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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7KEJ | 22839 | 2023-12-10 | 2020-10-11 | 3.8 | 3.55 | — | 3.6 | 0.021 | 1.73 | 0.0 | 0.11 | 9.85 | 0.01 | 1.201 | 0.59 | 0.00 | 0.4 | 99.6 | 0.0 | 1.20 | 0.82 | 0.84 | 4.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13806 | 1740 | 18 | 0 | 24 | 0 | 0 | logfile |
✘ | 8BJM | 16089 | 2023-12-11 | 2022-11-04 | 2.2 | 2.55 | 2.08 | 2.4 | 0.005 | 0.55 | 0.0 | 0.04 | 13.85 | 0.00 | 2.200 | 4.88 | 1.17 | 0.5 | 99.5 | 0.0 | 2.08 | 0.83 | 0.88 | 5.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16655 | 2050 | 22 | 0 | 0 | 498 | 0 | logfile |
✘ | 6SHT | 10205 | 2023-12-16 | 2019-08-08 | 2.73 | 2.88 | 2.75 | 2.8 | 0.015 | 1.55 | 0.0 | 0.07 | 19.28 | 0.01 | 0.000 | 7.75 | 5.56 | 0.6 | 98.8 | 0.6 | -2.82 | 0.81 | 0.91 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37152 | 4176 | 24 | 0 | 48 | 1728 | 0 | logfile |
✘ | 8J5A | 35984 | 2023-12-15 | 2023-04-21 | 1.19 | 1.12 | 1.22 | 1.2 | 0.014 | 1.48 | 0.0 | 0.08 | 13.93 | 0.01 | 1.560 | 8.49 | 3.21 | 0.6 | 99.4 | 0.0 | 3.37 | 0.51 | 0.66 | 8.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56208 | 4128 | 24 | 0 | 24 | 3384 | 17040 | logfile |
✘ | 6PP6 | 20420 | 2023-12-15 | 2019-07-05 | 4.28 | 4.54 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.04 | 12.43 | 0.00 | 2.179 | 3.17 | 0.00 | 0.6 | 99.4 | 0.0 | -1.13 | 0.79 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32106 | 2062 | 13 | 0 | 12 | 0 | 16126 | logfile |
✘ | 6VL6 | 21231 | 2023-12-12 | 2020-01-22 | 4.6 | 5.00 | 4.54 | 4.6 | 0.019 | 1.46 | 0.0 | 0.09 | 11.38 | 0.01 | 2.431 | 0.59 | 0.00 | 0.9 | 99.1 | 0.0 | 0.45 | 0.87 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21504 | 2640 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VWK | 21419 | 2023-12-08 | 2020-02-20 | 3.3 | 3.56 | — | 3.5 | 0.010 | 1.30 | 4.0 | 0.07 | 12.71 | 0.01 | 2.355 | 0.98 | 0.59 | 0.9 | 99.1 | 0.0 | -0.35 | 0.65 | 0.83 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8423 | 1133 | 13 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Fii | 31598 | 2023-12-09 | 2021-07-31 | 4.3 | 4.37 | — | 4.1 | 0.002 | 0.36 | 0.0 | 0.04 | 8.97 | 0.00 | 2.073 | 1.66 | 0.00 | 0.9 | 99.1 | 0.0 | 3.08 | 0.64 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8765 | 1522 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VX4 | 32168 | 2023-12-08 | 2021-11-12 | 3.9 | 4.09 | — | 4.2 | 0.003 | 0.63 | 0.0 | 0.04 | 8.88 | 0.00 | 2.082 | 7.58 | 0.14 | 0.9 | 99.0 | 0.1 | -2.27 | 0.58 | 0.69 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6493 | 791 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 6KNG | 0731 | 2023-12-08 | 2019-08-05 | 2.85 | 3.15 | — | 3.1 | 0.005 | 0.65 | 0.0 | 0.05 | 14.34 | 0.00 | 2.093 | 4.97 | 3.68 | 0.9 | 99.1 | 0.0 | -2.31 | 0.83 | 0.91 | 4.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7749 | 1002 | 6 | 0 | 6 | 0 | 0 | logfile |
