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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6UXB | 20932 | 2023-12-09 | 2019-11-07 | 4.9 | 5.50 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.627 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.74 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6UXA | 20931 | 2023-12-09 | 2019-11-07 | 4.5 | 5.05 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.628 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.71 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7TLB | 25986 | 2023-12-12 | 2022-01-18 | 3.06 | 3.26 | — | 3.2 | 0.012 | 1.74 | 1.0 | 0.09 | 13.14 | 0.01 | 2.531 | 0.11 | 0.82 | 5.3 | 94.7 | 0.1 | -1.00 | 0.54 | 0.56 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22806 | 2916 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8iRV | 35687 | 2023-12-10 | 2023-03-19 | 3.1 | 3.24 | 2.89 | 3.2 | 0.013 | 1.78 | 4.0 | 0.10 | 11.58 | 0.02 | 2.533 | 0.26 | 0.00 | 2.6 | 97.4 | 0.0 | 0.29 | 0.68 | 0.79 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14729 | 912 | 4 | 0 | 12 | 0 | 7182 | logfile |
✘ | 8CGU | 16651 | 2023-12-16 | 2023-02-06 | 1.89 | 1.60 | 1.82 | 1.8 | 0.009 | 1.59 | 1.0 | 0.11 | 21.29 | 0.02 | 1.895 | 0.38 | 0.38 | 2.4 | 97.6 | 0.0 | -0.61 | 0.60 | 0.81 | 6.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35196 | 1266 | 31 | 1078 | 87 | 1871 | 0 | logfile |
✘ | 6oLL | 20116 | 2023-12-12 | 2019-04-16 | 4.1 | 4.59 | — | 4.4 | 0.004 | 1.05 | 0.0 | 0.06 | 6.94 | 0.01 | 2.400 | 0.40 | 0.00 | 2.0 | 97.8 | 0.2 | -0.51 | 0.67 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10426 | 2114 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6BNP | 7116 | 2023-12-08 | 2017-11-17 | 4.6 | 4.61 | 3.78 | 4.4 | 0.015 | 2.10 | 24.0 | 0.11 | 16.18 | 0.02 | 1.814 | 0.55 | 1.80 | 8.3 | 90.3 | 1.3 | -3.94 | 0.48 | 0.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56792 | 7160 | 22 | 0 | 16 | 0 | 0 | logfile |
✘ | 7KEJ | 22839 | 2023-12-10 | 2020-10-11 | 3.8 | 3.55 | — | 3.6 | 0.021 | 1.73 | 0.0 | 0.11 | 9.85 | 0.01 | 1.201 | 0.59 | 0.00 | 0.4 | 99.6 | 0.0 | 1.20 | 0.82 | 0.84 | 4.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13806 | 1740 | 18 | 0 | 24 | 0 | 0 | logfile |
✘ | 6VL6 | 21231 | 2023-12-12 | 2020-01-22 | 4.6 | 5.00 | 4.54 | 4.6 | 0.019 | 1.46 | 0.0 | 0.09 | 11.38 | 0.01 | 2.431 | 0.59 | 0.00 | 0.9 | 99.1 | 0.0 | 0.45 | 0.87 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21504 | 2640 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 7LG6 | 23312 | 2023-12-13 | 2021-01-19 | 3.28 | 3.65 | 3.42 | 3.6 | 0.023 | 1.79 | 0.0 | 0.14 | 9.74 | 0.01 | 2.421 | 0.61 | 0.33 | 3.6 | 95.7 | 0.7 | 0.39 | 0.76 | 0.84 | 3.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26550 | 3153 | 66 | 0 | 135 | 0 | 0 | logfile |
