Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8W8A	37350	2025-02-12	2023-09-01	2.8	3.15	2.86	3.1	0.005	0.71	1.0	0.05	12.99	0.00	2.280	5.44	0.89	2.8	97.2	0.0	0.81	0.63	0.84	4.00	3.1	0.003	0.56	0.0	0.04	15.70	0.00	2.520	6.11	1.79	2.6	97.4	0.0	1.14	0.38	0.62	0.85	3.66	8260	1045	6	0	1	1	0	logfile
✔	8HGM	34742	2025-02-11	2022-11-15	3.4	4.02	3.45	3.8	0.004	0.59	0.0	0.04	13.09	0.00	2.180	7.30	0.00	4.3	95.7	0.0	0.29	0.84	0.85	2.62	3.8	0.003	0.64	0.0	0.04	14.24	0.00	2.471	5.94	1.67	3.2	96.8	0.0	0.56	0.44	0.81	0.82	2.30	4886	632	4	0	2	0	0	logfile
✔	7Y1L	33565	2025-02-13	2022-06-08	3.73	3.98	3.74	3.9	0.005	0.59	0.0	0.04	12.44	0.00	2.202	8.44	1.03	1.8	98.2	0.0	2.57	0.64	0.85	1.27	3.9	0.003	0.60	0.0	0.04	14.67	0.00	2.024	8.11	1.94	0.9	99.1	0.0	2.67	0.47	0.64	0.84	0.76	8955	1189	2	0	5	0	0	logfile
✔	8SNN	40630	2025-02-11	2023-04-27	2.32	2.53	2.32	2.5	0.003	0.64	0.0	0.04	13.12	0.00	2.208	8.84	0.00	6.0	94.0	0.0	0.03	0.66	0.84	4.32	2.5	0.003	0.59	0.0	0.04	16.30	0.00	2.300	5.81	2.85	4.5	95.5	0.0	0.37	1.33	0.70	0.88	4.20	5685	718	3	0	1	0	0	logfile
✔	8SZB	40907	2025-02-11	2023-05-29	3.07	3.36	3.01	3.5	0.003	0.51	0.0	0.03	16.77	0.00	2.154	9.22	0.37	1.5	98.5	0.0	2.06	0.49	0.73	0.50	3.5	0.003	0.57	0.0	0.04	16.71	0.00	2.377	8.44	3.33	1.5	98.5	0.0	4.22	0.94	0.51	0.79	1.48	4962	612	12	0	6	0	0	logfile
✔	8GA0	29883	2025-02-11	2023-02-22	3.5	3.76	3.70	3.7	0.004	0.84	0.0	0.05	14.18	0.01	2.274	4.15	0.00	4.8	95.2	0.0	-6.86	0.65	0.78	1.71	3.7	0.004	0.69	0.0	0.04	15.95	0.00	2.494	7.27	3.47	4.0	96.0	0.0	-2.58	0.47	0.61	0.77	1.67	6598	882	2	0	0	0	0	logfile
✔	8DE4	27384	2025-02-11	2022-06-19	2.9	3.20	2.90	3.3	0.009	0.79	0.0	0.23	18.02	0.01	2.096	10.13	4.35	3.0	97.0	0.0	0.28	0.50	0.66	1.62	3.3	0.003	0.59	0.0	0.04	16.45	0.00	2.368	9.89	5.43	6.2	93.8	0.0	-0.28	0.88	0.53	0.70	2.02	6188	767	5	0	9	0	0	logfile
✔	6N9Y	0383	2025-02-11	2018-12-04	4.0	3.80	—	3.7	0.008	1.10	0.0	0.05	10.30	0.01	2.229	4.80	0.42	9.1	90.9	0.0	-4.98	0.38	0.73	—	3.7	0.003	0.69	0.0	0.04	15.28	0.00	2.534	8.59	2.29	8.2	91.8	0.0	-0.89	1.75	0.40	0.79	—	4527	552	1	0	0	0	0	logfile
✔	7YDP	33755	2025-02-12	2022-07-04	3.1	2.36	3.18	2.1	0.005	0.73	0.0	0.05	12.57	0.00	2.123	11.85	0.00	5.2	94.8	0.0	-1.21	0.68	0.65	1.63	2.1	0.004	0.69	0.0	0.04	14.79	0.00	2.511	8.90	1.97	4.7	95.3	0.0	-0.20	0.37	0.69	0.66	1.19	8028	1022	5	0	0	0	0	logfile
✔	6QJQ	4566	2025-02-10	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.004	0.81	0.0	0.05	14.47	0.00	2.639	10.37	0.00	6.7	93.3	0.0	-3.23	2.13	0.37	0.76	1.91	1218	162	6	0	0	0	0	logfile
