Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TNW	41427	2025-02-13	2023-08-02	3.17	3.12	2.81	3.2	0.005	0.80	0.0	0.06	16.69	0.01	2.170	8.67	3.90	4.4	95.6	0.0	0.74	0.58	0.85	2.05	3.2	0.003	0.58	0.0	0.04	16.52	0.00	2.601	6.01	2.45	4.2	95.8	0.0	1.16	0.30	0.56	0.86	2.39	8874	1210	4	0	2	0	0	logfile
✔	8K6M	36923	2025-02-13	2023-07-25	3.3	2.42	3.36	2.2	0.005	0.72	3.0	0.05	12.80	0.01	2.085	8.51	0.29	5.4	94.2	0.3	0.45	0.75	0.75	2.41	2.2	0.003	0.59	0.0	0.04	15.44	0.00	2.476	6.03	3.22	4.9	95.1	0.0	0.82	0.39	0.76	0.77	1.99	9327	1182	6	0	0	0	0	logfile
✔	8JXF	36699	2025-02-14	2023-06-30	3.6	2.90	3.47	3.2	0.005	0.86	0.0	0.06	19.14	0.01	2.150	9.11	1.73	5.6	94.0	0.3	-0.39	0.69	0.77	2.44	3.2	0.004	0.70	0.0	0.05	15.80	0.00	2.117	6.09	3.27	6.3	93.7	0.0	-0.34	0.37	0.71	0.79	2.26	9618	1162	11	0	57	0	0	logfile
✔	7ADM	11731	2025-02-14	2020-09-15	3.5	3.77	3.57	3.8	0.013	1.98	3.0	0.11	15.37	0.02	2.582	0.00	0.73	11.9	88.1	0.0	-2.91	0.49	0.70	2.46	3.8	0.003	0.62	0.0	0.04	16.99	0.00	2.288	6.27	1.83	8.3	91.7	0.0	-1.50	1.84	0.49	0.69	2.34	9726	614	1	0	0	0	4799	logfile
✔	6ND1	0440	2025-02-13	2018-12-13	4.1	4.15	—	4.1	0.009	1.23	14.0	0.08	16.24	0.01	2.249	7.63	0.10	3.7	96.2	0.2	-3.89	0.60	0.82	—	4.1	0.005	0.76	0.0	0.05	14.80	0.00	2.370	7.68	0.00	4.4	95.6	0.0	0.04	0.63	0.59	0.81	—	9186	1179	6	0	0	0	0	logfile
✔	6VJZ	21221	2025-02-13	2020-01-18	4.3	4.41	—	4.3	0.006	0.83	0.0	0.05	14.50	0.00	2.195	21.73	0.10	6.2	93.8	0.1	-3.21	0.64	0.79	—	4.3	0.004	0.73	0.0	0.04	14.70	0.00	2.482	12.50	0.00	5.5	94.5	0.0	0.92	1.64	0.62	0.79	—	8996	1093	4	0	0	0	0	logfile
✔	6VK0	21222	2025-02-13	2020-01-18	4.1	4.29	—	4.2	0.007	0.84	1.0	0.05	14.84	0.01	2.198	17.61	0.19	6.7	93.3	0.0	-3.49	0.60	0.78	—	4.2	0.003	0.71	0.0	0.04	14.79	0.00	2.496	9.72	0.00	4.6	95.4	0.0	0.53	0.80	0.59	0.76	—	9559	1160	4	0	0	0	0	logfile
✔	6VU8	21388	2025-02-11	2020-02-14	4.14	4.31	4.17	4.2	0.006	1.05	0.0	0.05	16.21	0.01	2.262	7.78	0.00	9.9	90.1	0.0	-4.91	0.72	0.78	—	4.2	0.003	0.78	0.0	0.04	14.89	0.00	2.299	12.29	0.36	8.2	91.8	0.0	-1.67	1.33	0.72	0.77	—	5249	669	2	0	0	0	0	logfile
✔	7BTW	30189	2025-02-14	2020-04-03	2.9	3.04	—	3.1	0.008	1.12	3.0	0.06	18.11	0.01	1.556	6.99	9.60	8.0	91.6	0.4	-5.22	0.65	0.76	3.14	3.1	0.006	0.80	0.0	0.05	18.10	0.01	2.152	8.84	3.58	8.3	91.6	0.2	-1.77	0.72	0.65	0.80	2.86	10246	1280	4	0	0	0	0	logfile
✔	7BTY	30191	2025-02-14	2020-04-03	3.2	3.16	—	3.2	0.010	1.15	2.0	0.07	15.86	0.01	2.247	5.43	0.70	10.2	89.1	0.6	-5.57	0.66	0.79	2.94	3.2	0.004	0.73	0.0	0.04	17.02	0.01	2.583	7.30	2.03	8.9	90.9	0.2	-1.94	0.50	0.70	0.81	2.53	10168	1268	4	0	0	0	0	logfile
