Table showing results for February 2025

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8H9K	34570	2025-02-11	2022-10-25	3.51	3.83	3.65	3.7	0.006	0.91	0.0	0.05	15.47	0.01	2.169	13.42	0.00	5.8	94.2	0.0	-2.34	0.39	0.77	1.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3381	421	3	0	0	0	0	logfile
✔	8H9R	34578	2025-02-11	2022-10-25	3.97	4.28	4.04	4.0	0.006	0.79	0.0	0.05	15.25	0.00	2.244	16.26	0.00	6.1	93.9	0.0	-1.99	0.38	0.80	0.71	4.0	0.003	0.73	0.0	0.04	17.98	0.00	2.538	10.44	1.41	3.6	96.4	0.0	2.30	1.06	0.38	0.79	0.51	3381	421	3	0	0	0	0	logfile
✔	8Do3	27589	2025-02-11	2022-07-12	3.22	3.50	3.23	3.5	0.004	0.62	0.0	0.04	13.22	0.02	2.452	6.81	0.00	2.3	97.7	0.0	2.39	0.54	0.79	2.25	3.5	0.003	0.58	0.0	0.04	14.49	0.00	2.612	7.52	1.56	2.3	97.7	0.0	2.85	1.11	0.54	0.81	1.59	4185	534	4	0	1	0	0	logfile
✔	8Gi8	40062	2025-02-12	2023-03-13	2.88	3.11	2.77	3.1	0.010	1.16	0.0	0.09	26.08	0.00	1.935	11.74	0.00	2.1	97.9	0.0	1.50	0.58	0.78	3.81	3.1	0.004	0.65	0.0	0.04	19.15	0.00	2.487	13.21	1.78	3.2	96.8	0.0	1.75	0.43	0.61	0.81	2.51	6990	720	6	0	30	45	0	logfile
✔	7ZWA	14995	2025-02-13	2022-05-19	2.8	3.47	2.87	3.3	0.003	0.51	0.0	0.04	16.75	0.00	2.220	7.51	0.00	4.3	95.7	0.0	0.85	0.77	0.85	3.12	3.3	0.004	0.63	0.0	0.04	18.58	0.00	2.463	7.29	1.39	3.5	96.5	0.0	0.83	0.39	0.78	0.86	2.91	9038	1055	6	31	1	0	0	logfile
✔	8CUD	26998	2025-02-10	2022-05-17	2.94	2.75	2.95	2.8	0.005	0.67	0.0	0.05	15.61	0.00	2.433	3.10	0.00	1.9	98.1	0.0	1.42	0.49	0.83	1.26	2.8	0.002	0.51	0.0	0.04	16.73	0.00	2.588	4.28	2.49	1.2	98.8	0.0	1.97	0.93	0.48	0.84	1.47	3294	433	2	0	0	2	0	logfile
✔	8EMV	28266	2025-02-15	2022-09-28	3.6	3.24	3.56	3.5	0.007	0.81	0.0	0.05	15.16	0.01	2.339	3.11	0.00	6.5	93.5	0.0	-4.26	0.71	0.84	2.37	3.5	0.002	0.56	0.0	0.04	16.45	0.00	2.478	3.37	1.83	3.4	96.6	0.0	-0.15	1.16	0.71	0.84	1.85	5949	747	2	0	1	0	0	logfile
✔	8CV3	27007	2025-02-10	2022-05-17	3.04	2.73	2.97	3.0	0.003	0.51	0.0	0.04	14.07	0.00	2.310	2.76	0.00	2.9	97.1	0.0	1.93	0.52	0.84	2.06	3.1	0.003	0.54	0.0	0.04	14.83	0.00	2.208	3.22	1.73	2.4	97.6	0.0	2.50	0.88	0.49	0.84	2.28	3168	416	2	0	2	0	0	logfile
✔	8CTD	26986	2025-02-10	2022-05-14	3.42	3.05	3.37	3.4	0.003	0.63	0.0	0.04	15.42	0.00	2.248	9.77	0.00	2.2	97.8	0.0	0.84	0.45	0.78	1.12	3.3	0.003	0.60	0.0	0.04	16.38	0.00	2.196	7.75	4.97	0.7	99.3	0.0	1.56	0.38	0.46	0.80	1.12	3130	411	2	0	4	0	0	logfile
✔	7UVP	26815	2025-02-11	2022-05-02	3.7	3.39	3.39	3.5	0.002	0.51	0.0	0.04	15.71	0.00	1.942	7.42	0.00	5.0	95.0	0.0	-1.10	0.61	0.77	2.40	3.5	0.004	0.61	0.0	0.05	17.73	0.00	1.835	10.25	3.75	5.0	95.0	0.0	-0.89	1.13	0.61	0.77	2.73	5671	718	2	0	2	1	0	logfile
