Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SGK	40458	2025-02-12	2023-04-12	3.7	3.91	3.67	3.8	0.002	0.56	0.0	0.04	17.41	0.00	2.269	9.42	0.26	0.4	99.6	0.0	0.76	0.81	0.78	0.79	3.8	0.004	1.07	1.0	0.05	17.50	0.01	0.815	10.01	2.19	1.5	98.5	0.0	1.00	0.93	0.82	0.79	0.89	7622	986	4	0	2	0	0	logfile
✔	6VQT	21356	2025-02-14	2020-02-05	3.03	4.54	3.09	4.1	0.009	1.15	0.0	0.06	16.32	0.01	1.733	10.32	4.94	2.7	97.3	0.0	1.39	0.78	0.80	1.43	4.0	0.003	0.69	0.0	0.04	16.79	0.00	0.863	6.13	3.65	3.1	96.9	0.0	2.58	1.05	0.77	0.84	1.26	9144	1168	4	0	6	0	0	logfile
✔	8i6o	35201	2025-02-13	2023-01-29	3.8	4.30	4.03	4.2	0.003	0.66	0.0	0.04	15.30	0.00	2.135	8.12	0.61	4.3	95.7	0.0	0.14	0.74	0.81	0.86	4.2	0.004	1.04	2.0	0.04	17.66	0.01	1.002	10.04	3.59	4.6	95.3	0.1	0.45	1.19	0.72	0.81	0.69	9084	1196	5	0	0	0	0	logfile
✔	7RX0	24721	2025-02-14	2021-08-20	3.89	4.63	—	4.5	0.006	0.85	1.0	0.05	15.61	0.00	1.666	29.17	0.00	7.1	92.9	0.0	-2.61	0.60	0.82	0.77	4.5	0.004	0.91	0.0	0.05	17.17	0.01	1.018	15.41	2.93	4.5	95.5	0.0	-0.31	0.78	0.59	0.81	0.55	9673	1182	7	0	83	0	0	logfile
✔	8VB8	43116	2025-02-13	2023-12-12	3.0	3.58	2.96	3.4	0.004	0.66	0.0	0.05	21.08	0.01	2.019	7.50	4.88	5.2	94.6	0.2	-1.07	0.84	0.89	2.80	3.4	0.004	0.90	0.0	0.04	20.74	0.00	1.025	5.88	2.26	5.0	94.8	0.2	-0.07	0.30	0.83	0.89	2.63	8511	951	4	37	3	0	0	logfile
✔	8SEB	40409	2025-02-14	2023-04-08	3.24	3.49	3.29	3.4	0.005	0.58	0.0	0.04	12.08	0.00	2.213	7.32	1.74	4.4	95.5	0.1	0.67	0.65	0.72	1.85	3.4	0.003	0.64	0.0	0.04	14.64	0.00	1.041	7.84	2.22	3.9	96.0	0.2	0.47	0.56	0.72	0.80	1.98	9609	1223	4	0	1	0	0	logfile
✔	7N0C	24103	2025-02-11	2021-05-25	3.4	3.71	—	3.7	0.009	1.00	0.0	0.05	16.67	0.01	2.180	6.79	0.00	1.3	98.7	0.0	-3.80	0.72	0.80	2.48	3.7	0.006	0.66	0.0	0.04	17.16	0.00	1.050	8.35	3.25	6.3	93.7	0.0	-1.77	1.15	0.73	0.82	2.27	6088	644	6	49	7	1	0	logfile
✔	7TQD	26066	2025-02-13	2022-01-26	2.9	3.57	2.94	3.4	0.003	0.52	0.0	0.04	12.10	0.00	1.960	3.21	0.00	2.0	98.0	0.0	0.95	0.80	0.82	3.99	3.4	0.003	0.60	0.0	0.04	14.96	0.00	1.069	3.32	1.10	2.5	97.5	0.0	1.10	2.47	0.81	0.84	3.85	8690	1096	4	0	5	0	0	logfile
✔	8TJV	41312	2025-02-14	2023-07-24	2.99	3.53	2.99	3.1	0.006	0.61	0.0	0.04	24.19	0.00	1.526	10.47	0.00	0.0	0.0	0.0	—	0.91	0.89	—	3.1	0.010	0.75	0.0	0.05	23.73	0.01	1.090	11.61	0.00	0.0	0.0	0.0	—	0.98	0.92	0.93	—	8778	0	2	409	32	0	0	logfile
✔	7BSS	30165	2025-02-13	2020-03-31	3.3	3.44	—	3.4	0.010	1.23	0.0	0.07	17.07	0.01	1.849	14.06	5.60	9.0	91.0	0.0	-5.79	0.62	0.86	3.74	3.4	0.004	0.68	0.0	0.05	16.83	0.00	1.098	8.08	3.44	5.5	94.5	0.0	-1.52	1.26	0.66	0.89	3.06	9289	1140	4	0	7	0	0	logfile
