Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KA2	22756	2025-02-14	2020-09-29	3.6	3.77	—	3.6	0.008	0.96	0.0	0.05	15.20	0.01	2.254	6.36	6.12	3.8	96.2	0.0	-1.99	0.87	0.83	1.20	3.6	0.003	0.71	0.0	0.04	15.70	0.00	2.540	11.35	1.89	2.8	97.2	0.0	0.92	1.24	0.87	0.84	0.66	10472	1372	4	0	0	0	0	logfile
✔	8DD7	27335	2025-02-14	2022-06-17	3.3	3.57	3.30	3.4	0.005	0.94	0.0	0.05	17.63	0.01	2.272	11.26	0.44	6.7	93.3	0.0	-2.46	0.82	0.77	1.51	3.4	0.003	0.68	0.0	0.04	17.75	0.00	2.588	10.83	2.88	5.6	94.4	0.0	0.11	0.58	0.84	0.83	1.28	10370	1275	3	0	1	0	0	logfile
✔	7RTo	24685	2025-02-11	2021-08-13	3.8	3.83	—	3.8	0.004	0.82	0.0	0.05	14.32	0.00	2.200	8.55	0.16	5.6	94.4	0.0	1.09	0.32	0.76	2.41	3.8	0.003	0.66	0.0	0.04	16.68	0.00	2.387	6.10	3.11	6.0	94.0	0.0	1.25	1.45	0.32	0.78	1.95	6607	888	3	0	0	0	0	logfile
✔	6RJD	4902	2025-02-14	2019-04-26	3.3	3.40	—	3.3	0.006	0.90	0.0	0.05	20.28	0.01	2.259	2.85	0.27	6.9	93.1	0.0	-3.53	0.65	0.83	2.84	3.3	0.003	0.58	0.0	0.04	20.53	0.00	2.516	5.42	2.71	4.4	95.6	0.0	-0.38	0.42	0.67	0.85	2.32	9332	831	4	123	0	0	0	logfile
✔	8GQY	34203	2025-02-13	2022-08-31	3.4	2.82	3.40	3.6	0.005	0.66	0.0	0.04	12.58	0.00	2.117	7.22	5.67	3.6	96.4	0.0	-7.14	0.69	0.86	3.37	3.6	0.003	0.95	1.0	0.04	15.10	0.00	2.456	5.74	3.18	1.8	98.2	0.0	-0.59	1.39	0.65	0.86	2.05	9515	1265	5	0	0	0	0	logfile
✔	7X7A	33040	2025-02-14	2022-03-09	3.2	3.65	3.23	3.6	0.002	0.49	0.0	0.04	16.63	0.00	2.134	8.04	0.00	5.1	94.8	0.2	-0.24	0.78	0.82	3.29	3.6	0.004	0.84	1.0	0.04	17.65	0.00	2.336	6.57	1.14	4.8	94.9	0.2	0.16	0.30	0.78	0.83	2.56	10278	1241	3	33	4	0	0	logfile
✔	6MET	9109	2025-02-14	2018-09-07	4.5	4.68	4.22	4.4	0.007	1.08	0.0	0.07	13.54	0.01	1.985	12.02	1.37	8.0	91.5	0.5	-4.19	0.58	0.54	—	4.4	0.003	0.79	0.0	0.05	11.13	0.00	2.377	10.84	0.00	7.2	92.7	0.1	-1.86	1.22	0.68	0.80	—	8911	1074	14	0	32	0	0	logfile
✔	8FMX	29299	2025-02-14	2022-12-26	3.37	4.30	3.60	3.9	0.005	0.93	0.0	0.06	14.52	0.01	2.404	0.43	0.00	2.6	97.4	0.0	-1.06	0.89	0.86	2.70	3.9	0.002	0.55	0.0	0.04	14.12	0.00	2.559	3.56	0.26	2.3	97.7	0.0	1.14	1.24	0.88	0.87	2.24	10329	1335	9	0	12	0	0	logfile
✔	8SEH	40411	2025-02-11	2023-04-10	2.9	2.68	2.71	3.1	0.026	2.09	10.0	0.12	10.93	0.01	2.507	0.00	0.00	7.0	93.0	0.0	-2.29	0.52	0.80	4.20	3.0	0.003	0.63	0.0	0.05	16.87	0.00	2.612	6.07	2.03	5.8	94.2	0.0	-2.98	1.28	0.44	0.81	2.61	5570	730	10	0	0	0	0	logfile
✔	7oCY	12816	2025-02-12	2021-04-28	4.25	4.55	4.29	4.4	0.003	0.62	0.0	0.04	12.49	0.00	1.980	9.97	0.00	4.9	95.1	0.0	-0.08	0.73	0.77	—	4.4	0.003	0.66	0.0	0.04	12.69	0.00	2.471	7.65	0.00	2.2	97.8	0.0	0.98	1.14	0.74	0.78	—	7994	1243	3	0	0	0	0	logfile
