Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5X1G	6701	2025-02-10	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✔	5MSH	3565	2025-02-11	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.07	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.8	0.003	0.75	0.0	0.05	12.36	0.01	2.560	12.89	0.00	5.9	93.9	0.2	-0.94	1.92	0.04	0.14	—	4287	551	2	0	0	0	0	logfile
✔	5M6S	3451	2025-02-10	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.70	0.0	0.03	17.89	0.00	2.464	6.91	0.00	7.3	92.7	0.0	1.40	2.23	0.03	0.07	—	1593	98	1	0	0	0	793	logfile
✔	7UR5	26705	2025-02-11	2022-04-21	2.6	2.89	2.82	2.9	0.008	1.48	0.0	0.11	29.59	0.01	2.204	2.44	0.00	0.0	0.0	0.0	—	0.05	0.58	—	2.9	0.007	0.97	0.0	0.05	27.17	0.01	1.981	14.29	0.00	0.0	0.0	0.0	—	1.53	0.08	0.70	—	5709	0	3	270	0	0	0	logfile
✔	7URi	26713	2025-02-10	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.7	0.007	1.37	0.0	0.06	28.71	0.01	2.201	19.50	0.00	0.0	0.0	0.0	—	2.07	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	8J5Y	33733	2025-02-14	2023-04-24	3.07	3.50	3.24	20.0	0.004	0.84	0.0	0.05	13.88	0.01	2.153	12.97	0.00	6.0	93.7	0.3	-1.55	0.08	0.00	0.39	3.4	0.003	0.75	0.0	0.04	15.90	0.00	2.475	12.55	1.64	6.8	93.1	0.1	-1.29	1.35	0.12	0.06	0.57	10905	1389	4	0	0	0	0	logfile
✔	7RTM	24683	2025-02-13	2021-08-13	3.4	3.54	3.61	20.0	0.031	3.05	44.0	0.18	16.56	0.03	1.051	1.40	2.80	6.8	93.0	0.3	-1.12	0.10	0.04	0.21	3.5	0.003	0.84	0.0	0.04	16.09	0.00	2.331	10.74	2.70	4.6	95.3	0.1	-0.14	4.69	0.66	0.78	1.70	9161	1142	6	0	12	0	0	logfile
✔	9C4N	45191	2025-02-10	2024-06-04	2.9	2.74	—	3.0	0.013	1.70	0.0	0.06	9.18	0.01	2.779	0.00	0.00	14.3	85.7	0.0	-0.15	0.12	0.70	7.51	3.0	0.060	1.79	1.0	0.22	23.53	0.02	2.477	0.00	25.00	0.0	100.0	0.0	-6.32	1.38	0.19	0.79	5.31	69	9	1	0	0	0	0	logfile
✔	8G9R	29874	2025-02-11	2023-02-21	3.28	3.68	2.90	44.0	0.003	0.59	0.0	0.05	16.84	0.01	2.542	2.24	0.00	5.7	94.3	0.0	-3.38	0.13	0.07	1.03	4.2	0.004	0.79	0.0	0.05	16.51	0.01	2.512	15.96	1.54	10.1	89.9	0.0	-3.55	2.53	0.25	0.32	1.10	3570	455	5	0	0	0	0	logfile
✔	8X63	38078	2025-02-10	2023-11-20	3.2	4.09	3.72	4.5	0.006	0.77	1.0	0.05	15.29	0.01	2.411	9.43	0.81	8.0	92.0	0.0	-0.11	0.13	0.13	0.69	4.1	0.004	0.76	0.0	0.04	17.21	0.01	2.595	7.89	2.03	7.6	92.4	0.0	-0.28	0.80	0.30	0.48	1.25	2252	270	2	0	1	0	0	logfile
