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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6N7R | 0361 | 2023-12-16 | 2018-11-28 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35750 | 2908 | 19 | 568 | 91 | 0 | 0 | logfile |
✘ | 6V22 | 21025 | 2023-12-16 | 2019-11-22 | 3.2 | 3.50 | — | 3.4 | 0.014 | 1.41 | 0.0 | 0.06 | 18.52 | 0.02 | 2.257 | 5.84 | 0.21 | 4.3 | 95.7 | 0.0 | -3.73 | 0.73 | 0.86 | 3.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37004 | 4380 | 16 | 0 | 100 | 0 | 0 | logfile |
✘ | 7K1K | 22625 | 2023-12-17 | 2020-09-07 | 4.1 | 4.21 | — | 4.1 | 0.008 | 1.12 | 0.0 | 0.06 | 17.54 | 0.01 | 2.224 | 7.18 | 0.91 | 14.0 | 85.5 | 0.4 | -5.07 | 0.73 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38243 | 4620 | 7 | 74 | 0 | 0 | 0 | logfile |
✘ | 7P48 | 13191 | 2023-12-14 | 2021-07-09 | 2.9 | 2.80 | 2.94 | 2.8 | 0.020 | 1.48 | 19.0 | 0.07 | 23.42 | 0.01 | 1.822 | 12.33 | 0.92 | 13.5 | 86.2 | 0.4 | -5.47 | 0.77 | 0.78 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138826 | 5925 | 57 | 4329 | 7 | 0 | 0 | logfile |
✘ | 6TAY | 10430 | 2023-12-16 | 2019-10-31 | 3.2 | 2.55 | — | 2.9 | 0.011 | 1.15 | 0.0 | 0.06 | 11.36 | 0.01 | 2.066 | 4.61 | 0.28 | 8.9 | 91.0 | 0.1 | -3.72 | 0.86 | 0.82 | 3.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35241 | 4350 | 1 | 0 | 71 | 0 | 0 | logfile |
✘ | 6oQU | 20170 | 2023-12-16 | 2019-04-29 | 3.2 | 3.50 | — | 3.3 | 0.009 | 0.93 | 2.0 | 0.05 | 15.07 | 0.00 | 1.718 | 4.70 | 2.92 | 3.5 | 96.5 | 0.0 | -2.70 | 0.75 | 0.86 | 3.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36971 | 4851 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 6RWN | 10043 | 2023-12-11 | 2019-06-05 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18346 | 2076 | 26 | 86 | 16 | 8 | 0 | logfile |
✘ | 5GL0 | 9520 | 2023-12-08 | 2016-07-07 | 4.2 | 4.40 | — | 4.2 | 0.018 | 1.72 | 17.0 | 0.10 | 11.34 | 0.01 | 1.957 | 21.25 | 0.51 | 6.5 | 90.6 | 2.9 | -2.58 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111000 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 6KNG | 0731 | 2023-12-08 | 2019-08-05 | 2.85 | 3.15 | — | 3.1 | 0.005 | 0.65 | 0.0 | 0.05 | 14.34 | 0.00 | 2.093 | 4.97 | 3.68 | 0.9 | 99.1 | 0.0 | -2.31 | 0.83 | 0.91 | 4.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7749 | 1002 | 6 | 0 | 6 | 0 | 0 | logfile |
✘ | 3J8H | 2807 | 2023-12-08 | 2014-10-26 | 3.8 | 3.95 | — | 3.8 | 0.006 | 1.31 | 4.0 | 0.05 | 10.89 | 0.01 | 1.488 | 33.49 | 2.47 | 5.3 | 92.8 | 1.9 | -2.06 | 0.65 | 0.64 | 1.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111160 | 12796 | 12 | 0 | 2276 | 0 | 0 | logfile |
✘ | 7K0K | 22600 | 2023-12-08 | 2020-09-04 | 2.6 | 2.96 | — | 2.9 | 0.006 | 0.68 | 0.0 | 0.05 | 12.49 | 0.00 | 1.915 | 7.43 | 0.00 | 2.2 | 97.8 | 0.0 | 0.53 | 0.68 | 0.85 | 4.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7615 | 964 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 6PLR | 20373 | 2023-12-10 | 2019-07-01 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14685 | 1735 | 15 | 0 | 75 | 0 | 0 | logfile |
✘ | 7KU7 | 23035 | 2023-12-10 | 2020-11-24 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15666 | 1807 | 16 | 68 | 8 | 0 | 0 | logfile |
✘ | 7P2Y | 13174 | 2023-12-17 | 2021-07-06 | 3.1 | 3.84 | — | 3.5 | 0.004 | 0.70 | 0.0 | 0.04 | 12.08 | 0.00 | 2.088 | 10.47 | 0.08 | 3.8 | 96.2 | 0.0 | 0.12 | 0.82 | 0.87 | 2.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37172 | 4904 | 30 | 0 | 9 | 3 | 0 | logfile |
✘ | 6U8Q | 20689 | 2023-12-12 | 2019-09-05 | 4.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21129 | 2442 | 18 | 96 | 6 | 0 | 0 | logfile |
✘ | 5GKY | 9518 | 2023-12-08 | 2016-07-07 | 3.8 | 4.18 | — | 4.0 | 0.017 | 1.70 | 19.0 | 0.10 | 11.29 | 0.01 | 1.789 | 19.04 | 0.51 | 5.8 | 91.8 | 2.5 | -2.71 | 0.73 | 0.79 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111036 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 8ERA | 28551 | 2023-12-14 | 2022-10-11 | 2.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29054 | 3644 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 6PLU | 20376 | 2023-12-10 | 2019-07-01 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14665 | 1720 | 15 | 0 | 80 | 0 | 0 | logfile |
✘ | 7WDB | 32436 | 2023-12-12 | 2021-12-21 | 2.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22400 | 2660 | 8 | 0 | 28 | 0 | 0 | logfile |
✘ | 6KPi | 0747 | 2023-12-09 | 2019-08-15 | 2.43 | 3.50 | — | 3.0 | 0.008 | 0.67 | 0.0 | 0.06 | 11.99 | 0.00 | 1.974 | 5.19 | 0.00 | 7.1 | 92.9 | 0.0 | -4.39 | 0.85 | 0.88 | 4.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62209 | 3936 | 24 | 0 | 24 | 0 | 31225 | logfile |