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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7SiP | 25147 | 2023-12-08 | 2021-10-14 | 3.0 | 3.27 | — | 3.3 | 0.011 | 1.17 | 0.0 | 0.04 | 17.47 | 0.01 | 2.313 | 3.17 | 0.00 | 0.9 | 99.1 | 0.0 | 0.93 | 0.63 | 0.81 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7560 | 892 | 12 | 0 | 36 | 20 | 0 | logfile |
✘ | 7KEW | 22841 | 2023-12-10 | 2020-10-13 | 4.16 | 4.63 | — | 4.4 | 0.022 | 1.88 | 3.0 | 0.12 | 9.58 | 0.01 | 2.402 | 0.73 | 0.00 | 3.2 | 96.5 | 0.4 | 0.12 | 0.59 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13173 | 1650 | 21 | 0 | 24 | 0 | 0 | logfile |
✘ | 7SCB | 25032 | 2023-12-17 | 2021-09-27 | 2.5 | 3.49 | 2.56 | 3.0 | 0.007 | 1.51 | 3.0 | 0.08 | 17.11 | 0.02 | 2.465 | 3.44 | 2.69 | 3.6 | 96.2 | 0.2 | -4.74 | 0.88 | 0.84 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37229 | 4743 | 54 | 0 | 25 | 0 | 0 | logfile |
✘ | 7ZJE | 14746 | 2023-12-11 | 2022-04-10 | 3.12 | 3.70 | 3.28 | 3.6 | 0.002 | 0.57 | 0.0 | 0.04 | 11.99 | 0.00 | 2.254 | 7.29 | 0.19 | 8.3 | 91.1 | 0.5 | 0.64 | 0.66 | 0.80 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19284 | 2380 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 5W9J | 8785 | 2023-12-15 | 2017-06-23 | 4.8 | 4.91 | 5.09 | 4.7 | 0.013 | 1.57 | 0.0 | 0.07 | 11.98 | 0.02 | 1.881 | 5.79 | 0.90 | 4.0 | 94.8 | 1.2 | 0.53 | 0.78 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32958 | 4257 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6UZZ | 20965 | 2023-12-10 | 2019-11-16 | 3.1 | 3.48 | — | 3.4 | 0.009 | 0.92 | 0.0 | 0.06 | 10.61 | 0.01 | 2.325 | 2.53 | 0.24 | 1.8 | 98.0 | 0.2 | -4.22 | 0.60 | 0.81 | 3.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15832 | 1984 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 6SNH | 10257 | 2023-12-09 | 2019-08-24 | 3.9 | 4.16 | — | 3.9 | 0.008 | 1.24 | 1.0 | 0.06 | 14.35 | 0.00 | 2.181 | 19.70 | 1.49 | 11.0 | 88.9 | 0.1 | -4.30 | 0.65 | 0.71 | 2.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7315 | 918 | 4 | 0 | 1 | 1 | 0 | logfile |
✘ | 6VPV | 21320 | 2023-12-14 | 2020-02-04 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72192 | 6753 | 60 | 0 | 384 | 0 | 0 | logfile |
✘ | 7K9X | 22755 | 2023-12-09 | 2020-09-29 | 3.8 | 3.44 | — | 3.7 | 0.008 | 0.96 | 0.0 | 0.05 | 15.20 | 0.01 | 2.254 | 6.36 | 6.12 | 3.8 | 96.2 | 0.0 | -1.99 | 0.79 | 0.81 | 0.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10472 | 1372 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8C06 | 16355 | 2023-12-13 | 2022-12-16 | 2.7 | 2.32 | 2.57 | 2.7 | 0.003 | 0.76 | 0.0 | 0.05 | 13.59 | 0.01 | 2.333 | 2.28 | 0.00 | 5.5 | 94.5 | 0.0 | -1.51 | 0.67 | 0.75 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25324 | 3298 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 5W9o | 8790 | 2023-12-15 | 2017-06-23 | 4.5 | 4.59 | 4.45 | 4.5 | 0.013 | 1.66 | 0.0 | 0.08 | 10.49 | 0.01 | 1.325 | 7.98 | 0.08 | 3.9 | 95.4 | 0.7 | 1.29 | 0.73 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32958 | 4257 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 5ADY | 3133 | 2023-12-16 | 2015-08-25 | 4.5 | 4.75 | — | 4.5 | 0.011 | 1.28 | 0.0 | 0.06 | 24.17 | 0.01 | 1.391 | 57.89 | 0.21 | 11.7 | 81.7 | 6.7 | -3.35 | 0.72 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97364 | 4197 | 35 | 3020 | 2 | 0 | 0 | logfile |
✘ | 7CWS | 30486 | 2023-12-16 | 2020-08-31 | 3.4 | 3.74 | — | 3.3 | 0.008 | 1.13 | 10.0 | 0.07 | 10.38 | 0.01 | 1.462 | 32.38 | 0.20 | 6.8 | 93.0 | 0.2 | -3.39 | 0.70 | 0.56 | 2.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36389 | 4602 | 33 | 0 | 46 | 0 | 0 | logfile |
✘ | 5XNL | 6741 | 2023-12-16 | 2017-05-23 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98986 | 9364 | 136 | 0 | 490 | 1076 | 0 | logfile |
✘ | 6L7o | 0849 | 2023-12-16 | 2019-11-02 | 3.2 | 3.37 | — | 3.5 | 0.008 | 1.35 | 0.0 | 2.04 | 50.05 | 0.01 | 1.354 | 12.19 | 0.00 | 5.3 | 94.7 | 0.0 | -2.60 | 0.57 | 0.70 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35037 | 4120 | 34 | 0 | 83 | 0 | 0 | logfile |
✘ | 6YEF | 10791 | 2023-12-16 | 2020-03-24 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 141837 | 5351 | 60 | 4639 | 288 | 0 | 0 | logfile |
✘ | 7DX4 | 30895 | 2023-12-08 | 2021-01-18 | 3.6 | 3.96 | — | 3.8 | 0.007 | 1.00 | 0.0 | 0.06 | 11.25 | 0.01 | 0.766 | 7.28 | 0.23 | 6.0 | 93.7 | 0.3 | -4.20 | 0.71 | 0.79 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8234 | 1027 | 6 | 0 | 5 | 0 | 0 | logfile |
✘ | 7BLZ | 12228 | 2023-12-11 | 2021-01-19 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55800 | 2817 | 41 | 0 | 206 | 249 | 21916 | logfile |
✘ | 7T6X | 25730 | 2023-12-08 | 2021-12-14 | 3.83 | 4.14 | 3.83 | 4.0 | 0.022 | 1.97 | 0.0 | 0.13 | 10.54 | 0.02 | 1.505 | 3.89 | 0.00 | 3.8 | 96.1 | 0.1 | -0.16 | 0.77 | 0.82 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9217 | 1140 | 19 | 0 | 37 | 0 | 0 | logfile |
✘ | 6PZZ | 20541 | 2023-12-12 | 2019-08-01 | 3.6 | 4.09 | 3.67 | 3.9 | 0.024 | 1.89 | 0.0 | 0.11 | 10.11 | 0.01 | 2.292 | 1.66 | 0.00 | 2.8 | 97.0 | 0.2 | 0.57 | 0.80 | 0.85 | 4.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19772 | 2464 | 24 | 0 | 48 | 0 | 0 | logfile |