✔	8JHY	36300	2025-02-13	2023-05-25	2.87	2.15	—	2.8	0.007	0.96	0.0	0.05	13.90	0.01	2.078	10.20	0.00	5.7	94.3	0.0	-2.25	0.75	0.77	3.68	1.9	0.003	0.64	0.0	0.04	16.00	0.00	2.513	5.49	2.13	3.8	96.2	0.0	-0.38	0.40	0.76	0.79	2.42	9073	1144	6	0	2	0	0	logfile
✔	8DNW	27582	2025-02-11	2022-07-12	3.4	3.74	3.38	3.7	0.003	0.51	0.0	0.04	12.46	0.00	1.976	5.57	0.00	1.4	98.6	0.0	2.85	0.58	0.79	1.72	3.7	0.003	0.56	0.0	0.04	14.15	0.00	2.573	5.93	1.15	1.6	98.4	0.0	3.33	1.09	0.56	0.80	1.43	4060	528	3	0	0	0	0	logfile
✔	8DNV	27581	2025-02-11	2022-07-12	3.03	3.41	3.04	3.4	0.004	0.59	0.0	0.04	11.81	0.01	2.276	7.53	0.00	2.5	97.5	0.0	1.82	0.49	0.76	3.80	3.3	0.004	0.55	0.0	0.04	13.94	0.00	2.516	5.76	0.67	2.7	97.3	0.0	2.28	0.36	0.56	0.82	3.05	4157	535	3	0	0	0	0	logfile
✔	8H9N	34574	2025-02-11	2022-10-25	3.56	3.82	3.61	3.7	0.007	0.88	0.0	0.05	15.25	0.01	2.178	14.62	0.00	5.6	94.4	0.0	-2.28	0.36	0.77	1.69	3.7	0.003	0.73	0.0	0.04	17.92	0.01	2.440	11.34	2.82	3.9	96.1	0.0	2.42	1.11	0.36	0.77	1.69	3381	421	3	0	0	0	0	logfile
✔	8SoY	40671	2025-02-14	2023-04-30	2.85	2.95	2.81	3.0	0.005	0.73	0.0	0.05	12.14	0.01	2.374	1.86	0.00	2.3	97.7	0.0	-0.69	0.70	0.82	2.95	3.0	0.003	0.54	0.0	0.04	15.30	0.00	2.610	3.11	3.30	1.7	98.3	0.0	0.36	0.28	0.69	0.82	1.57	10074	1422	6	0	0	0	0	logfile
✔	7YC8	33736	2025-02-12	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	25.12	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.82	0.0	0.04	27.70	0.01	1.970	59.75	0.00	0.0	0.0	0.0	—	1.25	0.97	0.89	—	8335	0	2	388	1	0	0	logfile
✘	7YH6	33820	2025-02-11	2022-07-12	3.4	3.90	3.35	3.7	0.005	0.64	0.0	0.05	13.19	0.00	2.161	8.14	0.00	7.1	92.7	0.2	-0.87	0.66	0.86	3.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3343	430	4	0	1	0	0	logfile
✔	7Y1F	33562	2025-02-13	2022-06-08	3.3	3.13	3.30	3.3	0.007	1.12	0.0	0.06	13.79	0.01	2.215	9.10	0.00	6.7	93.3	0.0	-2.25	0.55	0.71	3.16	3.3	0.003	0.71	0.0	0.04	15.91	0.00	2.437	11.48	3.03	5.8	94.2	0.0	-0.17	1.18	0.54	0.71	1.92	8691	1131	6	0	0	0	0	logfile
✔	7ZYG	15022	2025-02-13	2022-05-24	2.68	3.62	2.80	3.4	0.002	0.46	0.0	0.04	16.31	0.00	2.263	3.82	0.00	2.3	97.7	0.0	0.57	0.69	0.83	3.24	3.4	0.003	0.63	0.0	0.04	18.00	0.00	2.492	5.19	1.08	3.0	97.0	0.0	0.82	0.76	0.69	0.83	2.56	8914	1039	7	30	1	0	0	logfile
✔	8YRJ	39543	2025-02-11	2024-03-21	3.87	4.13	3.94	4.1	0.003	0.54	0.0	0.04	19.29	0.00	2.240	4.49	0.00	3.6	96.0	0.4	2.39	0.49	0.67	1.42	4.1	0.004	0.87	0.0	0.05	17.06	0.00	2.498	13.62	3.99	5.2	94.2	0.7	1.23	1.64	0.53	0.74	0.90	3748	454	7	0	9	0	0	logfile

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