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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8J5A | 35984 | 2023-12-15 | 2023-04-21 | 1.19 | 1.12 | 1.22 | 1.2 | 0.014 | 1.48 | 0.0 | 0.08 | 13.93 | 0.01 | 1.560 | 8.49 | 3.21 | 0.6 | 99.4 | 0.0 | 3.37 | 0.51 | 0.66 | 8.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56208 | 4128 | 24 | 0 | 24 | 3384 | 17040 | logfile |
✘ | 7UUZ | 26807 | 2023-12-07 | 2022-04-29 | 3.2 | 3.25 | 1.51 | 3.2 | 0.006 | 0.57 | 0.0 | 0.04 | 13.54 | 0.00 | 2.186 | 5.97 | 0.51 | 5.9 | 94.1 | 0.0 | 1.14 | 0.62 | 0.78 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3786 | 501 | 1 | 0 | 3 | 0 | 0 | logfile |
✘ | 7A5V | 11657 | 2023-12-12 | 2020-08-22 | 1.7 | 1.73 | 1.69 | 1.8 | 0.014 | 1.60 | 0.0 | 0.09 | 13.43 | 0.02 | 0.000 | 2.35 | 0.48 | 2.2 | 97.8 | 0.0 | -0.05 | 0.61 | 0.79 | 6.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21155 | 2275 | 30 | 0 | 85 | 1015 | 0 | logfile |
✘ | 8CGU | 16651 | 2023-12-16 | 2023-02-06 | 1.89 | 1.60 | 1.82 | 1.8 | 0.009 | 1.59 | 1.0 | 0.11 | 21.29 | 0.02 | 1.895 | 0.38 | 0.38 | 2.4 | 97.6 | 0.0 | -0.61 | 0.60 | 0.81 | 6.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35196 | 1266 | 31 | 1078 | 87 | 1871 | 0 | logfile |
✘ | 7EFD | 31084 | 2023-12-07 | 2021-03-21 | 1.77 | 1.78 | 1.82 | 1.9 | 0.033 | 3.16 | 12.0 | 0.09 | 15.32 | 0.02 | 0.001 | 1.61 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.74 | 0.82 | 5.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✘ | 8BQV | 16188 | 2023-12-08 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✘ | 8D8R | 27255 | 2023-12-07 | 2022-06-08 | 4.1 | 4.18 | 1.95 | 4.1 | 0.011 | 1.25 | 0.0 | 0.06 | 10.92 | 0.01 | 2.512 | 1.08 | 0.00 | 2.1 | 97.9 | 0.0 | 1.96 | 0.59 | 0.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3323 | 425 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 6SAG | 10130 | 2023-12-07 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 13.90 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✘ | 7Z18 | 14444 | 2023-12-17 | 2022-02-24 | 1.98 | 2.40 | 2.04 | 2.3 | 0.008 | 0.94 | 0.0 | 0.06 | 15.45 | 0.01 | 1.726 | 3.36 | 1.19 | 1.9 | 98.1 | 0.0 | 1.45 | 0.79 | 0.82 | 5.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37659 | 2432 | 18 | 0 | 10 | 2 | 18660 | logfile |
✘ | 8BJM | 16089 | 2023-12-11 | 2022-11-04 | 2.2 | 2.55 | 2.08 | 2.4 | 0.005 | 0.55 | 0.0 | 0.04 | 13.85 | 0.00 | 2.200 | 4.88 | 1.17 | 0.5 | 99.5 | 0.0 | 2.08 | 0.83 | 0.88 | 5.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16655 | 2050 | 22 | 0 | 0 | 498 | 0 | logfile |