✔	7RPW	24624	2025-02-14	2021-08-04	4.38	4.64	—	4.4	0.003	0.57	0.0	0.04	19.29	0.00	1.756	18.05	9.97	11.3	88.6	0.1	-2.82	0.77	0.68	—	4.4	0.003	0.69	0.0	0.04	18.74	0.00	1.101	14.79	0.00	11.2	88.7	0.1	-2.94	3.75	0.77	0.68	—	10594	1179	10	62	5	0	0	logfile
✔	7N77	24222	2025-02-12	2021-06-09	3.2	4.05	3.31	3.7	0.006	1.31	0.0	0.06	13.19	0.01	1.692	9.63	0.14	3.5	96.5	0.0	-1.56	0.64	0.74	1.92	3.7	0.002	0.89	0.0	0.04	13.74	0.00	1.125	5.19	1.41	1.6	98.4	0.0	2.15	1.62	0.68	0.82	1.13	7470	1036	2	0	4	2	0	logfile
✔	8HBH	34632	2025-02-13	2022-10-28	3.1	3.30	—	3.3	0.008	0.84	0.0	0.05	15.29	0.01	2.007	10.23	0.90	3.2	96.8	0.0	-0.10	0.68	0.78	2.79	3.3	0.003	0.58	0.0	0.04	15.73	0.00	1.129	6.98	3.25	2.5	97.5	0.0	0.98	0.31	0.72	0.82	2.59	8502	1099	4	0	5	0	0	logfile
✔	8oiF	16891	2025-02-11	2023-03-22	3.5	3.41	3.30	3.4	0.003	0.59	0.0	0.04	13.83	0.01	2.246	6.05	0.00	6.8	93.2	0.0	-0.42	0.75	0.81	3.19	3.3	0.002	0.58	0.0	0.04	14.39	0.00	1.140	5.98	2.65	5.8	94.2	0.0	-0.12	0.85	0.75	0.81	2.80	6589	934	4	0	1	0	0	logfile
✔	8AZS	15770	2025-02-13	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.67	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	2.8	0.074	7.47	388.0	0.40	33.42	0.06	1.152	629.53	23.33	39.1	24.5	36.4	-9.07	18.06	0.18	0.16	-0.06	9036	1224	36	0	0	0	0	logfile
✔	8PMQ	17764	2025-02-12	2023-06-29	3.53	3.56	3.44	3.6	0.005	0.74	0.0	0.05	14.38	0.01	2.266	6.53	0.50	5.9	94.1	0.0	0.65	0.78	0.84	1.96	3.6	0.003	0.57	0.0	0.04	15.94	0.00	1.159	5.34	2.64	4.7	95.3	0.0	1.46	1.46	0.76	0.84	1.18	7746	1007	6	0	2	0	0	logfile
✔	7XHA	33192	2025-02-14	2022-04-07	3.35	3.57	3.29	3.5	0.008	1.06	4.0	0.07	11.41	0.01	1.860	7.27	0.28	4.7	95.2	0.1	-3.53	0.69	0.78	2.40	3.5	0.003	0.64	0.0	0.04	15.33	0.00	1.181	7.47	1.67	4.1	95.9	0.0	0.87	0.61	0.71	0.81	1.82	10102	1270	5	0	3	0	0	logfile
✔	8D96	27256	2025-02-14	2022-06-09	3.35	4.21	3.32	3.9	0.002	0.58	0.0	0.04	17.81	0.00	1.836	7.87	0.11	2.5	97.3	0.2	2.00	0.89	0.85	1.96	3.8	0.004	0.54	0.0	0.04	17.79	0.00	1.224	4.07	1.79	2.5	97.3	0.2	2.16	0.40	0.91	0.89	1.91	9203	1056	6	30	4	0	0	logfile
✔	7W7T	32347	2025-02-12	2021-12-06	3.4	2.93	3.31	3.4	0.003	0.63	0.0	0.04	13.40	0.00	2.069	10.32	0.11	2.9	97.1	0.0	0.71	0.57	0.70	1.45	3.4	0.003	0.62	0.0	0.04	15.73	0.00	1.229	9.75	2.40	3.8	96.2	0.0	0.07	1.33	0.59	0.72	0.75	7903	1021	2	0	4	0	0	logfile
✔	6LN8	0927	2025-02-12	2019-12-28	3.1	3.26	3.33	3.3	0.003	0.56	0.0	0.04	12.81	0.00	2.051	6.74	0.00	3.0	97.0	0.0	-2.71	0.70	0.80	2.37	3.3	0.003	0.56	0.0	0.04	15.32	0.00	1.259	7.38	2.11	2.8	97.2	0.0	0.38	0.45	0.69	0.82	2.03	7739	1003	2	0	2	0	0	logfile

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