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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8EFB | 28077 | 2023-12-08 | 2022-09-08 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8947 | 1136 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7oE7 | 12861 | 2023-12-09 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 7o6E | 12738 | 2023-12-16 | 2021-04-10 | 2.1 | 1.78 | 2.15 | 1.6 | 0.017 | 1.10 | 0.0 | 0.07 | 18.13 | 0.01 | 2.110 | 3.49 | 0.00 | 2.3 | 97.7 | 0.0 | 2.10 | 0.87 | 0.88 | 6.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35304 | 4248 | 48 | 0 | 0 | 1392 | 0 | logfile |
✘ | 6RW6 | 10033 | 2023-12-16 | 2019-06-04 | 2.75 | 2.81 | — | 2.7 | 0.011 | 0.96 | 0.0 | 0.06 | 9.75 | 0.01 | 2.148 | 4.16 | 0.00 | 2.2 | 97.8 | 0.0 | -3.68 | 0.85 | 0.87 | 4.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98645 | 12425 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6SPD | 10282 | 2023-12-15 | 2019-09-01 | 3.28 | 3.35 | — | 3.3 | 0.010 | 1.16 | 0.0 | 0.06 | 23.86 | 0.01 | 0.400 | 15.51 | 1.26 | 12.2 | 87.1 | 0.7 | -5.12 | 0.66 | 0.50 | 0.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 90352 | 3458 | 32 | 2967 | 0 | 0 | 0 | logfile |
✘ | 7XTQ | 33452 | 2023-12-08 | 2022-05-17 | 3.2 | 2.29 | 3.30 | 2.1 | 0.004 | 0.75 | 0.0 | 0.05 | 12.54 | 0.01 | 2.192 | 5.84 | 0.00 | 3.1 | 96.9 | 0.0 | -0.37 | 0.73 | 0.74 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8010 | 1027 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 6RW9 | 10035 | 2023-12-15 | 2019-06-04 | 3.27 | 3.69 | — | 3.3 | 0.008 | 1.09 | 0.0 | 0.06 | 9.91 | 0.01 | 2.258 | 6.01 | 0.37 | 6.7 | 93.2 | 0.0 | -3.60 | 0.85 | 0.80 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 88700 | 11425 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RPW | 24624 | 2023-12-09 | 2021-08-04 | 4.38 | 4.64 | — | 4.4 | 0.003 | 0.57 | 0.0 | 0.04 | 19.29 | 0.00 | 1.756 | 18.05 | 9.97 | 11.3 | 88.6 | 0.1 | -2.82 | 0.77 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10594 | 1179 | 10 | 62 | 5 | 0 | 0 | logfile |
✘ | 7E0K | 30935 | 2023-12-08 | 2021-01-28 | 3.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8044 | 677 | 6 | 0 | 58 | 0 | 0 | logfile |
✘ | 8CVP | 27012 | 2023-12-09 | 2022-05-18 | 3.4 | 3.75 | 3.50 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 13.05 | 0.00 | 2.231 | 4.87 | 0.12 | 6.1 | 93.8 | 0.1 | -1.69 | 0.69 | 0.74 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10112 | 1484 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 7VZG | 32228 | 2023-12-12 | 2021-11-16 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22458 | 2402 | 25 | 0 | 119 | 6 | 0 | logfile |
✘ | 7WMP | 32616 | 2023-12-16 | 2022-01-15 | 3.6 | 3.34 | — | 3.3 | 0.005 | 0.79 | 0.0 | 0.05 | 16.33 | 0.00 | 2.038 | 7.53 | 1.32 | 7.4 | 92.6 | 0.0 | -2.54 | 0.71 | 0.85 | 1.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.65 | — | — | — | 1.10 | 98184 | 12204 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 6DMU | 7966 | 2023-12-12 | 2018-06-05 | 4.0 | 4.11 | — | 4.0 | 0.006 | 0.99 | 0.0 | 0.06 | 11.54 | 0.01 | 2.348 | 1.70 | 0.19 | 5.3 | 94.7 | 0.0 | -4.30 | 0.72 | 0.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19636 | 2428 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6MHZ | 9124 | 2023-12-08 | 2018-09-18 | 4.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7112 | 908 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 7VNJ | 32041 | 2023-12-15 | 2021-10-11 | 2.56 | 2.25 | — | 2.5 | 0.003 | 0.52 | 0.0 | 0.04 | 13.80 | 0.00 | 2.166 | 5.63 | 0.40 | 5.0 | 95.0 | 0.0 | -0.46 | 0.69 | 0.78 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30661 | 3856 | 15 | 0 | 21 | 0 | 0 | logfile |
✘ | 7BP9 | 30148 | 2023-12-16 | 2020-03-21 | 3.6 | 3.66 | — | 3.6 | 0.009 | 1.26 | 0.0 | 0.08 | 14.69 | 0.01 | 2.215 | 9.40 | 0.47 | 5.0 | 94.8 | 0.1 | -3.34 | 0.78 | 0.78 | 1.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35214 | 4440 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 7BP8 | 30147 | 2023-12-16 | 2020-03-21 | 3.9 | 4.00 | — | 3.9 | 0.008 | 1.38 | 0.0 | 0.08 | 15.25 | 0.01 | 2.313 | 5.30 | 0.18 | 5.3 | 94.7 | 0.0 | -3.18 | 0.80 | 0.80 | 1.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35190 | 4440 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 8A01 | 15044 | 2023-12-07 | 2022-05-26 | 3.2 | 3.25 | 3.20 | 3.2 | 0.002 | 0.44 | 0.0 | 0.05 | 14.81 | 0.00 | 2.289 | 4.13 | 0.00 | 2.0 | 98.0 | 0.0 | 0.02 | 0.48 | 0.86 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5511 | 717 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VL5 | 21230 | 2023-12-10 | 2020-01-22 | 4.5 | 4.57 | 4.20 | 4.4 | 0.019 | 1.72 | 0.0 | 0.10 | 10.43 | 0.01 | 2.242 | 0.64 | 0.20 | 1.2 | 98.8 | 0.0 | 0.88 | 0.79 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15039 | 1719 | 42 | 0 | 105 | 0 | 0 | logfile |
✘ | 6Po1 | 20406 | 2023-12-07 | 2019-07-03 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53244 | 3407 | 20 | 0 | 18 | 0 | 26717 | logfile |