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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8GNB | 34159 | 2023-12-10 | 2022-08-23 | 3.9 | 5.27 | 4.76 | 5.1 | 0.004 | 0.94 | 0.0 | 0.05 | 12.92 | 0.01 | 2.231 | 14.24 | 0.00 | 5.1 | 94.9 | 0.0 | -0.65 | 0.53 | 0.62 | 0.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15770 | 2010 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 8SS6 | 40745 | 2023-12-15 | 2023-05-08 | 3.01 | 3.32 | 3.16 | 3.3 | 0.017 | 1.38 | 0.0 | 0.28 | 19.01 | 0.01 | 2.303 | 4.80 | 1.05 | 7.9 | 91.7 | 0.4 | -5.47 | 0.68 | 0.76 | 3.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31609 | 3794 | 12 | 0 | 46 | 0 | 0 | logfile |
✘ | 8iV5 | 35741 | 2023-12-07 | 2023-03-26 | 3.77 | 3.99 | 3.73 | 4.0 | 0.007 | 0.88 | 0.0 | 0.06 | 13.87 | 0.01 | 2.297 | 5.11 | 0.91 | 7.9 | 92.1 | 0.0 | -3.73 | 0.48 | 0.70 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5096 | 645 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 8HKU | 34860 | 2023-12-07 | 2022-11-28 | 2.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8J03 | 35882 | 2023-12-15 | 2023-04-09 | 2.7 | 2.89 | 2.83 | 3.2 | 0.008 | 0.75 | 0.0 | 0.03 | 18.80 | 0.00 | 1.872 | 12.55 | 2.27 | 4.4 | 95.6 | 0.0 | 1.00 | 0.50 | 0.68 | 1.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30316 | 1892 | 12 | 0 | 4 | 0 | 15084 | logfile |
✘ | 8JAU | 36134 | 2023-12-11 | 2023-05-07 | 3.22 | 3.52 | 3.25 | 3.6 | 0.004 | 0.52 | 0.0 | 0.04 | 14.40 | 0.00 | 2.183 | 7.18 | 0.05 | 4.0 | 96.0 | 0.0 | -0.99 | 0.70 | 0.75 | 3.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17064 | 2096 | 11 | 0 | 1 | 0 | 0 | logfile |
✘ | 8HNL | 34915 | 2023-12-08 | 2022-12-08 | 2.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8944 | 1135 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 8BJM | 16089 | 2023-12-11 | 2022-11-04 | 2.2 | 2.55 | 2.08 | 2.4 | 0.005 | 0.55 | 0.0 | 0.04 | 13.85 | 0.00 | 2.200 | 4.88 | 1.17 | 0.5 | 99.5 | 0.0 | 2.08 | 0.83 | 0.88 | 5.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16655 | 2050 | 22 | 0 | 0 | 498 | 0 | logfile |
✘ | 8B9i | 15932 | 2023-12-10 | 2022-10-06 | 2.95 | 3.92 | 2.99 | 3.5 | 0.011 | 1.24 | 0.0 | 0.05 | 19.26 | 0.01 | 1.963 | 11.55 | 2.31 | 3.6 | 96.3 | 0.1 | 0.95 | 0.84 | 0.75 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8026 | 984 | 4 | 11 | 3 | 5 | 0 | logfile |
✘ | 8THG | 41261 | 2023-12-10 | 2023-07-16 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13168 | 1565 | 9 | 0 | 23 | 4 | 0 | logfile |
✘ | 8JSW | 36628 | 2023-12-07 | 2023-06-20 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2859 | 384 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 8JZS | 36752 | 2023-12-08 | 2023-07-06 | 2.95 | 3.15 | 2.92 | 3.2 | 0.008 | 0.93 | 0.0 | 0.06 | 13.27 | 0.01 | 2.299 | 10.90 | 0.00 | 4.4 | 95.2 | 0.4 | 0.71 | 0.69 | 0.82 | 1.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7500 | 972 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 8J00 | 35879 | 2023-12-15 | 2023-04-09 | 3.0 | 3.42 | 3.20 | 3.4 | 0.011 | 0.92 | 0.0 | 0.03 | 19.38 | 0.00 | 1.898 | 10.29 | 0.06 | 2.9 | 97.1 | 0.0 | 2.25 | 0.59 | 0.72 | 1.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30184 | 1876 | 12 | 0 | 8 | 0 | 14944 | logfile |
✘ | 8SHE | 40485 | 2023-12-10 | 2023-04-13 | 2.8 | 3.49 | 2.89 | 3.2 | 0.005 | 0.56 | 0.0 | 0.04 | 14.08 | 0.00 | 1.875 | 6.81 | 0.00 | 3.6 | 96.4 | 0.0 | 1.64 | 0.86 | 0.89 | 2.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66179 | 8601 | 49 | 0 | 48 | 19 | 0 | logfile |
✘ | 8oiE | 16890 | 2023-12-13 | 2023-03-22 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26151 | 3262 | 25 | 0 | 20 | 465 | 0 | logfile |
✘ | 8JA7 | 36125 | 2023-12-10 | 2023-05-05 | 3.02 | 3.83 | 3.16 | 3.5 | 0.004 | 0.62 | 0.0 | 0.11 | 13.44 | 0.00 | 2.158 | 15.41 | 0.00 | 4.8 | 95.2 | 0.0 | -3.10 | 0.71 | 0.86 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13601 | 1784 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 8K7B | 36937 | 2023-12-09 | 2023-07-26 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9496 | 1180 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 8QEC | 18351 | 2023-12-11 | 2023-08-31 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17802 | 1101 | 6 | 0 | 12 | 0 | 8699 | logfile |
✘ | 8Foi | 29350 | 2023-12-16 | 2022-12-30 | 2.5 | 3.28 | 2.62 | 3.1 | 0.007 | 0.93 | 0.0 | 0.05 | 14.53 | 0.01 | 2.040 | 3.73 | 1.97 | 2.5 | 97.5 | 0.0 | -0.08 | 0.68 | 0.83 | 5.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35120 | 2120 | 21 | 0 | 81 | 0 | 16834 | logfile |
✘ | 8SSA | 40749 | 2023-12-15 | 2023-05-08 | 3.88 | 4.18 | 3.96 | 4.1 | 0.010 | 1.32 | 0.0 | 0.06 | 14.93 | 0.01 | 2.213 | 6.33 | 1.00 | 11.4 | 87.6 | 1.0 | -5.19 | 0.70 | 0.77 | 2.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30888 | 3840 | 10 | 0 | 13 | 0 | 0 | logfile |