✔	8T6U	41081	2025-02-13	2023-06-18	3.13	3.96	3.17	3.7	0.011	1.49	0.0	0.18	15.19	0.01	2.246	4.28	0.33	2.6	97.2	0.2	-3.15	0.67	0.86	2.94	3.7	0.003	0.60	0.0	0.04	14.49	0.00	2.489	6.82	1.56	2.0	98.0	0.0	2.06	1.20	0.64	0.84	2.56	8638	1032	8	0	16	36	0	logfile
✔	8F0J	28758	2025-02-14	2022-11-03	2.0	1.77	1.94	1.9	0.005	0.61	1.0	0.05	15.42	0.00	2.246	4.03	0.40	1.1	98.9	0.0	-1.49	0.53	0.75	5.18	1.9	0.004	0.67	0.0	0.04	17.31	0.00	2.428	5.94	1.32	2.4	97.6	0.0	1.25	0.83	0.55	0.79	5.74	9678	1157	12	0	18	25	0	logfile
✔	8iPS	35642	2025-02-13	2023-03-14	3.6	3.89	3.62	3.8	0.005	0.70	0.0	0.04	18.31	0.01	2.221	8.07	0.21	7.6	92.4	0.0	0.29	0.75	0.82	1.33	3.8	0.003	0.62	0.0	0.04	18.90	0.00	2.552	4.91	3.71	6.6	93.3	0.2	1.01	1.04	0.73	0.81	1.33	9071	1161	3	0	1	0	0	logfile
✔	8WWi	37889	2025-02-13	2023-10-25	3.43	3.62	3.55	3.6	0.002	0.41	0.0	0.04	8.18	0.00	2.085	7.35	0.95	1.7	98.3	0.0	0.41	0.60	0.67	1.27	3.6	0.003	0.72	0.0	0.04	14.25	0.00	2.306	11.78	3.38	2.7	97.3	0.0	0.63	2.31	0.61	0.69	0.56	8803	1143	5	0	0	0	0	logfile
✔	8ESV	28580	2025-02-12	2022-10-14	3.3	2.37	3.29	2.0	0.006	0.71	0.0	0.04	19.21	0.01	1.929	12.92	0.00	6.7	93.1	0.2	-0.67	0.76	0.76	2.53	1.9	0.003	0.66	0.0	0.04	17.53	0.00	1.940	10.43	3.35	7.3	92.5	0.2	-0.63	0.30	0.77	0.76	2.37	7222	933	8	0	13	0	0	logfile
✔	7V4D	31708	2025-02-10	2021-08-12	3.5	3.38	—	4.0	0.003	0.54	0.0	0.05	11.89	0.00	2.234	14.44	0.00	7.1	92.9	0.0	-5.68	0.41	0.80	4.67	4.1	0.004	0.73	0.0	0.05	13.06	0.00	2.575	6.81	6.67	8.6	91.4	0.0	-3.69	1.19	0.43	0.80	4.39	2376	348	6	0	0	0	0	logfile
✔	7YMH	33928	2025-02-11	2022-07-28	3.52	3.74	3.42	3.7	0.004	0.78	0.0	0.05	13.79	0.01	2.324	3.55	0.00	4.8	95.2	0.0	-4.54	0.66	0.79	2.80	3.7	0.004	0.64	0.0	0.04	15.01	0.00	2.484	5.53	3.27	2.5	97.5	0.0	-0.22	0.51	0.67	0.80	1.77	3948	542	4	0	1	0	0	logfile
✔	8J19	35914	2025-02-13	2023-04-12	3.23	3.65	3.37	3.6	0.004	0.64	1.0	0.04	15.95	0.00	2.220	5.65	0.74	1.9	98.1	0.0	0.90	0.65	0.84	3.13	3.6	0.003	0.58	0.0	0.04	16.50	0.00	2.546	6.11	3.17	2.2	97.8	0.0	0.65	0.94	0.63	0.85	2.89	8801	1129	6	0	1	0	0	logfile
✔	8iDN	35369	2025-02-11	2023-02-13	3.35	3.49	3.33	3.4	0.003	0.58	0.0	0.05	14.93	0.00	2.120	7.91	0.56	4.4	95.4	0.2	-0.05	0.67	0.76	2.85	3.4	0.003	0.66	0.0	0.04	14.37	0.00	2.320	6.98	2.54	4.4	95.4	0.2	-0.36	0.36	0.67	0.79	2.13	3292	419	4	0	4	0	0	logfile
✔	7Y58	33612	2025-02-11	2022-06-16	3.8	4.04	3.79	4.1	0.005	0.88	3.0	0.05	18.11	0.02	2.068	14.85	3.38	10.0	90.0	0.0	-1.41	0.54	0.76	1.61	4.1	0.003	0.70	0.0	0.04	18.24	0.00	2.554	7.43	3.05	7.8	91.9	0.3	-0.06	1.03	0.59	0.80	1.15	5606	743	3	0	0	0	0	logfile

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