Table showing results for February 2025

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RR0	24649	2025-02-10	2021-08-08	3.12	3.40	—	3.4	0.004	0.97	0.0	0.06	12.28	0.01	2.327	2.79	0.00	1.4	98.6	0.0	0.12	0.75	0.77	2.73	3.4	0.003	0.75	0.0	0.04	16.14	0.00	2.473	7.44	2.53	2.2	97.8	0.0	0.22	1.25	0.77	0.80	2.90	3297	422	4	0	1	0	0	logfile
✔	7NLL	12465	2025-02-12	2021-02-22	2.89	3.42	—	3.2	0.003	0.55	0.0	0.26	15.47	0.00	2.255	7.02	0.00	0.6	99.4	0.0	1.34	0.80	0.82	3.17	3.1	0.004	0.65	0.0	0.04	15.05	0.00	2.514	6.91	4.02	3.1	96.9	0.0	-0.28	1.21	0.82	0.87	3.55	5056	656	6	0	2	0	0	logfile
✔	7RYC	24733	2025-02-12	2021-08-24	2.9	2.34	—	3.0	0.006	0.86	0.0	0.05	13.76	0.00	2.198	5.49	0.38	4.9	95.1	0.0	-2.98	0.80	0.77	2.64	3.0	0.003	0.65	0.0	0.04	15.85	0.00	2.312	2.43	1.88	2.9	97.1	0.0	-0.33	0.46	0.81	0.80	2.55	8277	1125	7	0	2	0	0	logfile
✔	7oU0	13071	2025-02-14	2021-06-10	3.8	3.58	—	3.7	0.013	1.77	0.0	0.11	15.37	0.01	1.798	4.10	0.09	1.5	98.5	0.0	2.70	0.81	0.81	1.19	3.8	0.004	0.71	0.0	0.04	17.50	0.00	1.898	9.21	2.86	2.8	97.2	0.1	1.53	2.12	0.82	0.83	1.60	10335	1313	4	0	6	0	0	logfile
✘	8iD9	35360	2025-02-12	2023-02-12	3.0	3.00	—	2.9	0.005	0.73	0.0	0.05	13.95	0.02	2.182	9.55	0.13	2.7	97.3	0.0	-0.21	0.88	0.84	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7996	1095	6	0	1	0	0	logfile
✔	7QEV	13942	2025-02-11	2021-12-03	2.9	3.46	—	3.1	0.009	0.86	0.0	0.05	13.68	0.00	2.164	5.92	0.00	4.3	95.7	0.0	-0.15	0.79	0.86	3.19	3.1	0.004	0.70	0.0	0.04	16.24	0.00	2.478	6.39	1.46	4.5	95.5	0.0	1.96	1.67	0.79	0.87	2.33	3204	383	6	0	8	8	0	logfile
✔	8HHM	34804	2025-02-11	2022-11-16	3.08	3.57	3.10	3.3	0.005	0.53	0.0	0.04	20.70	0.00	2.106	6.39	3.34	2.9	97.1	0.0	1.27	0.81	0.82	2.37	3.3	0.004	0.57	0.0	0.04	21.28	0.00	2.055	6.87	2.39	2.5	97.5	0.0	2.10	1.78	0.82	0.83	2.33	5558	516	7	72	2	0	0	logfile
✔	7Vo0	32048	2025-02-12	2021-10-12	3.4	3.66	3.41	3.5	0.004	0.57	0.0	0.04	21.17	0.00	1.938	7.44	0.17	1.8	98.2	0.0	0.39	0.73	0.66	1.10	3.6	0.003	0.56	0.0	0.04	22.80	0.00	1.940	8.14	2.89	2.6	97.4	0.0	1.29	1.37	0.83	0.83	1.24	7661	786	14	86	18	0	0	logfile
✔	7N8i	24237	2025-02-11	2021-06-14	3.0	3.22	3.02	3.2	0.011	1.23	0.0	0.07	10.64	0.01	2.309	0.71	0.26	1.6	98.4	0.0	1.04	0.75	0.87	5.46	3.2	0.006	0.66	0.0	0.05	14.25	0.00	2.578	3.68	2.06	2.1	97.9	0.0	1.06	1.29	0.73	0.91	5.52	3600	445	4	0	5	0	0	logfile
✔	7D69	30591	2025-02-14	2020-09-29	3.57	3.34	—	3.6	0.009	0.88	0.0	0.05	28.86	0.01	2.062	19.76	0.00	5.2	94.8	0.0	-1.18	0.78	0.80	2.26	3.6	0.003	0.59	0.0	0.03	28.12	0.00	2.558	11.97	1.94	3.2	96.8	0.0	2.15	1.17	0.77	0.79	1.41	10857	727	10	250	0	0	0	logfile
