Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WQi	37746	2025-02-11	2023-10-11	3.5	3.71	3.53	3.7	0.003	0.62	0.0	0.04	14.51	0.00	2.188	9.29	0.00	10.2	89.8	0.0	-1.75	0.63	0.82	1.38	3.7	0.003	0.67	0.0	0.04	16.92	0.00	2.439	11.86	2.19	9.9	90.1	0.0	-0.60	0.54	0.65	0.81	0.91	5074	644	2	0	0	0	0	logfile
✔	9iZU	61042	2025-02-12	2024-08-01	3.7	4.91	3.71	3.8	0.002	0.45	0.0	0.04	7.95	0.00	2.095	5.25	0.13	1.4	98.6	0.0	-0.47	0.51	0.15	0.72	3.9	0.004	0.83	0.0	0.05	13.67	0.01	2.546	19.17	1.70	5.6	94.4	0.0	-0.41	2.90	0.69	0.48	-0.07	7105	933	2	0	0	0	0	logfile
✔	8JF0	36205	2025-02-11	2023-05-16	3.5	3.90	3.44	3.7	0.015	1.80	0.0	0.08	12.10	0.01	2.235	9.31	0.28	6.8	93.2	0.0	-2.70	0.74	0.78	2.30	3.7	0.004	0.84	0.0	0.05	15.44	0.00	2.421	13.82	2.96	2.2	97.8	0.0	0.99	1.49	0.72	0.75	1.54	6578	872	2	0	0	0	0	logfile
✔	8QSQ	18639	2025-02-11	2023-10-11	3.7	4.53	6.42	3.8	0.002	0.46	0.0	0.04	10.95	0.00	2.268	4.09	1.15	3.2	96.8	0.0	-1.43	0.64	0.73	0.69	3.6	0.003	0.69	0.0	0.04	14.14	0.00	2.525	15.50	1.58	3.4	96.6	0.0	-0.11	2.38	0.64	0.73	0.69	6512	791	3	0	6	0	0	logfile
✔	8JPP	36486	2025-02-12	2023-06-12	3.2	3.55	3.24	3.5	0.004	0.65	0.0	0.04	15.09	0.01	2.223	8.99	0.68	4.6	95.4	0.0	-0.08	0.66	0.82	3.05	3.5	0.003	0.60	0.0	0.04	16.00	0.00	2.564	6.78	3.12	3.5	96.5	0.0	0.54	0.40	0.66	0.83	2.37	7137	922	5	0	1	0	0	logfile
✔	8GAG	29898	2025-02-12	2023-02-22	3.3	3.55	3.31	3.5	0.005	0.81	0.0	0.05	15.82	0.00	2.132	14.56	0.00	3.5	96.5	0.0	-1.79	0.63	0.68	1.54	3.5	0.003	0.62	0.0	0.04	16.79	0.00	2.432	6.89	2.17	2.8	97.2	0.0	-0.18	0.94	0.60	0.72	0.92	8469	1110	6	0	1	0	0	logfile
✔	8X8Q	38156	2025-02-11	2023-11-28	3.14	3.86	3.14	3.6	0.004	0.83	0.0	0.05	14.72	0.00	2.223	21.86	0.57	1.5	98.5	0.0	0.16	0.84	0.87	3.78	3.6	0.003	0.57	0.0	0.04	15.60	0.00	2.603	8.21	1.14	1.3	98.7	0.0	0.25	0.35	0.84	0.87	3.61	4949	622	3	0	1	0	0	logfile
✔	8WNT	37672	2025-02-12	2023-10-06	3.42	3.69	3.43	3.7	0.004	0.67	0.0	0.04	16.76	0.00	2.232	8.37	0.77	5.6	94.2	0.2	0.29	0.60	0.76	1.32	3.7	0.003	0.70	0.0	0.04	16.81	0.00	2.522	7.97	2.56	6.2	93.8	0.0	1.15	1.15	0.59	0.77	0.87	7309	933	5	0	5	0	0	logfile
✔	8ZWJ	60529	2025-02-10	2024-06-13	3.1	2.80	2.17	3.2	0.006	0.74	0.0	0.05	15.84	0.00	2.218	14.51	0.00	10.1	89.9	0.0	-4.10	0.44	0.86	4.88	3.2	0.003	0.52	0.0	0.05	15.83	0.00	2.573	3.76	3.33	8.7	91.3	0.0	-2.16	1.27	0.42	0.86	4.43	2760	378	8	6	0	0	0	logfile
✔	8SGK	40458	2025-02-12	2023-04-12	3.7	3.91	3.67	3.8	0.002	0.56	0.0	0.04	17.41	0.00	2.269	9.42	0.26	0.4	99.6	0.0	0.76	0.81	0.78	0.79	3.8	0.004	1.07	1.0	0.05	17.50	0.01	0.815	10.01	2.19	1.5	98.5	0.0	1.00	0.93	0.82	0.79	0.89	7622	986	4	0	2	0	0	logfile