✔	6K41	9911	2025-02-12	2019-05-23	2.9	2.88	—	2.9	0.009	1.07	0.0	0.06	10.21	0.01	2.166	3.99	0.44	5.1	94.9	0.0	-2.62	0.73	0.85	4.09	2.9	0.003	0.62	0.0	0.04	15.00	0.00	2.489	5.60	3.29	3.5	96.5	0.0	0.69	0.63	0.75	0.84	3.58	8430	1077	6	0	1	0	0	logfile
✔	8SPA	40677	2025-02-10	2023-05-02	3.0	3.73	2.75	3.7	0.006	0.75	0.0	0.04	10.82	0.00	2.614	9.26	0.00	4.3	95.7	0.0	-3.14	0.49	0.82	5.78	3.7	0.003	0.71	0.0	0.04	14.97	0.00	2.597	7.85	3.81	3.4	96.6	0.0	-2.72	1.81	0.52	0.86	5.29	1870	245	5	0	0	0	0	logfile
✔	6XWQ	10635	2025-02-13	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.75	0.0	0.04	15.58	0.00	2.550	11.84	2.19	2.6	97.4	0.0	1.23	1.16	0.72	0.84	0.43	9572	1281	6	0	0	0	0	logfile
✔	8DL8	27499	2025-02-11	2022-07-07	3.0	4.08	3.15	3.6	0.003	0.53	0.0	0.04	16.82	0.01	1.612	6.82	3.54	2.5	97.3	0.1	2.02	0.75	0.82	1.99	3.7	0.003	0.76	0.0	0.04	16.79	0.00	2.051	8.00	2.83	2.9	97.0	0.1	2.50	0.56	0.72	0.83	2.19	6208	877	5	0	2	1	0	logfile
✔	7WEF	32449	2025-02-11	2021-12-23	3.8	3.60	—	3.9	0.003	0.62	0.0	0.04	12.72	0.00	2.239	8.92	0.00	7.5	92.5	0.0	-1.27	0.53	0.76	2.61	3.8	0.003	0.63	0.0	0.04	14.64	0.00	2.524	5.69	3.63	6.3	93.7	0.0	-1.26	1.15	0.53	0.76	1.81	3328	432	3	0	0	0	0	logfile
✔	6U2K	20621	2025-02-11	2019-08-20	2.93	3.31	3.29	3.3	0.010	0.99	0.0	0.06	10.37	0.01	2.354	3.34	0.19	9.7	90.3	0.0	-4.70	0.70	0.83	4.65	3.3	0.003	0.67	0.0	0.04	14.80	0.00	2.578	5.71	1.74	7.7	92.3	0.0	-1.92	1.20	0.64	0.80	2.86	4719	604	3	0	4	0	0	logfile
✔	6HV8	0287	2025-02-13	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	8.97	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.004	0.87	0.0	0.05	12.84	0.00	2.422	13.86	0.00	13.9	86.1	0.0	-2.94	0.99	0.75	0.72	—	9206	1184	3	0	2	0	0	logfile
✔	8XML	38481	2025-02-12	2023-12-27	2.58	3.37	2.66	3.2	0.005	0.84	0.0	0.05	9.18	0.01	2.236	4.22	0.00	3.9	96.0	0.1	-2.93	0.72	0.84	4.38	3.2	0.003	0.69	0.0	0.04	14.96	0.00	2.519	7.53	2.04	2.9	97.1	0.0	0.19	0.70	0.72	0.85	3.71	8245	1071	5	0	0	0	0	logfile
✔	7U2B	26311	2025-02-12	2022-02-23	4.1	4.26	—	4.2	0.009	0.96	0.0	0.05	18.56	0.00	1.936	7.07	0.15	0.1	99.9	0.0	2.20	0.72	0.71	—	4.2	0.003	0.65	0.0	0.04	18.25	0.00	2.526	7.78	0.00	2.2	97.8	0.0	1.49	1.83	0.79	0.80	—	7316	780	5	53	2	0	0	logfile
✔	8DL6	27497	2025-02-11	2022-07-07	3.0	4.19	2.98	3.5	0.008	1.09	0.0	0.06	14.53	0.00	2.169	7.37	3.22	6.9	92.1	0.9	-0.55	0.75	0.81	1.88	3.5	0.004	0.72	0.0	0.04	14.82	0.00	2.301	5.59	1.43	5.3	94.3	0.3	1.94	0.47	0.76	0.82	1.52	6171	874	5	0	1	1	0	logfile

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