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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7RoD | 24592 | 2023-12-14 | 2021-07-30 | 3.8 | 4.39 | — | 3.9 | 0.004 | 0.70 | 0.0 | 0.05 | 11.72 | 0.01 | 2.388 | 12.51 | 0.00 | 4.3 | 95.7 | 0.0 | 2.79 | 0.69 | 0.87 | 2.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139258 | 19082 | 203 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Uii | 26546 | 2023-12-12 | 2022-03-29 | 2.6 | 2.91 | 2.65 | 2.9 | 0.003 | 0.61 | 0.0 | 0.05 | 13.58 | 0.00 | 2.234 | 5.76 | 0.00 | 5.1 | 94.9 | 0.0 | -0.77 | 0.60 | 0.87 | 4.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 130944 | 16926 | 93 | 0 | 186 | 186 | 0 | logfile |
✘ | 6BNP | 7116 | 2023-12-08 | 2017-11-17 | 4.6 | 4.61 | 3.78 | 4.4 | 0.015 | 2.10 | 24.0 | 0.11 | 16.18 | 0.02 | 1.814 | 0.55 | 1.80 | 8.3 | 90.3 | 1.3 | -3.94 | 0.48 | 0.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56792 | 7160 | 22 | 0 | 16 | 0 | 0 | logfile |
✘ | 6SAG | 10130 | 2023-12-07 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 13.90 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✘ | 3J9Q | 6270 | 2023-12-16 | 2015-02-17 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.24 | — | — | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99648 | 13224 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 8iX0 | 35785 | 2023-12-08 | 2023-03-31 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8238 | 654 | 6 | 0 | 57 | 0 | 0 | logfile |
✘ | 8oPN | 17077 | 2023-12-14 | 2023-04-07 | 4.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28543 | 3555 | 13 | 0 | 40 | 0 | 0 | logfile |
✘ | 8Do4 | 27590 | 2023-12-12 | 2022-07-12 | 3.2 | 3.38 | 3.21 | 3.5 | 0.005 | 0.81 | 0.0 | 0.05 | 16.40 | 0.00 | 2.056 | 12.09 | 1.54 | 3.4 | 96.6 | 0.0 | -0.40 | 0.69 | 0.68 | 1.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20163 | 2625 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ETU | 28599 | 2023-12-14 | 2022-10-17 | 2.8 | 2.33 | 2.89 | 2.1 | 0.005 | 0.92 | 2.0 | 0.05 | 17.82 | 0.01 | 1.580 | 5.60 | 0.06 | 3.5 | 96.5 | 0.0 | -1.69 | 0.73 | 0.79 | 2.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28670 | 3656 | 16 | 0 | 6 | 0 | 0 | logfile |
✘ | 8FNK | 29316 | 2023-12-15 | 2022-12-27 | 3.7 | 4.05 | 3.77 | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 17.78 | 0.00 | 2.198 | 10.18 | 0.32 | 3.9 | 96.1 | 0.0 | 0.42 | 0.77 | 0.75 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30831 | 3656 | 11 | 94 | 0 | 0 | 0 | logfile |
✘ | 6XKJ | 22219 | 2023-12-09 | 2020-06-26 | 3.54 | 3.39 | — | 3.4 | 0.009 | 0.83 | 0.0 | 0.05 | 14.92 | 0.00 | 2.246 | 12.86 | 0.00 | 2.4 | 97.6 | 0.0 | 0.54 | 0.62 | 0.85 | 1.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11056 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8AM5 | 15522 | 2023-12-15 | 2022-08-02 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32746 | 3194 | 29 | 0 | 146 | 0 | 0 | logfile |
✘ | 8CPE | 16780 | 2023-12-07 | 2023-03-02 | 4.0 | 3.90 | 2.90 | 4.2 | 0.002 | 0.93 | 0.0 | 0.06 | 12.17 | 0.00 | 2.224 | 3.26 | 0.00 | 4.1 | 95.9 | 0.0 | -3.80 | 0.54 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5520 | 385 | 5 | 0 | 0 | 0 | 2615 | logfile |
✘ | 8WAU | 37405 | 2023-12-16 | 2023-09-08 | 2.78 | 3.17 | 2.87 | 3.2 | 0.008 | 0.81 | 0.0 | 0.05 | 15.34 | 0.00 | 1.850 | 10.31 | 1.38 | 3.9 | 95.9 | 0.2 | 0.44 | 0.52 | 0.55 | 2.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35721 | 4182 | 25 | 107 | 11 | 0 | 23 | logfile |
✘ | 8J7A | 36036 | 2023-12-16 | 2023-04-27 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34246 | 3121 | 30 | 0 | 198 | 0 | 0 | logfile |
✘ | 8EDG | 28034 | 2023-12-13 | 2022-09-04 | 4.64 | 4.06 | 4.63 | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 21.43 | 0.00 | 2.143 | 12.47 | 0.05 | 4.8 | 95.2 | 0.0 | -0.34 | 0.69 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23358 | 2348 | 18 | 216 | 6 | 0 | 0 | logfile |
✘ | 8GKG | 40183 | 2023-12-11 | 2023-03-18 | 4.38 | 3.94 | 4.39 | 4.9 | 0.002 | 0.54 | 0.0 | 0.04 | 12.43 | 0.00 | 2.293 | 5.72 | 0.00 | 16.3 | 83.5 | 0.2 | -2.00 | 0.45 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17160 | 2700 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 8FLK | 29281 | 2023-12-12 | 2022-12-21 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20356 | 1276 | 6 | 0 | 4 | 0 | 10124 | logfile |
✘ | 8E2U | 27846 | 2023-12-10 | 2022-08-16 | 3.48 | 3.78 | 3.51 | 3.9 | 0.006 | 0.97 | 0.0 | 0.05 | 14.01 | 0.01 | 2.162 | 4.01 | 0.94 | 8.2 | 91.4 | 0.3 | -2.08 | 0.71 | 0.78 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13228 | 880 | 3 | 0 | 0 | 0 | 6581 | logfile |
✘ | 5LJV | 4062 | 2023-12-10 | 2016-07-21 | 3.64 | 3.75 | — | 3.7 | 0.030 | 2.85 | 85.0 | 0.16 | 18.81 | 0.02 | 2.070 | 21.28 | 11.82 | 7.4 | 89.7 | 2.9 | -4.53 | 0.71 | 0.84 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15000 | 1950 | 12 | 0 | 12 | 0 | 0 | logfile |