✔	7LRC	23494	2025-02-11	2021-02-16	2.97	4.17	2.92	3.5	0.002	0.50	0.0	0.04	8.07	0.01	1.795	5.33	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.002	0.61	0.0	0.04	11.86	0.00	2.040	5.73	0.75	0.4	99.6	0.0	3.82	1.19	0.76	0.85	3.07	6202	762	6	0	6	0	0	logfile
✔	7RTN	24684	2025-02-11	2021-08-13	3.4	3.47	—	3.5	0.004	0.63	0.0	0.04	14.58	0.00	2.298	6.03	0.00	6.1	93.9	0.0	0.60	0.31	0.74	3.40	3.5	0.004	0.61	0.0	0.04	17.08	0.00	2.551	5.42	3.24	5.6	94.4	0.0	1.13	0.37	0.31	0.79	3.03	6018	810	3	0	0	0	0	logfile
✔	7PMW	13542	2025-02-14	2021-09-03	4.1	4.24	4.05	4.1	0.002	0.47	1.0	0.04	9.25	0.00	2.047	8.47	0.91	2.8	97.2	0.0	0.56	0.58	0.75	—	4.1	0.005	0.62	0.0	0.04	11.79	0.00	2.328	8.47	0.00	5.2	94.8	0.0	0.10	1.20	0.59	0.77	—	10153	643	2	0	0	0	5123	logfile
✔	8CK0	16688	2025-02-11	2023-02-14	3.8	3.83	3.70	3.8	0.005	0.80	0.0	0.05	16.63	0.01	2.259	15.81	0.00	5.3	94.7	0.0	0.79	0.17	0.78	1.47	3.8	0.003	0.71	0.0	0.04	18.03	0.00	2.477	10.72	4.83	4.0	96.0	0.0	1.92	0.75	0.18	0.79	1.48	3762	478	1	0	0	0	0	logfile
✔	6DZY	8942	2025-02-12	2018-07-05	4.1	4.52	4.39	4.6	0.006	0.88	4.0	0.06	12.39	0.01	1.386	9.20	1.32	4.7	95.2	0.1	-2.99	0.42	0.61	—	4.5	0.003	0.80	0.0	0.05	12.93	0.00	2.481	12.16	0.00	5.7	94.2	0.1	-0.52	1.84	0.44	0.67	—	7842	988	6	0	4	0	0	logfile
✔	8DQL	27656	2025-02-11	2022-07-19	3.0	2.95	2.90	2.9	0.002	0.47	0.0	0.04	14.89	0.00	2.309	5.10	0.00	3.6	96.4	0.0	2.01	0.74	0.81	1.75	2.9	0.004	0.64	0.0	0.04	16.80	0.00	2.416	5.64	1.92	4.2	95.8	0.0	1.46	3.33	0.76	0.84	1.91	6402	771	3	0	0	0	0	logfile
✔	7FDi	31544	2025-02-11	2021-07-16	3.12	3.24	—	3.2	0.005	0.64	0.0	0.05	15.54	0.00	2.109	15.52	0.15	3.7	96.3	0.0	-0.19	0.61	0.78	3.28	3.2	0.003	0.62	0.0	0.04	15.03	0.00	2.482	8.36	1.03	2.4	97.6	0.0	1.08	1.11	0.60	0.78	2.39	6403	788	4	0	5	0	0	logfile
✔	7DCR	30640	2025-02-11	2020-10-26	3.15	3.27	—	3.2	0.005	0.89	1.0	0.06	10.49	0.01	2.260	4.10	0.63	3.0	96.7	0.3	-4.71	0.66	0.78	3.15	3.2	0.003	0.60	0.0	0.04	14.13	0.00	2.499	5.41	2.20	3.3	96.7	0.0	0.45	0.68	0.67	0.81	2.17	5653	711	2	0	0	0	0	logfile
✔	7K9X	22755	2025-02-14	2020-09-29	3.8	3.44	—	3.7	0.008	0.96	0.0	0.05	15.20	0.01	2.254	6.36	6.12	3.8	96.2	0.0	-1.99	0.79	0.81	0.97	3.7	0.003	0.69	0.0	0.04	15.68	0.00	2.540	9.83	2.79	2.6	97.4	0.0	1.17	1.18	0.78	0.81	0.66	10472	1372	4	0	0	0	0	logfile
✔	7YR7	34048	2025-02-11	2022-08-09	3.8	4.63	4.40	4.6	0.008	1.25	1.0	0.09	25.59	0.01	2.385	7.94	4.74	16.7	83.3	0.0	-5.36	0.64	0.60	0.33	4.6	0.003	0.73	0.0	0.04	25.11	0.00	2.235	11.69	4.01	17.0	83.0	0.0	-3.02	1.70	0.66	0.64	-0.96	5102	330	7	118	0	0	0	logfile

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