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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6JQL | 9873 | 2023-12-15 | 2019-03-31 | 2.9 | 3.07 | — | 3.1 | 0.004 | 0.81 | 0.0 | 0.05 | 10.10 | 0.01 | 2.305 | 6.74 | 0.16 | 4.8 | 95.2 | 0.0 | -4.01 | 0.77 | 0.84 | 3.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30648 | 4068 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6o90 | 0660 | 2023-12-14 | 2019-03-12 | 3.49 | 3.96 | — | 3.5 | 0.007 | 1.04 | 0.0 | 0.05 | 21.95 | 0.01 | 2.125 | 5.34 | 0.46 | 13.8 | 85.9 | 0.3 | -4.68 | 0.86 | 0.82 | 1.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138532 | 5232 | 53 | 4547 | 4 | 0 | 0 | logfile |
✘ | 7V9A | 31813 | 2023-12-11 | 2021-08-24 | 3.94 | 3.46 | — | 3.4 | 0.002 | 0.58 | 0.0 | 0.03 | 18.68 | 0.00 | 2.260 | 6.87 | 0.00 | 5.2 | 94.8 | 0.0 | -4.05 | 0.66 | 0.57 | 0.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16876 | 1723 | 10 | 146 | 0 | 0 | 0 | logfile |
✘ | 7PHP | 13424 | 2023-12-08 | 2021-08-18 | 3.47 | 3.48 | — | 3.6 | 0.017 | 0.90 | 0.0 | 0.05 | 14.25 | 0.01 | 2.182 | 6.60 | 0.11 | 7.0 | 93.0 | 0.0 | -1.50 | 0.72 | 0.83 | 3.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8647 | 1134 | 8 | 0 | 0 | 21 | 0 | logfile |
✘ | 6TDW | 10469 | 2023-12-10 | 2019-11-10 | 3.8 | 4.05 | 3.54 | 4.0 | 0.007 | 0.84 | 0.0 | 0.08 | 13.71 | 0.01 | 2.078 | 4.92 | 0.15 | 7.2 | 92.8 | 0.0 | -1.91 | 0.70 | 0.78 | 1.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12997 | 841 | 7 | 0 | 0 | 0 | 6561 | logfile |
✘ | 7ZQC | 14870 | 2023-12-16 | 2022-04-29 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 82030 | 4165 | 39 | 0 | 351 | 621 | 31531 | logfile |
✘ | 7AMY | 11827 | 2023-12-13 | 2020-10-09 | 3.75 | 3.87 | 3.71 | 3.8 | 0.010 | 0.89 | 0.0 | 0.05 | 14.93 | 0.00 | 2.177 | 20.18 | 0.66 | 13.8 | 85.9 | 0.3 | -5.40 | 0.82 | 0.86 | 1.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24849 | 3177 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 7BKE | 12212 | 2023-12-13 | 2021-01-15 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24816 | 3176 | 18 | 0 | 26 | 0 | 0 | logfile |
✘ | 7YS6 | 34073 | 2023-12-08 | 2022-08-11 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8794 | 1129 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7F9o | 31498 | 2023-12-10 | 2021-07-04 | 4.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106329 | 11553 | 82 | 0 | 461 | 0 | 0 | logfile |
✘ | 7YVS | 34137 | 2023-12-15 | 2022-08-19 | 2.8 | 3.06 | 2.90 | 3.0 | 0.004 | 0.60 | 0.0 | 0.05 | 13.86 | 0.00 | 2.173 | 6.15 | 0.98 | 4.9 | 95.1 | 0.0 | -0.49 | 0.77 | 0.88 | 3.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30593 | 3856 | 15 | 0 | 21 | 0 | 0 | logfile |
✘ | 7ZDG | 14645 | 2023-12-08 | 2022-03-29 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9007 | 1157 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 8ENN | 28274 | 2023-12-11 | 2022-09-30 | 2.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16749 | 1974 | 12 | 0 | 9 | 858 | 0 | logfile |
✘ | 8DDQ | 27338 | 2023-12-15 | 2022-06-18 | 2.7 | 2.93 | 2.76 | 2.9 | 0.015 | 0.96 | 0.0 | 0.07 | 12.33 | 0.00 | 2.231 | 4.92 | 1.61 | 3.4 | 96.6 | 0.0 | 0.95 | 0.77 | 0.85 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31842 | 3848 | 12 | 0 | 78 | 0 | 0 | logfile |
✘ | 7PiJ | 13438 | 2023-12-08 | 2021-08-20 | 3.78 | 4.14 | — | 4.1 | 0.015 | 1.17 | 0.0 | 0.05 | 13.54 | 0.01 | 1.166 | 13.45 | 0.11 | 10.6 | 89.3 | 0.1 | -3.26 | 0.50 | 0.53 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8194 | 1068 | 8 | 0 | 0 | 16 | 0 | logfile |
✘ | 6WU9 | 21907 | 2023-12-14 | 2020-05-04 | 2.9 | 2.24 | — | 2.7 | 0.011 | 1.15 | 0.0 | 0.06 | 22.78 | 0.01 | 1.989 | 5.73 | 16.81 | 10.7 | 88.9 | 0.3 | -3.84 | 0.70 | 0.84 | 3.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 82295 | 2697 | 30 | 2855 | 3 | 0 | 0 | logfile |
✘ | 6Y5R | 10703 | 2023-12-10 | 2020-02-25 | 3.76 | 3.87 | 3.73 | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 11.39 | 0.00 | 2.147 | 7.90 | 0.07 | 4.4 | 95.6 | 0.0 | -2.26 | 0.68 | 0.85 | 2.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13592 | 1758 | 6 | 0 | 8 | 0 | 0 | logfile |
✘ | 7UPX | 26677 | 2023-12-07 | 2022-04-18 | 3.2 | 3.46 | — | 3.4 | 0.013 | 1.88 | 4.0 | 0.11 | 13.52 | 0.01 | 2.176 | 5.28 | 2.20 | 5.4 | 93.2 | 1.4 | -0.66 | 0.64 | 0.88 | 3.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4930 | 635 | 4 | 0 | 3 | 0 | 0 | logfile |
✘ | 8CYi | 27078 | 2023-12-10 | 2022-05-23 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14621 | 932 | 3 | 0 | 2 | 0 | 7191 | logfile |
✘ | 7U9X | 26409 | 2023-12-14 | 2022-03-11 | 2.58 | 2.84 | — | 1.7 | 0.003 | 0.61 | 0.0 | 0.04 | 14.38 | 0.00 | 2.080 | 9.25 | 0.11 | 2.3 | 97.7 | 0.0 | 1.30 | 0.87 | 0.83 | 3.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138588 | 17324 | 12 | 0 | 12 | 0 | 0 | logfile |