Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8P79	17522	2025-02-11	2023-05-30	1.7	1.76	1.73	1.8	0.014	1.73	0.0	0.08	14.30	0.01	2.251	3.34	0.90	2.1	97.7	0.2	-1.48	0.63	0.75	6.80	1.8	0.004	0.67	0.0	0.04	15.95	0.00	2.582	6.00	0.72	1.3	98.5	0.2	1.78	1.23	0.68	0.77	6.48	5256	630	6	0	1	180	0	logfile
✔	7EFC	31083	2025-02-11	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	14.88	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.005	0.82	0.0	0.05	14.74	0.00	2.549	6.44	0.27	4.4	95.6	0.0	-0.14	0.93	0.80	0.85	6.60	4004	480	8	0	4	156	0	logfile
✔	8Q98	18271	2025-02-12	2023-08-20	1.75	1.75	1.77	1.8	0.011	1.66	0.0	0.07	9.83	0.01	2.543	0.00	0.00	0.5	99.5	0.0	-0.80	0.22	0.65	8.64	1.8	0.002	0.53	0.0	0.05	15.06	0.00	2.501	1.14	0.51	0.9	99.1	0.0	-0.39	1.18	0.43	0.90	7.96	7032	450	6	0	0	0	3588	logfile
✔	7EFD	31084	2025-02-11	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.32	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.005	0.80	0.0	0.05	14.80	0.00	2.552	4.70	0.27	3.4	96.0	0.6	0.76	0.56	0.80	0.84	6.40	4004	480	8	0	4	156	0	logfile
✔	9JSV	61784	2025-02-11	2024-10-01	1.79	2.00	1.27	1.9	0.013	1.78	0.0	0.08	11.54	0.01	2.696	1.18	1.39	5.5	94.5	0.0	-0.87	0.25	0.69	8.64	1.9	0.003	0.50	0.0	0.05	12.20	0.00	2.651	2.60	0.00	4.3	95.7	0.0	-0.94	0.61	0.49	0.93	8.50	4248	272	8	0	0	0	2104	logfile
✔	9JSU	61783	2025-02-11	2024-10-01	1.79	2.07	1.34	1.9	0.012	1.70	0.0	0.07	11.86	0.01	2.673	0.50	0.00	2.8	97.2	0.0	-2.92	0.29	0.70	9.20	2.0	0.003	0.55	0.0	0.05	13.91	0.00	2.696	1.25	0.00	2.8	97.2	0.0	-3.10	1.17	0.52	0.92	8.57	4040	264	8	0	0	0	2000	logfile
✔	9JSX	61786	2025-02-11	2024-10-01	1.79	1.84	1.32	1.8	0.014	1.88	3.0	0.10	11.58	0.01	2.548	0.24	1.85	5.9	94.1	0.0	-0.91	0.22	0.58	8.50	1.8	0.003	0.53	0.0	0.05	12.47	0.00	2.679	4.26	0.00	5.5	94.5	0.0	-1.31	0.77	0.52	0.90	7.61	4248	272	8	0	0	0	2104	logfile
✔	9JST	61782	2025-02-11	2024-10-01	1.79	1.95	1.31	1.9	0.012	1.74	0.0	0.08	10.67	0.01	2.662	1.17	0.00	4.9	94.7	0.4	-1.74	0.44	0.90	8.24	1.9	0.003	0.57	0.0	0.05	12.46	0.00	2.554	0.23	1.85	5.3	94.7	0.0	-1.67	0.73	0.46	0.93	7.15	4304	280	8	0	0	0	2128	logfile
✔	8P77	17520	2025-02-11	2023-05-30	1.8	1.83	1.92	1.9	0.006	0.58	0.0	0.04	16.68	0.00	2.228	5.35	1.08	1.3	98.5	0.2	2.01	0.68	0.79	5.73	1.9	0.004	0.61	0.0	0.04	16.95	0.00	2.436	5.15	1.62	1.3	98.5	0.2	2.03	0.73	0.68	0.80	5.77	5271	630	7	0	2	137	0	logfile
✔	7QKY	14057	2025-02-11	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.1	0.003	0.67	0.0	0.05	15.29	0.00	2.460	5.02	1.52	6.5	93.5	0.0	-2.96	1.15	0.38	0.84	7.41	5760	396	6	0	0	0	2862	logfile
