Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TDN	41171	2025-02-11	2023-07-04	3.1	3.48	2.78	3.4	0.004	0.54	0.0	0.05	15.57	0.00	2.270	9.57	0.00	7.9	92.1	0.0	-2.86	0.59	0.86	5.30	3.4	0.006	0.62	0.0	0.05	15.74	0.00	2.640	7.77	2.03	8.8	91.2	0.0	-3.08	0.37	0.60	0.88	5.19	3620	465	5	0	0	0	0	logfile
✔	8Q9C	18276	2025-02-11	2023-08-20	3.4	3.58	3.33	3.5	0.011	1.96	1.0	0.09	9.22	0.01	2.524	0.00	0.00	5.9	94.1	0.0	-2.98	0.33	0.78	5.62	3.5	0.005	0.70	0.0	0.05	13.88	0.00	2.605	4.84	1.26	3.4	96.6	0.0	-1.90	2.73	0.34	0.85	5.52	3444	450	6	0	0	0	0	logfile
✔	8K5G	36905	2025-02-11	2023-07-21	3.41	3.86	3.38	3.7	0.003	0.65	0.0	0.04	13.67	0.00	2.235	6.18	0.00	8.0	91.8	0.2	-2.07	0.68	0.85	2.82	3.7	0.003	0.67	0.0	0.04	15.84	0.00	2.530	5.13	3.00	6.8	92.9	0.2	-1.71	1.45	0.64	0.86	2.66	3381	431	3	0	0	0	0	logfile
✔	8ENQ	28276	2025-02-11	2022-09-30	3.6	3.97	3.73	4.4	0.004	0.77	0.0	0.05	13.93	0.00	2.257	14.40	0.00	0.3	99.7	0.0	1.45	0.35	0.32	1.15	4.2	0.004	0.92	0.0	0.05	15.78	0.00	2.503	22.21	1.87	10.7	89.3	0.0	-3.91	1.95	0.47	0.52	3.27	5593	777	7	0	0	0	0	logfile
✔	8iBY	35349	2025-02-14	2023-02-10	3.47	3.81	3.66	3.7	0.003	0.62	0.0	0.03	23.52	0.01	2.187	11.40	0.00	4.6	95.3	0.1	0.06	0.77	0.76	1.66	3.7	0.002	0.60	0.0	0.04	23.54	0.00	2.196	9.46	3.43	3.8	96.1	0.1	0.34	1.60	0.76	0.77	1.56	10503	793	3	198	1	0	0	logfile
✔	8Q8Z	18266	2025-02-12	2023-08-19	3.16	3.15	3.34	3.2	0.011	1.88	0.0	0.08	10.80	0.01	2.522	0.00	0.00	4.6	95.4	0.0	-2.15	0.29	0.75	6.08	3.2	0.003	0.53	0.0	0.05	14.15	0.00	2.428	2.42	0.76	1.8	98.2	0.0	-1.76	2.95	0.32	0.85	5.36	7032	450	6	0	0	0	3588	logfile
✔	8XW2	38728	2025-02-14	2024-01-15	3.59	3.94	3.75	3.9	0.005	0.76	0.0	0.05	13.68	0.01	2.169	11.00	0.00	5.2	94.8	0.0	0.69	0.65	0.81	2.45	3.9	0.003	0.70	0.0	0.04	16.00	0.00	2.502	7.86	1.42	4.5	95.5	0.0	1.17	0.49	0.66	0.81	1.90	10150	1268	2	0	0	0	0	logfile
✔	8Q8V	18262	2025-02-12	2023-08-18	3.8	3.56	3.64	3.9	0.012	2.00	2.0	0.09	12.46	0.01	2.510	1.71	0.00	6.4	93.6	0.0	-2.75	0.30	0.69	4.41	4.0	0.003	0.68	0.0	0.05	14.58	0.00	2.404	10.82	0.76	7.3	92.7	0.0	-3.42	2.99	0.32	0.78	4.43	7032	450	6	0	0	0	3588	logfile
✔	8BG6	16024	2025-02-10	2022-10-27	4.11	4.22	3.92	4.2	0.006	0.94	0.0	0.06	12.58	0.01	2.348	6.39	0.00	6.9	93.1	0.0	-0.90	0.73	0.80	—	4.1	0.004	0.68	0.0	0.05	12.71	0.00	2.599	6.88	0.00	6.1	93.9	0.0	-0.08	0.94	0.74	0.82	—	3124	398	4	0	1	0	0	logfile
✔	8Q8U	18261	2025-02-11	2023-08-18	3.3	3.53	3.24	3.8	0.011	1.97	3.0	0.11	12.59	0.01	2.505	0.00	0.00	6.3	93.7	0.0	-3.01	0.42	0.76	3.25	3.8	0.003	0.61	0.0	0.05	13.55	0.00	2.508	3.93	0.54	4.1	95.9	0.0	-2.61	1.34	0.45	0.76	2.96	6642	426	6	0	0	0	3396	logfile
