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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6K9L | 9950 | 2023-12-15 | 2019-06-16 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -3.11 | — | — | — | 4.2 | 0.002 | 0.68 | 0.0 | 0.04 | 9.69 | 0.00 | 2.113 | 12.22 | 0.00 | 7.1 | 92.9 | 0.0 | 0.72 | — | 0.85 | 0.75 | — | 30601 | 5103 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7MDi | 23773 | 2023-12-15 | 2021-04-05 | 4.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.24 | — | — | — | 4.3 | 0.004 | 0.64 | 0.0 | 0.04 | 13.92 | 0.00 | 1.853 | 10.97 | 0.00 | 12.7 | 87.3 | 0.0 | -1.91 | — | 0.79 | 0.82 | — | 30608 | 4348 | 20 | 0 | 24 | 24 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-12-08 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.004 | 0.66 | 0.0 | 0.04 | 21.59 | 0.00 | 2.070 | 19.23 | 0.00 | 8.0 | 91.6 | 0.5 | -1.26 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 7V88 | 31793 | 2023-12-16 | 2021-08-22 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.29 | — | — | 1.72 | 3.6 | 0.006 | 0.67 | 0.0 | 0.04 | 14.88 | 0.00 | 2.082 | 11.01 | 0.16 | 6.7 | 93.3 | 0.0 | -0.23 | — | 0.86 | 0.86 | 1.51 | 35098 | 4281 | 47 | 0 | 89 | 0 | 0 | logfile |
✘ | 7UVV | 26817 | 2023-12-14 | 2022-05-02 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.74 | — | — | 3.70 | 2.6 | 0.006 | 0.69 | 0.0 | 0.04 | 21.89 | 0.01 | 2.050 | 4.72 | 3.60 | 3.1 | 96.8 | 0.1 | 0.71 | — | 0.92 | 0.93 | 3.57 | 138294 | 5500 | 56 | 4447 | 3 | 0 | 0 | logfile |
✘ | 7KML | 22926 | 2023-12-16 | 2020-11-03 | 3.8 | 4.97 | 3.83 | 3.8 | 0.018 | 1.87 | 0.0 | 0.10 | 10.87 | 0.01 | 2.415 | 0.65 | 0.39 | 1.9 | 98.1 | 0.0 | 0.45 | 0.89 | 0.76 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35136 | 4413 | 39 | 0 | 78 | 0 | 0 | logfile |
✘ | 8DJM | 27461 | 2023-12-08 | 2022-07-01 | 3.23 | 3.66 | 3.31 | 3.6 | 0.029 | 1.53 | 2.0 | 1.04 | 32.65 | 0.00 | 1.844 | 8.23 | 0.82 | 3.7 | 96.3 | 0.0 | -2.26 | 0.49 | 0.75 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7032 | 862 | 7 | 0 | 8 | 0 | 0 | logfile |
✘ | 7NYR | 12653 | 2023-12-16 | 2021-03-23 | 3.3 | 3.49 | 3.68 | 3.5 | 0.005 | 0.87 | 0.0 | 0.05 | 14.05 | 0.01 | 2.160 | 3.84 | 0.82 | 3.4 | 96.6 | 0.0 | -1.75 | 0.62 | 0.69 | 1.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35228 | 4618 | 18 | 0 | 11 | 0 | 0 | logfile |
✘ | 8FHD | 29082 | 2023-12-09 | 2022-12-14 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12686 | 1467 | 6 | 0 | 35 | 0 | 0 | logfile |
✘ | 7BH1 | 12185 | 2023-12-12 | 2021-01-09 | 3.38 | 3.94 | 3.49 | 3.8 | 0.014 | 1.15 | 0.0 | 0.06 | 14.32 | 0.01 | 2.178 | 11.08 | 0.35 | 8.4 | 91.6 | 0.0 | -3.52 | 0.68 | 0.81 | 2.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21961 | 1444 | 8 | 0 | 2 | 6 | 11139 | logfile |
✘ | 7Z37 | 14472 | 2023-12-10 | 2022-03-01 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7SY7 | 25519 | 2023-12-14 | 2021-11-24 | 2.81 | 3.86 | — | 3.0 | 0.005 | 0.82 | 0.0 | 0.06 | 12.96 | 0.01 | 2.281 | 3.29 | 0.00 | 2.0 | 98.0 | 0.0 | -0.05 | 0.86 | 0.83 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28581 | 3517 | 26 | 0 | 64 | 0 | 0 | logfile |
✘ | 7LB5 | 23263 | 2023-12-13 | 2021-01-07 | 3.16 | 4.00 | — | 3.7 | 0.003 | 0.52 | 0.0 | 0.04 | 14.28 | 0.00 | 2.323 | 7.12 | 0.93 | 1.9 | 98.1 | 0.0 | -1.95 | 0.87 | 0.84 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23616 | 3120 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6YP7 | 10865 | 2023-12-12 | 2020-04-15 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71784 | 7002 | 77 | 0 | 325 | 0 | 0 | logfile |
✘ | 8DJK | 27460 | 2023-12-08 | 2022-06-30 | 3.33 | 3.77 | 3.32 | 3.7 | 0.029 | 1.52 | 1.0 | 1.03 | 32.03 | 0.01 | 1.327 | 7.25 | 0.82 | 5.0 | 95.0 | 0.0 | -1.84 | 0.48 | 0.73 | 2.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7091 | 870 | 7 | 0 | 8 | 0 | 0 | logfile |
✘ | 8F6C | 28879 | 2023-12-11 | 2022-11-16 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19344 | 2396 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 7SY3 | 25515 | 2023-12-14 | 2021-11-24 | 2.95 | 3.95 | — | 3.2 | 0.005 | 0.82 | 0.0 | 0.06 | 13.04 | 0.01 | 2.278 | 2.67 | 0.00 | 1.9 | 98.1 | 0.0 | -0.06 | 0.84 | 0.82 | 2.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27001 | 3321 | 26 | 0 | 62 | 0 | 0 | logfile |
✘ | 7TEW | 25853 | 2023-12-08 | 2022-01-06 | 3.52 | 4.17 | — | 3.8 | 0.005 | 0.85 | 0.0 | 0.06 | 13.34 | 0.01 | 2.344 | 2.89 | 0.14 | 1.4 | 98.6 | 0.0 | 0.00 | 0.82 | 0.82 | 2.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6555 | 797 | 4 | 0 | 7 | 0 | 0 | logfile |
✘ | 7oF0 | 12865 | 2023-12-16 | 2021-05-04 | 2.2 | 3.01 | 2.23 | 2.8 | 0.005 | 0.59 | 0.0 | 0.04 | 18.47 | 0.00 | 1.851 | 7.32 | 0.08 | 2.7 | 97.3 | 0.0 | 1.19 | 0.86 | 0.87 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99476 | 8446 | 62 | 1432 | 64 | 0 | 0 | logfile |
✘ | 8F68 | 28877 | 2023-12-09 | 2022-11-16 | 3.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9666 | 1198 | 6 | 0 | 6 | 0 | 0 | logfile |