✔	8T4E	41028	2025-02-12	2023-06-09	3.5	3.74	3.32	3.7	0.003	0.65	0.0	0.04	16.23	0.00	2.286	5.50	0.28	2.8	97.2	0.0	1.81	0.58	0.73	0.37	3.7	0.003	0.54	0.0	0.04	16.45	0.00	2.448	4.83	3.81	1.9	98.1	0.0	3.12	0.43	0.67	0.80	0.66	7714	1089	3	0	0	0	0	logfile
✔	9B91	44365	2025-02-12	2024-04-01	3.3	4.21	3.19	3.7	0.005	0.50	0.0	0.04	11.38	0.00	2.119	6.47	0.28	3.9	96.1	0.0	1.45	0.60	0.83	2.44	3.8	0.004	0.58	0.0	0.04	13.74	0.00	2.289	6.68	2.76	3.5	96.5	0.0	2.14	0.61	0.60	0.86	2.17	7511	993	2	0	3	0	0	logfile
✔	8CPD	16779	2025-02-12	2023-03-02	3.46	3.69	3.58	3.7	0.005	0.83	0.0	0.04	17.07	0.01	2.123	17.84	0.68	4.6	95.4	0.0	0.62	0.70	0.75	0.83	3.7	0.005	0.83	0.0	0.04	17.89	0.00	2.472	15.23	3.97	5.0	95.0	0.0	0.62	0.95	0.70	0.77	0.87	8030	994	4	0	0	0	0	logfile
✔	8XoF	38527	2025-02-12	2024-01-01	2.6	3.08	2.84	3.1	0.004	0.58	0.0	0.04	15.97	0.00	2.160	4.08	0.46	3.1	96.9	0.0	1.62	0.64	0.86	3.81	3.1	0.003	0.57	0.0	0.04	17.03	0.00	2.398	4.83	2.77	2.5	97.5	0.0	1.44	1.12	0.60	0.84	3.38	8025	1015	6	0	1	0	0	logfile
✔	8V4N	42974	2025-02-10	2023-11-29	2.43	2.63	2.50	2.6	0.002	0.49	0.0	0.04	14.21	0.00	2.260	4.14	0.93	2.3	97.7	0.0	0.80	0.31	0.85	3.24	2.6	0.002	0.54	0.0	0.04	17.77	0.00	2.652	1.71	2.80	1.9	98.1	0.0	0.88	0.99	0.31	0.87	3.51	2067	263	1	0	0	0	0	logfile
✔	8WTN	37837	2025-02-14	2023-10-19	2.95	3.11	2.91	3.1	0.006	1.15	0.0	0.05	14.11	0.01	2.256	5.10	0.00	9.0	91.0	0.0	-5.66	0.65	0.83	3.57	3.1	0.003	0.66	0.0	0.04	15.74	0.00	1.715	5.66	2.08	8.7	91.3	0.0	0.03	0.41	0.62	0.83	2.95	9714	1228	4	0	4	0	0	logfile
✔	8UL9	42357	2025-02-11	2023-10-16	3.2	3.36	3.16	3.4	0.008	1.29	0.0	0.04	19.12	0.00	2.024	6.75	2.33	4.0	96.0	0.0	2.06	0.61	0.82	1.94	3.4	0.003	0.50	0.0	0.04	16.48	0.00	2.051	7.71	2.76	4.0	95.8	0.1	2.21	1.13	0.64	0.83	1.69	6674	774	5	0	14	1	0	logfile
✔	8W6N	37329	2025-02-12	2023-08-29	3.2	3.38	3.23	3.4	0.004	0.95	0.0	0.05	13.43	0.01	2.310	3.10	0.12	7.1	92.8	0.1	-7.03	0.66	0.84	2.74	3.4	0.003	0.69	0.0	0.04	15.20	0.01	2.324	5.75	2.99	5.9	94.1	0.0	-1.52	0.47	0.67	0.86	2.34	7616	975	4	0	3	0	0	logfile
✔	8KGi	37222	2025-02-11	2023-08-19	3.2	3.65	3.28	3.6	0.003	0.67	0.0	0.04	13.82	0.00	2.303	10.16	0.00	2.1	97.9	0.0	2.76	0.52	0.73	2.71	3.6	0.004	0.72	0.0	0.04	15.77	0.00	2.474	12.16	2.91	3.7	96.3	0.0	3.00	0.42	0.52	0.75	2.31	5766	782	2	0	0	0	0	logfile
✔	8oQi	17111	2025-02-11	2023-04-12	3.1	3.09	2.34	3.3	0.013	2.01	0.0	0.11	18.29	0.01	2.465	9.18	2.63	0.0	100.0	0.0	0.22	0.51	0.84	3.31	3.3	0.006	0.62	0.0	0.05	16.91	0.00	2.633	4.14	3.68	3.1	96.9	0.0	-1.71	1.20	0.52	0.87	3.69	3810	560	10	0	0	0	0	logfile

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