✘ | 8BKB | 16095 | 2023-12-16 | 2022-11-08 | 2.2 | 1.97 | 2.09 | 2.0 | 0.003 | 0.61 | 0.0 | 0.04 | 17.88 | 0.00 | 2.225 | 1.59 | 1.40 | 1.4 | 98.6 | 0.0 | 4.82 | 0.71 | 0.86 | 6.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35139 | 4128 | 54 | 0 | 6 | 1317 | 0 | logfile |
✘ | 6XZ7 | 10655 | 2023-12-15 | 2020-02-03 | 2.1 | 2.05 | 2.12 | 2.1 | 0.010 | 0.84 | 1.0 | 0.05 | 22.59 | 0.04 | 1.564 | 6.31 | 3.26 | 2.8 | 96.8 | 0.4 | -2.20 | 0.41 | 0.69 | 5.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94915 | 3351 | 45 | 3169 | 179 | 528 | 0 | logfile |
✘ | 8PN7 | 17777 | 2023-12-16 | 2023-06-30 | 2.03 | 2.46 | 2.13 | 2.4 | 0.044 | 1.46 | 0.0 | 0.04 | 13.01 | 0.00 | 1.664 | 8.62 | 0.35 | 1.5 | 98.5 | 0.0 | 1.20 | 0.72 | 0.85 | 5.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34872 | 4308 | 36 | 0 | 12 | 1476 | 0 | logfile |
✘ | 8BQW | 16189 | 2023-12-11 | 2023-01-18 | 2.3 | 2.12 | 2.14 | 2.2 | 0.008 | 1.14 | 0.0 | 0.07 | 8.96 | 0.00 | 0.052 | 12.77 | 0.00 | 9.6 | 90.4 | 0.0 | -3.78 | 0.46 | 0.75 | 7.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17385 | 2310 | 90 | 0 | 270 | 135 | 0 | logfile |
✘ | 7o6E | 12738 | 2023-12-16 | 2021-04-10 | 2.1 | 1.78 | 2.15 | 1.6 | 0.017 | 1.10 | 0.0 | 0.07 | 18.13 | 0.01 | 2.110 | 3.49 | 0.00 | 2.3 | 97.7 | 0.0 | 2.10 | 0.87 | 0.88 | 6.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35304 | 4248 | 48 | 0 | 0 | 1392 | 0 | logfile |
✘ | 8BC4 | 15962 | 2023-12-11 | 2022-10-14 | 2.7 | 2.11 | 2.15 | 2.5 | 0.015 | 2.14 | 1.0 | 0.11 | 19.24 | 0.02 | 2.310 | 4.45 | 10.79 | 4.1 | 95.8 | 0.0 | -4.88 | 0.59 | 0.76 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16440 | 2167 | 29 | 0 | 9 | 270 | 0 | logfile |
✘ | 8G6X | 29787 | 2023-12-15 | 2023-02-16 | 2.31 | 1.96 | 2.20 | 2.0 | 0.011 | 0.99 | 0.0 | 0.06 | 22.70 | 0.03 | 1.474 | 7.58 | 5.85 | 4.1 | 95.8 | 0.2 | -2.02 | 0.68 | 0.83 | 5.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93873 | 3177 | 72 | 3037 | 252 | 3462 | 0 | logfile |
✘ | 7oF0 | 12865 | 2023-12-16 | 2021-05-04 | 2.2 | 3.01 | 2.23 | 2.8 | 0.005 | 0.59 | 0.0 | 0.04 | 18.47 | 0.00 | 1.851 | 7.32 | 0.08 | 2.7 | 97.3 | 0.0 | 1.19 | 0.86 | 0.87 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99476 | 8446 | 62 | 1432 | 64 | 0 | 0 | logfile |
✘ | 7Q3L | 13793 | 2023-12-12 | 2021-10-28 | 2.21 | 2.93 | 2.31 | 2.6 | 0.008 | 1.50 | 26.0 | 0.12 | 15.65 | 0.01 | 1.876 | 2.99 | 2.50 | 3.2 | 96.8 | 0.0 | -1.25 | 0.81 | 0.86 | 3.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20470 | 2440 | 16 | 41 | 4 | 180 | 0 | logfile |
✘ | 8H6H | 34504 | 2023-12-15 | 2022-10-17 | 2.3 | 3.01 | 2.32 | 2.7 | 0.003 | 0.47 | 0.0 | 0.04 | 16.99 | 0.00 | 2.112 | 1.88 | 0.94 | 3.1 | 96.9 | 0.0 | 1.06 | 0.84 | 0.91 | 5.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31017 | 1971 | 4 | 0 | 4 | 0 | 15181 | logfile |