✔	7WD8	32434	2025-02-11	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	8.80	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.4	0.003	0.71	0.0	0.04	12.76	0.00	2.585	12.07	0.00	4.7	95.2	0.2	-0.11	1.92	0.62	0.66	—	4029	524	4	0	0	0	0	logfile
✔	7WLK	32586	2025-02-14	2022-01-13	3.6	3.50	—	3.6	0.010	0.99	0.0	0.06	15.42	0.00	1.853	14.07	0.10	6.7	93.3	0.0	0.27	0.72	0.79	1.77	3.6	0.003	0.69	0.0	0.04	15.78	0.00	2.329	9.02	1.59	4.8	95.2	0.0	1.13	1.18	0.72	0.79	1.07	9461	1135	2	0	17	0	0	logfile
✔	6Y5L	10701	2025-02-11	2020-02-25	3.6	3.66	2.91	3.6	0.004	0.70	0.0	0.05	14.31	0.01	2.032	5.91	0.00	7.8	92.2	0.0	-2.14	0.67	0.72	1.57	3.6	0.005	1.11	0.0	0.05	17.97	0.01	2.345	18.10	2.99	5.2	94.8	0.0	0.17	0.99	0.70	0.75	1.27	3855	477	9	0	3	0	0	logfile
✔	7F6G	31479	2025-02-13	2021-06-25	2.9	3.07	—	3.0	0.009	0.98	0.0	0.08	13.90	0.00	2.197	4.74	0.65	3.0	97.0	0.0	-0.57	0.67	0.78	2.90	3.1	0.003	0.57	0.0	0.04	15.67	0.00	2.485	4.68	2.59	2.6	97.4	0.0	1.11	1.11	0.64	0.80	1.90	8697	1061	6	0	7	0	0	logfile
✔	6X4S	22042	2025-02-11	2020-05-22	3.5	3.84	—	3.9	0.007	0.77	0.0	0.05	15.59	0.00	2.077	11.03	0.97	1.9	98.1	0.0	1.34	0.72	0.75	1.39	3.9	0.003	0.70	0.0	0.04	17.85	0.00	2.290	10.65	4.85	1.5	98.5	0.0	4.13	1.86	0.72	0.76	1.13	5373	706	9	0	1	0	0	logfile
✔	7MK2	23884	2025-02-11	2021-04-21	3.8	3.60	3.84	3.6	0.004	0.69	0.0	0.04	14.23	0.00	2.228	8.87	0.00	7.7	92.3	0.0	-1.60	0.63	0.77	0.81	3.6	0.003	0.68	0.0	0.04	16.17	0.00	2.434	6.91	4.01	6.0	94.0	0.0	-0.66	2.00	0.62	0.76	0.77	5333	708	4	0	2	0	0	logfile
✔	6SHS	10204	2025-02-11	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.3	0.003	0.68	0.0	0.05	13.07	0.00	2.424	5.03	0.00	16.2	83.8	0.0	-5.61	1.16	0.68	0.64	—	7068	480	12	0	0	0	3408	logfile
✔	7ZZ5	15035	2025-02-11	2022-05-25	2.43	2.83	2.33	2.1	0.008	1.04	0.0	0.05	17.81	0.01	2.256	4.98	1.86	3.3	96.7	0.0	-1.00	0.89	0.88	3.98	2.1	0.004	0.58	0.0	0.05	17.47	0.00	2.484	8.84	2.13	3.3	96.7	0.0	0.48	0.27	0.89	0.88	3.95	3633	461	2	0	2	0	0	logfile
✔	7SF7	25076	2025-02-11	2021-10-03	2.9	2.36	—	2.2	0.005	0.78	0.0	0.05	12.92	0.00	2.234	6.27	0.56	7.5	92.5	0.0	-1.73	0.75	0.74	2.07	2.2	0.004	0.64	0.0	0.04	15.74	0.00	2.517	4.93	2.40	7.9	92.1	0.0	-0.91	0.49	0.77	0.79	1.69	6776	879	5	0	0	3	0	logfile
✔	7ZYZ	15029	2025-02-11	2022-05-25	2.47	2.56	2.40	2.2	0.007	0.87	0.0	0.05	18.66	0.01	1.973	9.47	5.45	2.8	97.2	0.0	-0.23	0.87	0.87	3.85	2.2	0.003	0.65	0.0	0.04	18.46	0.00	2.117	7.13	1.96	2.8	97.2	0.0	0.93	0.40	0.88	0.88	3.39	4349	541	2	0	2	38	0	logfile

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