✘ | 7S6L | 24879 | 2023-12-13 | 2021-09-14 | 4.0 | 4.77 | 4.03 | 4.2 | 0.020 | 1.74 | 0.0 | 0.11 | 9.97 | 0.01 | 2.336 | 0.63 | 0.04 | 2.2 | 97.8 | 0.0 | 0.74 | 0.84 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24755 | 3117 | 15 | 0 | 30 | 0 | 0 | logfile |
✘ | 6VL5 | 21230 | 2023-12-10 | 2020-01-22 | 4.5 | 4.57 | 4.20 | 4.4 | 0.019 | 1.72 | 0.0 | 0.10 | 10.43 | 0.01 | 2.242 | 0.64 | 0.20 | 1.2 | 98.8 | 0.0 | 0.88 | 0.79 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15039 | 1719 | 42 | 0 | 105 | 0 | 0 | logfile |
✘ | 8FCN | 28987 | 2023-12-16 | 2022-12-01 | 2.95 | 3.93 | 4.11 | 3.5 | 0.010 | 0.82 | 0.0 | 0.06 | 12.73 | 0.00 | 2.403 | 0.65 | 0.11 | 1.2 | 98.7 | 0.1 | 0.17 | 0.76 | 0.64 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35034 | 4446 | 18 | 0 | 12 | 0 | 0 | logfile |
✘ | 7KML | 22926 | 2023-12-16 | 2020-11-03 | 3.8 | 4.97 | 3.83 | 3.8 | 0.018 | 1.87 | 0.0 | 0.10 | 10.87 | 0.01 | 2.415 | 0.65 | 0.39 | 1.9 | 98.1 | 0.0 | 0.45 | 0.89 | 0.76 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35136 | 4413 | 39 | 0 | 78 | 0 | 0 | logfile |
✘ | 8FCL | 28982 | 2023-12-16 | 2022-12-01 | 3.51 | 3.89 | 3.72 | 3.9 | 0.011 | 0.87 | 0.0 | 0.06 | 12.28 | 0.00 | 2.300 | 0.67 | 0.10 | 1.8 | 98.2 | 0.0 | 0.35 | 0.67 | 0.63 | 1.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36904 | 4667 | 13 | 0 | 12 | 0 | 0 | logfile |
✘ | 7S6J | 24877 | 2023-12-15 | 2021-09-14 | 3.4 | 3.70 | 3.47 | 3.6 | 0.020 | 1.80 | 0.0 | 0.11 | 9.98 | 0.01 | 2.401 | 0.72 | 0.18 | 4.0 | 96.0 | 0.0 | 0.16 | 0.80 | 0.82 | 2.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30795 | 3894 | 21 | 0 | 33 | 0 | 0 | logfile |
✘ | 7KEW | 22841 | 2023-12-10 | 2020-10-13 | 4.16 | 4.63 | — | 4.4 | 0.022 | 1.88 | 3.0 | 0.12 | 9.58 | 0.01 | 2.402 | 0.73 | 0.00 | 3.2 | 96.5 | 0.4 | 0.12 | 0.59 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13173 | 1650 | 21 | 0 | 24 | 0 | 0 | logfile |
✘ | 7K43 | 22659 | 2023-12-15 | 2020-09-14 | 2.6 | 2.81 | 2.75 | 2.8 | 0.018 | 1.50 | 12.0 | 0.11 | 10.48 | 0.01 | 2.456 | 0.84 | 0.09 | 2.1 | 97.9 | 0.1 | 0.34 | 0.74 | 0.78 | 4.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30390 | 3783 | 33 | 0 | 78 | 0 | 0 | logfile |
✘ | 6NB7 | 0404 | 2023-12-13 | 2018-12-06 | 4.5 | 4.89 | — | 4.6 | 0.016 | 1.50 | 1.0 | 0.10 | 9.50 | 0.01 | 2.330 | 0.87 | 0.97 | 3.2 | 96.6 | 0.2 | 0.24 | 0.80 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24718 | 3828 | 49 | 0 | 137 | 0 | 0 | logfile |
✘ | 7S6K | 24878 | 2023-12-15 | 2021-09-14 | 3.4 | 3.64 | 3.40 | 3.6 | 0.020 | 1.79 | 0.0 | 0.11 | 9.77 | 0.01 | 2.392 | 0.89 | 0.00 | 3.4 | 96.6 | 0.0 | 0.43 | 0.80 | 0.82 | 3.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30903 | 3885 | 24 | 0 | 45 | 0 | 0 | logfile |