✔	7XoV	33360	2025-02-12	2022-05-01	3.0	3.23	3.00	6.0	0.019	1.84	0.0	0.09	10.85	0.02	2.322	6.84	0.90	3.0	96.9	0.1	0.50	0.14	0.02	0.62	3.3	0.003	0.81	0.0	0.04	15.93	0.00	2.393	9.16	2.46	3.9	96.0	0.1	0.49	2.50	0.53	0.67	1.07	8218	1036	6	0	1	1	0	logfile
✘	5M5H	4155	2025-02-10	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1086	132	1	0	0	0	0	logfile
✔	7URM	26714	2025-02-10	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.72	0.01	2.028	23.68	0.00	0.0	0.0	0.0	—	1.30	0.15	0.53	—	1905	0	1	90	0	0	0	logfile
✔	8RK9	19265	2025-02-11	2023-12-23	3.95	3.73	3.78	20.0	0.002	0.67	0.0	0.05	15.38	0.00	2.268	15.65	0.00	12.8	87.2	0.0	-3.79	0.16	0.00	1.69	7.3	0.004	0.87	0.0	0.05	17.19	0.01	2.529	18.85	2.88	11.9	88.1	0.0	-3.53	4.07	0.28	0.11	-0.96	6138	816	6	0	0	0	0	logfile
✔	8D43	27173	2025-02-12	2022-06-01	2.88	3.12	2.94	5.9	0.004	0.84	1.0	0.06	19.69	0.01	1.371	8.43	5.48	6.5	93.5	0.0	-1.48	0.17	-0.02	0.37	3.1	0.004	0.90	0.0	0.05	18.22	0.01	2.236	16.46	1.91	7.5	92.5	0.0	-1.87	2.67	0.42	0.36	1.15	7763	962	5	0	6	1	0	logfile
✔	6FU8	4319	2025-02-10	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.0	0.003	0.79	0.0	0.04	15.48	0.00	2.443	12.46	1.39	8.8	90.0	1.2	-2.70	4.01	0.25	0.69	1.62	1364	82	1	0	0	0	711	logfile
✔	8CK0	16688	2025-02-11	2023-02-14	3.8	3.83	3.70	3.8	0.005	0.80	0.0	0.05	16.63	0.01	2.259	15.81	0.00	5.3	94.7	0.0	0.79	0.17	0.78	1.47	3.8	0.003	0.71	0.0	0.04	18.03	0.00	2.477	10.72	4.83	4.0	96.0	0.0	1.92	0.75	0.18	0.79	1.48	3762	478	1	0	0	0	0	logfile
✔	8SZ7	40902	2025-02-11	2023-05-27	2.84	3.08	2.87	3.6	0.003	0.46	0.0	0.04	9.67	0.00	2.393	1.99	0.00	0.9	99.1	0.0	1.11	0.17	0.20	2.22	3.2	0.005	0.72	0.0	0.04	12.89	0.00	2.460	4.23	1.36	3.4	96.6	0.0	1.82	1.13	0.44	0.68	1.14	4026	240	1	0	0	0	2021	logfile
✔	8X7Q	38107	2025-02-11	2023-11-24	2.7	2.32	2.42	3.3	0.014	1.60	0.0	0.08	14.72	0.01	2.275	17.91	0.00	9.4	90.6	0.0	-4.07	0.18	0.24	0.92	3.0	0.003	0.72	0.0	0.05	17.93	0.00	2.615	10.27	5.79	4.2	95.8	0.0	-3.46	2.16	0.49	0.86	2.95	3936	550	14	0	4	0	0	logfile
✔	8UPY	42457	2025-02-10	2023-10-23	2.8	3.43	3.00	2.9	0.012	1.65	0.0	0.12	28.73	0.01	1.040	88.62	0.00	0.0	0.0	0.0	—	0.18	0.52	—	2.9	0.006	0.78	0.0	0.04	27.61	0.01	2.038	25.14	0.00	0.0	0.0	0.0	—	1.07	0.22	0.75	—	1532	0	1	72	0	0	0	logfile

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