✘ | 7SiP | 25147 | 2023-12-08 | 2021-10-14 | 3.0 | 3.27 | — | 3.3 | 0.011 | 1.17 | 0.0 | 0.04 | 17.47 | 0.01 | 2.313 | 3.17 | 0.00 | 0.9 | 99.1 | 0.0 | 0.93 | 0.63 | 0.81 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7560 | 892 | 12 | 0 | 36 | 20 | 0 | logfile |
✘ | 6XL9 | 22236 | 2023-12-16 | 2020-06-28 | 2.5 | 3.20 | — | 3.1 | 0.008 | 0.90 | 0.0 | 0.06 | 17.12 | 0.01 | 2.025 | 5.93 | 0.00 | 1.0 | 98.9 | 0.0 | -3.38 | 0.71 | 0.81 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35113 | 4137 | 18 | 110 | 8 | 21 | 0 | logfile |
✘ | 7ZNJ | 14803 | 2023-12-16 | 2022-04-21 | 2.4 | 2.51 | 2.47 | 2.5 | 0.004 | 0.82 | 0.0 | 0.05 | 17.52 | 0.01 | 2.092 | 3.02 | 0.83 | 1.1 | 98.9 | 0.0 | -1.45 | 0.70 | 0.77 | 3.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35088 | 4242 | 36 | 36 | 12 | 0 | 0 | logfile |
✘ | 7E4T | 30987 | 2023-12-12 | 2021-02-15 | 3.0 | 3.26 | 3.08 | 3.3 | 0.007 | 0.79 | 0.0 | 0.04 | 14.09 | 0.00 | 2.278 | 6.50 | 1.01 | 1.1 | 98.9 | 0.0 | 0.77 | 0.50 | 0.68 | 3.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22276 | 2656 | 8 | 0 | 24 | 0 | 0 | logfile |
✘ | 8A1W | 15091 | 2023-12-15 | 2022-06-02 | 2.56 | 2.20 | 2.53 | 2.4 | 0.004 | 0.56 | 0.0 | 0.04 | 16.54 | 0.00 | 2.014 | 2.96 | 0.32 | 1.1 | 98.9 | 0.0 | 1.65 | 0.60 | 0.72 | 3.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30172 | 1908 | 16 | 0 | 16 | 289 | 14776 | logfile |
✘ | 6ZH5 | 11214 | 2023-12-16 | 2020-06-21 | 2.7 | 3.69 | — | 3.3 | 0.007 | 0.73 | 0.0 | 0.04 | 18.44 | 0.00 | 2.015 | 8.51 | 12.67 | 1.1 | 98.9 | 0.0 | -2.77 | 0.85 | 0.86 | 1.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34408 | 4272 | 35 | 0 | 16 | 0 | 0 | logfile |
✘ | 8FCN | 28987 | 2023-12-16 | 2022-12-01 | 2.95 | 3.93 | 4.11 | 3.5 | 0.010 | 0.82 | 0.0 | 0.06 | 12.73 | 0.00 | 2.403 | 0.65 | 0.11 | 1.2 | 98.7 | 0.1 | 0.17 | 0.76 | 0.64 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35034 | 4446 | 18 | 0 | 12 | 0 | 0 | logfile |
✘ | 7A6B | 11669 | 2023-12-14 | 2020-08-25 | 1.33 | 1.21 | — | 1.3 | 0.015 | 1.60 | 24.0 | 0.12 | 16.78 | 0.01 | 1.893 | 4.97 | 4.17 | 1.2 | 98.8 | 0.0 | 2.52 | 0.52 | 0.65 | 9.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41494 | 4152 | 72 | 0 | 32 | 3854 | 0 | logfile |
✘ | 7D4P | 30575 | 2023-12-12 | 2020-09-24 | 2.7 | 3.03 | 2.86 | 3.0 | 0.007 | 0.80 | 0.0 | 0.04 | 13.90 | 0.00 | 2.269 | 4.62 | 0.67 | 1.2 | 98.8 | 0.0 | 2.42 | 0.58 | 0.76 | 3.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22472 | 2676 | 8 | 0 | 28 | 0 | 0 | logfile |
✘ | 6VL5 | 21230 | 2023-12-10 | 2020-01-22 | 4.5 | 4.57 | 4.20 | 4.4 | 0.019 | 1.72 | 0.0 | 0.10 | 10.43 | 0.01 | 2.242 | 0.64 | 0.20 | 1.2 | 98.8 | 0.0 | 0.88 | 0.79 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15039 | 1719 | 42 | 0 | 105 | 0 | 0 | logfile |