✔	7o6Q	12740	2025-02-12	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.003	0.50	0.0	0.04	14.60	0.00	2.589	4.19	1.25	1.2	98.8	0.0	3.33	0.37	0.90	0.90	5.78	7999	997	8	0	0	399	0	logfile
✔	8P6Y	17511	2025-02-11	2023-05-30	1.9	1.73	1.95	1.9	0.005	0.60	0.0	0.04	17.03	0.00	2.148	3.62	0.36	1.0	98.9	0.2	1.99	0.68	0.84	6.33	1.9	0.003	0.60	0.0	0.04	16.90	0.00	2.163	3.82	0.72	0.8	99.0	0.2	2.00	0.74	0.68	0.85	6.15	5266	630	7	0	3	158	0	logfile
✔	7P6A	13223	2025-02-11	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.004	0.67	0.0	0.05	14.23	0.00	2.613	4.40	0.43	4.7	95.3	0.0	-2.63	0.83	0.55	0.90	7.68	4166	540	10	0	0	76	0	logfile
✔	8P6V	17508	2025-02-11	2023-05-30	1.9	1.76	1.97	1.9	0.005	0.62	0.0	0.04	16.30	0.00	2.221	5.67	1.26	1.8	98.1	0.2	1.53	0.64	0.77	5.52	1.9	0.003	0.58	0.0	0.04	16.80	0.00	2.579	5.08	1.62	1.5	98.4	0.2	1.76	0.76	0.64	0.77	5.41	5243	630	7	0	2	138	0	logfile
✔	8P6X	17510	2025-02-11	2023-05-30	1.9	1.85	1.92	1.9	0.005	0.63	0.0	0.04	16.39	0.00	2.211	7.57	0.72	2.3	97.6	0.2	1.71	0.68	0.78	5.12	1.9	0.003	0.61	0.0	0.04	16.48	0.00	2.099	6.41	1.62	1.8	98.1	0.2	1.92	0.78	0.67	0.78	4.70	5284	631	7	0	2	144	0	logfile
✔	8oRM	17129	2025-02-11	2023-04-14	1.9	1.83	1.88	1.9	0.004	0.58	0.0	0.04	16.75	0.00	2.236	3.99	0.90	1.6	98.2	0.2	1.88	0.70	0.81	5.96	1.9	0.003	0.61	0.0	0.04	16.77	0.01	2.606	4.77	1.62	1.1	98.7	0.2	1.62	0.21	0.70	0.82	5.76	5341	632	7	0	2	210	0	logfile
✔	8PLZ	17754	2025-02-11	2023-06-27	1.9	1.74	1.98	1.9	0.005	0.77	0.0	0.05	16.79	0.01	2.212	4.12	0.90	1.6	98.2	0.2	0.88	0.63	0.80	5.76	1.9	0.003	0.65	0.0	0.04	17.07	0.00	2.579	4.31	0.72	1.5	98.4	0.2	1.67	0.35	0.62	0.80	5.42	5271	630	7	0	2	164	0	logfile
✔	9EPo	19881	2025-02-11	2024-03-19	1.9	2.08	1.97	2.1	0.005	0.86	0.0	0.06	10.14	0.01	2.140	1.04	0.00	0.3	99.7	0.0	1.04	0.41	0.58	5.97	2.1	0.004	0.63	0.0	0.04	15.94	0.00	2.561	4.23	2.55	0.6	99.4	0.0	2.18	1.64	0.67	0.83	5.40	5860	692	6	0	6	94	0	logfile
✔	8Q9F	18279	2025-02-11	2023-08-20	1.91	1.89	1.88	1.9	0.011	1.78	0.0	0.09	10.30	0.01	2.515	0.00	0.00	0.2	99.8	0.0	-2.15	0.31	0.73	7.64	1.9	0.003	0.63	0.0	0.05	16.14	0.00	2.429	2.04	0.28	2.2	97.8	0.0	-2.19	1.79	0.43	0.85	7.00	6390	414	6	0	0	0	3258	logfile
✔	7QK5	14038	2025-02-14	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.10	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.002	0.56	0.0	0.05	17.92	0.00	2.572	1.62	1.37	3.9	96.1	0.0	-1.92	1.64	0.36	0.82	6.93	10485	666	18	0	36	0	5337	logfile

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