.80 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21561 | 2676 | 14 | 0 | 29 | 0 | 0 | logfile |
✘ | 5GKY | 9518 | 2023-12-08 | 2016-07-07 | 3.8 | 4.18 | — | 4.0 | 0.017 | 1.70 | 19.0 | 0.10 | 11.29 | 0.01 | 1.789 | 19.04 | 0.51 | 5.8 | 91.8 | 2.5 | -2.71 | 0.73 | 0.79 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111036 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |