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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5X1G | 6701 | 2023-12-07 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 5A7U | 3079 | 2023-12-07 | 2015-07-10 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 455 | 27 | 1 | 0 | 1 | 0 | 231 | logfile |
✘ | 7USB | 26731 | 2023-12-07 | 2022-04-23 | 3.1 | 3.28 | 3.18 | 3.3 | 0.013 | 1.72 | 0.0 | 0.11 | 10.32 | 0.01 | 2.590 | 1.61 | 1.39 | 5.5 | 94.5 | 0.0 | -0.28 | 0.59 | 0.76 | 5.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1661 | 213 | 3 | 0 | 5 | 0 | 0 | logfile |
✘ | 8SL0 | 40570 | 2023-12-07 | 2023-04-20 | 3.3 | 4.17 | 3.09 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 16.00 | 0.00 | 2.201 | 7.96 | 0.00 | 8.4 | 91.2 | 0.4 | -1.67 | 0.42 | 0.83 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1737 | 228 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZSD | 14930 | 2023-12-07 | 2022-05-06 | 3.29 | 3.62 | 3.56 | 3.6 | 0.003 | 0.60 | 0.0 | 0.05 | 17.98 | 0.00 | 2.226 | 9.82 | 0.00 | 7.0 | 93.0 | 0.0 | -0.09 | 0.38 | 0.74 | 2.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2120 | 261 | 3 | 0 | 2 | 0 | 0 | logfile |
✘ | 8JPF | 36478 | 2023-12-07 | 2023-06-11 | 3.02 | 3.21 | 3.41 | 3.3 | 0.006 | 1.76 | 0.0 | 0.27 | 15.61 | 0.00 | 2.214 | 5.45 | 0.46 | 2.7 | 97.3 | 0.0 | 2.25 | 0.48 | 0.75 | 2.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2269 | 304 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 7UL4 | 26591 | 2023-12-07 | 2022-04-03 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2524 | 351 | 3 | 0 | 1 | 4 | 0 | logfile |
✘ | 8JSW | 36628 | 2023-12-07 | 2023-06-20 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2859 | 384 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 8JT9 | 36637 | 2023-12-07 | 2023-06-21 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2872 | 384 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 8T6B | 41068 | 2023-12-07 | 2023-06-15 | 3.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2916 | 387 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 8JTC | 36640 | 2023-12-07 | 2023-06-21 | 3.52 | 3.71 | 3.55 | 3.7 | 0.007 | 1.06 | 0.0 | 0.05 | 14.57 | 0.01 | 2.240 | 7.41 | 0.33 | 3.4 | 96.6 | 0.0 | 1.13 | 0.56 | 0.81 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2941 | 391 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 7YNF | 33960 | 2023-12-07 | 2022-07-30 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2988 | 378 | 9 | 0 | 8 | 0 | 0 | logfile |
✘ | 7YMJ | 33930 | 2023-12-07 | 2022-07-28 | 3.35 | 3.65 | 3.24 | 3.6 | 0.005 | 0.95 | 0.0 | 0.05 | 14.75 | 0.01 | 2.349 | 1.30 | 0.00 | 3.6 | 96.4 | 0.0 | -3.45 | 0.64 | 0.83 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3085 | 396 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 7YVM | 34132 | 2023-12-07 | 2022-08-19 | 3.5 | 3.56 | 3.31 | 3.6 | 0.009 | 1.38 | 6.0 | 0.09 | 13.48 | 0.01 | 2.166 | 28.59 | 1.57 | 8.9 | 90.6 | 0.5 | -4.19 | 0.55 | 0.72 | 1.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3126 | 420 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EX7 | 28653 | 2023-12-07 | 2022-10-24 | 3.53 | 3.77 | 3.48 | 3.8 | 0.004 | 0.69 | 0.0 | 0.04 | 13.31 | 0.01 | 2.211 | 6.36 | 0.00 | 4.2 | 95.8 | 0.0 | 0.68 | 0.59 | 0.76 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3177 | 414 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7QEV | 13942 | 2023-12-07 | 2021-12-03 | 2.9 | 3.46 | — | 3.1 | 0.009 | 0.86 | 0.0 | 0.05 | 13.68 | 0.00 | 2.164 | 5.92 | 0.00 | 4.3 | 95.7 | 0.0 | -0.15 | 0.79 | 0.86 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3204 | 383 | 6 | 0 | 8 | 8 | 0 | logfile |
✘ | 7YVL | 34131 | 2023-12-07 | 2022-08-19 | 3.3 | 3.44 | 3.21 | 3.4 | 0.011 | 1.16 | 5.0 | 0.07 | 12.98 | 0.01 | 2.155 | 18.66 | 1.42 | 9.0 | 90.6 | 0.5 | -4.93 | 0.57 | 0.77 | 1.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3224 | 419 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WRL | 32732 | 2023-12-07 | 2022-01-27 | 3.51 | 3.69 | — | 3.6 | 0.006 | 1.03 | 0.0 | 0.06 | 14.71 | 0.01 | 2.289 | 5.84 | 0.00 | 13.4 | 86.6 | 0.0 | -4.19 | 0.64 | 0.78 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3251 | 419 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8D8R | 27255 | 2023-12-07 | 2022-06-08 | 4.1 | 4.18 | 1.95 | 4.1 | 0.011 | 1.25 | 0.0 | 0.06 | 10.92 | 0.01 | 2.512 | 1.08 | 0.00 | 2.1 | 97.9 | 0.0 | 1.96 | 0.59 | 0.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3323 | 425 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 7SWP | 25478 | 2023-12-07 | 2021-11-20 | 3.8 | 3.74 | — | 4.0 | 0.008 | 0.92 | 0.0 | 0.05 | 12.87 | 0.01 | 2.202 | 40.14 | 0.00 | 12.1 | 87.9 | 0.0 | -2.17 | 0.51 | 0.71 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3372 | 436 | 3 | 0 | 0 | 0 | 0 | logfile |