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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8BMQ | 16121 | 2023-12-08 | 2022-11-10 | 3.6 | 3.94 | 3.58 | 4.0 | 0.006 | 0.76 | 0.0 | 0.05 | 15.48 | 0.00 | 2.190 | 7.37 | 0.00 | 5.5 | 94.5 | 0.0 | -0.07 | 0.72 | 0.81 | 2.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7784 | 987 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 8iDE | 35365 | 2023-12-08 | 2023-02-13 | 3.21 | 3.58 | 3.38 | 3.5 | 0.003 | 0.71 | 0.0 | 0.04 | 13.14 | 0.00 | 1.906 | 14.45 | 0.24 | 14.1 | 85.4 | 0.5 | -1.37 | 0.75 | 0.77 | 2.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8393 | 1177 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8F0H | 28757 | 2023-12-07 | 2022-11-02 | 3.18 | 3.63 | 3.09 | 3.5 | 0.003 | 0.50 | 0.0 | 0.04 | 9.40 | 0.00 | 2.256 | 7.02 | 0.38 | 4.0 | 96.0 | 0.0 | -0.58 | 0.74 | 0.80 | 3.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4959 | 634 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 7RiG | 24479 | 2023-12-15 | 2021-07-19 | 2.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32804 | 4128 | 12 | 0 | 22 | 278 | 0 | logfile |
✘ | 7YVM | 34132 | 2023-12-07 | 2022-08-19 | 3.5 | 3.56 | 3.31 | 3.6 | 0.009 | 1.38 | 6.0 | 0.09 | 13.48 | 0.01 | 2.166 | 28.59 | 1.57 | 8.9 | 90.6 | 0.5 | -4.19 | 0.55 | 0.72 | 1.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3126 | 420 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8S90 | 40233 | 2023-12-10 | 2023-03-27 | 4.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15323 | 2096 | 9 | 0 | 1 | 0 | 0 | logfile |
✘ | 7ZRZ | 14923 | 2023-12-08 | 2022-05-05 | 3.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8D2X | 27153 | 2023-12-08 | 2022-05-30 | 3.4 | 3.58 | 3.42 | 3.5 | 0.012 | 1.29 | 0.0 | 0.06 | 30.61 | 0.01 | 2.260 | 6.47 | 0.34 | 6.7 | 93.2 | 0.1 | -1.77 | 0.70 | 0.78 | 3.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6813 | 864 | 4 | 0 | 14 | 4 | 0 | logfile |
✘ | 8H87 | 34531 | 2023-12-08 | 2022-10-21 | 2.53 | 2.73 | 2.50 | 2.7 | 0.011 | 1.55 | 0.0 | 0.08 | 18.83 | 0.02 | 2.300 | 4.49 | 0.91 | 2.3 | 97.7 | 0.0 | -1.32 | 0.58 | 0.79 | 4.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7083 | 777 | 6 | 0 | 48 | 147 | 0 | logfile |
✘ | 7T4K | 25678 | 2023-12-08 | 2021-12-10 | 3.25 | 3.56 | 3.27 | 3.4 | 0.005 | 0.88 | 0.0 | 0.05 | 12.76 | 0.01 | 2.287 | 3.74 | 0.15 | 2.3 | 97.7 | 0.0 | 0.51 | 0.73 | 0.84 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6180 | 782 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8G1E | 29668 | 2023-12-15 | 2023-02-02 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32649 | 4148 | 12 | 0 | 18 | 90 | 0 | logfile |
✘ | 8oPo | 17078 | 2023-12-14 | 2023-04-07 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28965 | 3585 | 18 | 0 | 57 | 0 | 0 | logfile |
✘ | 8oiT | 16899 | 2023-12-09 | 2023-03-23 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 113095 | 9412 | 79 | 1704 | 265 | 0 | 0 | logfile |
✘ | 8A99 | 15273 | 2023-12-15 | 2022-06-28 | 2.5 | 2.78 | 2.74 | 2.6 | 0.007 | 1.23 | 2.0 | 0.25 | 17.40 | 0.01 | 2.214 | 6.33 | 0.21 | 5.1 | 94.9 | 0.1 | -0.13 | 0.72 | 0.63 | 1.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30897 | 3864 | 20 | 0 | 60 | 0 | 0 | logfile |
✘ | 8E44 | 27879 | 2023-12-09 | 2022-08-17 | 2.53 | 3.06 | 2.75 | 2.9 | 0.005 | 0.41 | 0.0 | 0.04 | 22.34 | 0.02 | 1.946 | 2.19 | 0.11 | 4.6 | 95.4 | 0.0 | 0.86 | 0.73 | 0.91 | 4.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115856 | 1179 | 11 | 3016 | 1 | 0 | 41883 | logfile |
✘ | 7N6B | 24206 | 2023-12-07 | 2021-06-08 | 2.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5942 | 757 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 8AZS | 15770 | 2023-12-08 | 2022-09-06 | 2.9 | 2.78 | 2.55 | 2.8 | 0.011 | 1.50 | 0.0 | 0.12 | 16.09 | 0.01 | 0.017 | 1346.55 | 0.00 | 3.1 | 96.9 | 0.0 | -1.98 | 0.27 | 0.40 | 5.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9036 | 1224 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 8FoA | 29343 | 2023-12-12 | 2022-12-30 | 2.66 | 2.96 | 2.81 | 2.9 | 0.023 | 1.52 | 0.0 | 0.53 | 22.53 | 0.01 | 2.298 | 7.30 | 0.42 | 5.2 | 94.7 | 0.0 | -5.28 | 0.66 | 0.84 | 4.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21287 | 2448 | 8 | 0 | 53 | 0 | 0 | logfile |
✘ | 8FoB | 29344 | 2023-12-12 | 2022-12-30 | 2.71 | 2.96 | 2.77 | 3.0 | 0.024 | 1.57 | 0.0 | 0.54 | 21.84 | 0.01 | 2.073 | 8.34 | 0.39 | 8.3 | 91.7 | 0.0 | -5.44 | 0.60 | 0.72 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20390 | 2376 | 12 | 0 | 46 | 52 | 0 | logfile |
✘ | 8HiR | 34827 | 2023-12-14 | 2022-11-21 | 3.18 | 3.42 | 3.31 | 3.4 | 0.003 | 0.77 | 8.0 | 0.05 | 15.77 | 0.00 | 2.000 | 11.70 | 0.09 | 2.8 | 97.2 | 0.0 | -1.87 | 0.62 | 0.80 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29168 | 3672 | 8 | 0 | 16 | 0 | 0 | logfile |