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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7MDi | 23773 | 2023-12-15 | 2021-04-05 | 4.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.24 | — | — | — | 4.3 | 0.004 | 0.64 | 0.0 | 0.04 | 13.92 | 0.00 | 1.853 | 10.97 | 0.00 | 12.7 | 87.3 | 0.0 | -1.91 | — | 0.79 | 0.82 | — | 30608 | 4348 | 20 | 0 | 24 | 24 | 0 | logfile |
✘ | 7UVV | 26817 | 2023-12-14 | 2022-05-02 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.74 | — | — | 3.70 | 2.6 | 0.006 | 0.69 | 0.0 | 0.04 | 21.89 | 0.01 | 2.050 | 4.72 | 3.60 | 3.1 | 96.8 | 0.1 | 0.71 | — | 0.92 | 0.93 | 3.57 | 138294 | 5500 | 56 | 4447 | 3 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-12-08 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.004 | 0.66 | 0.0 | 0.04 | 21.59 | 0.00 | 2.070 | 19.23 | 0.00 | 8.0 | 91.6 | 0.5 | -1.26 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 7V88 | 31793 | 2023-12-16 | 2021-08-22 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.29 | — | — | 1.72 | 3.6 | 0.006 | 0.67 | 0.0 | 0.04 | 14.88 | 0.00 | 2.082 | 11.01 | 0.16 | 6.7 | 93.3 | 0.0 | -0.23 | — | 0.86 | 0.86 | 1.51 | 35098 | 4281 | 47 | 0 | 89 | 0 | 0 | logfile |
✘ | 6K9L | 9950 | 2023-12-15 | 2019-06-16 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -3.11 | — | — | — | 4.2 | 0.002 | 0.68 | 0.0 | 0.04 | 9.69 | 0.00 | 2.113 | 12.22 | 0.00 | 7.1 | 92.9 | 0.0 | 0.72 | — | 0.85 | 0.75 | — | 30601 | 5103 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8K7B | 36937 | 2023-12-09 | 2023-07-26 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9496 | 1180 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 8JA7 | 36125 | 2023-12-10 | 2023-05-05 | 3.02 | 3.83 | 3.16 | 3.5 | 0.004 | 0.62 | 0.0 | 0.11 | 13.44 | 0.00 | 2.158 | 15.41 | 0.00 | 4.8 | 95.2 | 0.0 | -3.10 | 0.71 | 0.86 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13601 | 1784 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 8J00 | 35879 | 2023-12-15 | 2023-04-09 | 3.0 | 3.42 | 3.20 | 3.4 | 0.011 | 0.92 | 0.0 | 0.03 | 19.38 | 0.00 | 1.898 | 10.29 | 0.06 | 2.9 | 97.1 | 0.0 | 2.25 | 0.59 | 0.72 | 1.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30184 | 1876 | 12 | 0 | 8 | 0 | 14944 | logfile |
✘ | 8FN2 | 29304 | 2023-12-15 | 2022-12-26 | 3.4 | 3.90 | 3.78 | 3.3 | 0.006 | 0.88 | 0.0 | 0.10 | 20.79 | 0.00 | 2.063 | 7.04 | 0.00 | 7.0 | 93.0 | 0.0 | -1.00 | 0.79 | 0.79 | 1.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 89742 | 3633 | 36 | 2874 | 2 | 0 | 0 | logfile |
✘ | 8BCW | 15970 | 2023-12-12 | 2022-10-17 | 2.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22313 | 2029 | 22 | 0 | 114 | 517 | 0 | logfile |
✘ | 8SKV | 40568 | 2023-12-13 | 2023-04-20 | 3.1 | 3.28 | 3.10 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 14.90 | 0.00 | 2.020 | 4.46 | 0.08 | 5.9 | 94.0 | 0.1 | -0.35 | 0.67 | 0.75 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23561 | 1632 | 15 | 0 | 15 | 0 | 11341 | logfile |
✘ | 8BLP | 16112 | 2023-12-08 | 2022-11-10 | 2.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9378 | 1065 | 9 | 0 | 66 | 66 | 0 | logfile |
✘ | 8HL3 | 34868 | 2023-12-07 | 2022-11-28 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8HL2 | 34867 | 2023-12-07 | 2022-11-28 | 4.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8oiE | 16890 | 2023-12-13 | 2023-03-22 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26151 | 3262 | 25 | 0 | 20 | 465 | 0 | logfile |
✘ | 8i9S | 35282 | 2023-12-08 | 2023-02-07 | 3.26 | 3.55 | 3.33 | 3.6 | 0.002 | 0.56 | 0.0 | 0.04 | 12.77 | 0.00 | 2.260 | 5.60 | 0.00 | 4.5 | 95.5 | 0.0 | 0.32 | 0.68 | 0.75 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8123 | 1113 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YUM | 34108 | 2023-12-11 | 2022-08-17 | 3.8 | 4.12 | 3.93 | 3.9 | 0.010 | 1.26 | 0.0 | 0.07 | 11.17 | 0.01 | 2.209 | 8.96 | 0.34 | 12.3 | 87.6 | 0.1 | -4.61 | 0.81 | 0.73 | 1.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16576 | 2128 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8Foi | 29350 | 2023-12-16 | 2022-12-30 | 2.5 | 3.28 | 2.62 | 3.1 | 0.007 | 0.93 | 0.0 | 0.05 | 14.53 | 0.01 | 2.040 | 3.73 | 1.97 | 2.5 | 97.5 | 0.0 | -0.08 | 0.68 | 0.83 | 5.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35120 | 2120 | 21 | 0 | 81 | 0 | 16834 | logfile |
✘ | 8J7B | 36037 | 2023-12-16 | 2023-04-27 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35077 | 3213 | 30 | 0 | 201 | 0 | 0 | logfile |
✘ | 8PBB | 17583 | 2023-12-10 | 2023-06-09 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13334 | 1684 | 6 | 0 | 2 | 0 | 0 | logfile |