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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7MDi | 23773 | 2023-12-15 | 2021-04-05 | 4.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.24 | — | — | — | 4.3 | 0.004 | 0.64 | 0.0 | 0.04 | 13.92 | 0.00 | 1.853 | 10.97 | 0.00 | 12.7 | 87.3 | 0.0 | -1.91 | — | 0.79 | 0.82 | — | 30608 | 4348 | 20 | 0 | 24 | 24 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-12-08 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.004 | 0.66 | 0.0 | 0.04 | 21.59 | 0.00 | 2.070 | 19.23 | 0.00 | 8.0 | 91.6 | 0.5 | -1.26 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 6K9L | 9950 | 2023-12-15 | 2019-06-16 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -3.11 | — | — | — | 4.2 | 0.002 | 0.68 | 0.0 | 0.04 | 9.69 | 0.00 | 2.113 | 12.22 | 0.00 | 7.1 | 92.9 | 0.0 | 0.72 | — | 0.85 | 0.75 | — | 30601 | 5103 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7V88 | 31793 | 2023-12-16 | 2021-08-22 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.29 | — | — | 1.72 | 3.6 | 0.006 | 0.67 | 0.0 | 0.04 | 14.88 | 0.00 | 2.082 | 11.01 | 0.16 | 6.7 | 93.3 | 0.0 | -0.23 | — | 0.86 | 0.86 | 1.51 | 35098 | 4281 | 47 | 0 | 89 | 0 | 0 | logfile |
✘ | 7UVV | 26817 | 2023-12-14 | 2022-05-02 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.74 | — | — | 3.70 | 2.6 | 0.006 | 0.69 | 0.0 | 0.04 | 21.89 | 0.01 | 2.050 | 4.72 | 3.60 | 3.1 | 96.8 | 0.1 | 0.71 | — | 0.92 | 0.93 | 3.57 | 138294 | 5500 | 56 | 4447 | 3 | 0 | 0 | logfile |
✘ | 7XL3 | 33271 | 2023-12-13 | 2022-04-21 | 3.13 | 3.20 | — | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 12.03 | 0.00 | 2.263 | 4.77 | 1.08 | 2.9 | 97.1 | 0.0 | -4.73 | 0.73 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25700 | 3480 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 6N2Y | 9333 | 2023-12-16 | 2018-11-14 | 3.0 | 3.23 | 2.99 | 3.2 | 0.009 | 1.19 | 14.0 | 0.07 | 10.71 | 0.01 | 0.765 | 8.98 | 0.40 | 3.4 | 96.5 | 0.1 | -2.50 | 0.62 | 0.74 | 4.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35043 | 4696 | 27 | 0 | 26 | 0 | 0 | logfile |
✘ | 7BGD | 12178 | 2023-12-16 | 2021-01-06 | 3.2 | 3.27 | — | 3.2 | 0.008 | 1.30 | 0.0 | 0.06 | 22.57 | 0.01 | 2.327 | 3.64 | 2.16 | 8.0 | 91.7 | 0.3 | -5.26 | 0.85 | 0.83 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35364 | 1410 | 14 | 1128 | 0 | 0 | 0 | logfile |
✘ | 6oMB | 20124 | 2023-12-12 | 2019-04-18 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21815 | 2775 | 11 | 0 | 48 | 0 | 0 | logfile |
✘ | 7DK4 | 30702 | 2023-12-16 | 2020-11-23 | 3.8 | 3.20 | — | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 7.92 | 0.00 | 2.106 | 1.33 | 0.15 | 2.8 | 97.2 | 0.0 | -3.26 | 0.58 | 0.47 | 1.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34707 | 4470 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Koo | 22979 | 2023-12-17 | 2020-11-09 | 3.0 | 2.99 | 3.14 | 3.1 | 0.010 | 1.14 | 0.0 | 0.09 | 13.84 | 0.01 | 1.918 | 8.59 | 1.20 | 3.7 | 96.3 | 0.0 | -0.67 | 0.70 | 0.77 | 3.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37095 | 2315 | 25 | 0 | 40 | 0 | 18180 | logfile |
✘ | 6DG8 | 7883 | 2023-12-11 | 2018-05-17 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16715 | 1955 | 24 | 0 | 40 | 0 | 0 | logfile |
✘ | 7K43 | 22659 | 2023-12-15 | 2020-09-14 | 2.6 | 2.81 | 2.75 | 2.8 | 0.018 | 1.50 | 12.0 | 0.11 | 10.48 | 0.01 | 2.456 | 0.84 | 0.09 | 2.1 | 97.9 | 0.1 | 0.34 | 0.74 | 0.78 | 4.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30390 | 3783 | 33 | 0 | 78 | 0 | 0 | logfile |
✘ | 7MiP | 23859 | 2023-12-16 | 2021-04-17 | 2.4 | 2.51 | — | 2.5 | 0.015 | 2.04 | 8.0 | 0.13 | 14.66 | 0.01 | 1.950 | 2.53 | 1.04 | 3.4 | 96.4 | 0.2 | -1.24 | 0.58 | 0.74 | 4.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34800 | 2164 | 8 | 0 | 12 | 0 | 17328 | logfile |
✘ | 7VPD | 32063 | 2023-12-15 | 2021-10-15 | 3.77 | 4.04 | 3.88 | 3.9 | 0.005 | 0.79 | 0.0 | 0.05 | 20.16 | 0.01 | 1.979 | 6.99 | 0.44 | 3.6 | 96.4 | 0.0 | -0.05 | 0.82 | 0.73 | 1.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30924 | 3531 | 14 | 168 | 9 | 0 | 0 | logfile |
✘ | 7EDA | 31062 | 2023-12-12 | 2021-03-15 | 2.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22843 | 2567 | 32 | 0 | 67 | 16 | 0 | logfile |
✘ | 7D44 | 30569 | 2023-12-14 | 2020-09-22 | 4.0 | 4.14 | — | 4.0 | 0.006 | 0.86 | 0.0 | 0.05 | 14.78 | 0.00 | 2.049 | 20.50 | 0.28 | 16.3 | 83.6 | 0.1 | -5.25 | 0.80 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28391 | 3825 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7MGZ | 23831 | 2023-12-16 | 2021-04-14 | 2.8 | 2.90 | — | 2.9 | 0.014 | 2.03 | 8.0 | 0.11 | 16.60 | 0.02 | 1.574 | 3.95 | 1.66 | 3.4 | 96.5 | 0.2 | -1.41 | 0.59 | 0.76 | 4.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34852 | 2172 | 8 | 0 | 16 | 0 | 17316 | logfile |
✘ | 6N2Z | 9334 | 2023-12-16 | 2018-11-14 | 3.0 | 3.31 | 3.03 | 3.3 | 0.008 | 1.08 | 0.0 | 0.06 | 10.70 | 0.01 | 0.890 | 9.58 | 0.51 | 3.7 | 96.3 | 0.1 | -2.41 | 0.64 | 0.76 | 3.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35051 | 4692 | 27 | 0 | 26 | 0 | 0 | logfile |
✘ | 7Z29 | 14458 | 2023-12-08 | 2022-02-26 | 3.38 | 3.22 | 3.38 | 3.4 | 0.007 | 0.82 | 2.0 | 0.06 | 17.16 | 0.03 | 2.193 | 7.62 | 1.96 | 3.0 | 96.9 | 0.1 | -0.47 | 0.61 | 0.71 | 1.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8307 | 935 | 4 | 36 | 1 | 0 | 0 | logfile |