✔	8AZ7	15756	2025-02-11	2022-09-05	2.9	3.01	2.82	2.9	0.003	0.51	0.0	0.04	8.79	0.00	2.665	3.88	0.00	4.0	96.0	0.0	-3.51	0.53	0.83	4.58	2.9	0.007	0.74	0.0	0.05	12.31	0.00	2.265	4.01	1.82	8.0	92.0	0.0	-3.79	0.64	0.52	0.88	4.89	4010	540	40	0	20	0	0	logfile
✔	8AZ1	15729	2025-02-10	2022-09-05	3.1	3.21	3.04	3.5	0.004	0.58	0.0	0.04	10.90	0.00	2.374	8.00	0.00	0.0	100.0	0.0	-1.57	0.49	0.85	5.69	3.5	0.004	0.53	0.0	0.05	12.99	0.00	1.620	3.14	0.00	0.0	100.0	0.0	-2.21	0.43	0.47	0.85	5.53	1830	250	20	0	10	0	0	logfile
✔	8SEK	40419	2025-02-10	2023-04-10	3.5	3.55	3.07	3.8	0.032	2.39	0.0	0.14	10.43	0.01	2.397	1.27	0.00	20.0	80.0	0.0	-3.19	0.49	0.76	4.54	3.8	0.006	0.86	0.0	0.06	15.24	0.00	2.565	17.93	3.33	15.3	84.7	0.0	-4.53	1.27	0.40	0.74	1.67	2380	320	10	0	0	0	0	logfile
✔	8iES	35392	2025-02-12	2023-02-15	3.73	4.01	3.68	4.0	0.003	1.16	0.0	0.04	13.70	0.00	2.268	5.19	0.00	6.0	94.0	0.0	-3.84	0.60	0.66	0.28	3.9	0.003	0.99	0.0	0.04	16.19	0.00	1.870	5.87	2.39	8.5	91.5	0.0	-1.04	1.49	0.66	0.77	0.79	7965	1026	2	0	3	0	0	logfile
✔	8Q97	18270	2025-02-11	2023-08-20	2.99	3.09	2.91	3.1	0.011	2.02	0.0	0.10	12.24	0.01	2.490	0.00	0.00	0.7	99.3	0.0	-2.45	0.41	0.79	4.66	3.1	0.003	0.75	0.0	0.05	15.95	0.00	2.473	3.02	0.81	2.7	97.3	0.0	-1.44	0.92	0.39	0.82	3.52	6642	426	6	0	0	0	3396	logfile
✔	8JLF	36395	2025-02-12	2023-06-02	3.01	3.25	3.07	3.3	0.011	1.11	0.0	0.08	13.11	0.01	2.246	8.30	0.00	3.3	96.7	0.0	-0.19	0.50	0.76	2.96	3.3	0.003	0.50	0.0	0.04	14.63	0.00	2.601	7.07	1.48	2.3	97.7	0.0	0.91	0.97	0.58	0.83	2.66	8177	1012	4	0	5	0	0	logfile
✔	8iSY	35700	2025-02-12	2023-03-21	3.27	4.45	3.37	4.0	0.004	0.60	0.0	0.05	12.79	0.00	2.047	6.28	0.00	2.9	97.0	0.1	0.64	0.79	0.69	4.36	4.0	0.002	0.53	0.0	0.04	13.65	0.00	2.590	6.66	0.93	2.9	97.1	0.0	1.44	0.45	0.77	0.76	3.93	7877	957	2	0	0	0	0	logfile
✔	8X1N	37997	2025-02-11	2023-11-08	3.31	3.46	3.37	3.5	0.003	0.59	0.0	0.04	16.86	0.00	2.251	2.85	0.00	2.4	97.6	0.0	2.01	0.72	0.84	2.46	3.5	0.003	0.53	0.0	0.04	16.37	0.00	2.580	2.43	2.72	3.6	96.4	0.0	2.23	0.29	0.69	0.83	1.44	4763	591	3	0	8	0	0	logfile
✔	8J7P	36045	2025-02-10	2023-04-27	3.4	3.38	2.86	3.4	0.009	0.81	0.0	0.06	12.54	0.00	2.025	16.13	0.00	15.0	85.0	0.0	-5.75	0.35	0.87	6.32	3.5	0.004	0.66	0.0	0.05	15.12	0.00	2.550	8.75	2.65	8.8	91.2	0.0	-4.72	0.52	0.33	0.87	5.08	3258	405	3	0	0	0	0	logfile
✔	8Q99	18272	2025-02-11	2023-08-20	2.7	2.49	2.59	2.7	0.011	1.82	0.0	0.10	11.76	0.01	2.486	0.00	0.00	2.7	97.3	0.0	-2.40	0.42	0.84	5.68	2.7	0.003	0.60	0.0	0.05	14.68	0.00	2.557	1.66	1.08	0.5	99.5	0.0	-1.61	1.56	0.40	0.88	6.12	6642	426	6	0	0	0	3396	logfile

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