Table showing results for February 2025

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ViB	43256	2025-02-11	2024-01-03	4.6	7.58	4.37	4.4	0.009	1.12	1.0	0.07	5.12	0.00	2.305	5.79	0.00	5.6	93.5	0.9	-0.39	0.40	0.54	—	4.4	0.003	0.76	0.0	0.04	5.70	0.00	2.472	5.79	0.00	10.6	89.0	0.5	-1.94	3.62	0.49	0.74	—	4421	888	6	0	7	0	0	logfile
✔	9JA6	61291	2025-02-11	2024-08-24	4.4	3.40	4.33	5.3	0.008	0.94	0.0	0.04	16.51	0.00	2.211	19.59	9.56	2.8	97.2	0.0	-1.98	0.69	0.60	—	5.3	0.002	0.61	0.0	0.04	12.99	0.00	2.394	7.46	0.00	0.7	99.3	0.0	3.13	1.55	0.71	0.76	—	4880	588	4	0	0	0	0	logfile
✔	8GH1	40028	2025-02-10	2023-03-08	4.1	4.27	4.19	4.3	0.004	0.57	0.0	0.04	12.64	0.00	2.249	3.87	0.00	3.2	96.8	0.0	1.62	0.52	0.78	—	4.2	0.004	0.65	0.0	0.04	12.09	0.00	2.609	4.42	0.00	3.2	96.8	0.0	1.59	0.41	0.52	0.80	—	1976	281	2	0	1	0	0	logfile
✔	8KGL	37225	2025-02-12	2023-08-19	4.3	4.47	4.30	4.3	0.007	1.06	0.0	0.05	9.44	0.01	2.276	8.04	0.00	7.9	92.1	0.0	-3.21	0.81	0.76	—	4.3	0.002	0.61	0.0	0.04	11.46	0.00	2.417	9.22	0.00	4.7	95.3	0.0	0.18	0.92	0.81	0.76	—	8084	984	2	0	0	0	0	logfile
✔	8Q5H	18179	2025-02-14	2023-08-09	4.5	4.83	4.50	4.3	0.004	0.82	0.0	0.04	15.49	0.01	2.072	15.56	0.00	3.5	96.5	0.1	0.62	0.66	0.45	—	4.3	0.003	0.77	0.0	0.04	15.54	0.00	2.372	16.29	0.00	3.5	96.4	0.1	0.53	1.87	0.76	0.67	—	9574	1173	7	0	0	0	0	logfile
✔	8W5J	37294	2025-02-12	2023-08-27	4.4	4.87	4.36	4.4	0.002	0.63	0.0	0.04	12.49	0.01	2.174	13.63	0.00	2.1	97.9	0.0	1.07	0.56	0.79	—	4.4	0.006	0.75	0.0	0.04	13.15	0.00	2.391	16.17	0.00	3.5	96.5	0.0	0.54	0.46	0.57	0.81	—	7356	942	11	0	1	0	0	logfile
✔	8GEi	29971	2025-02-11	2023-03-06	4.1	4.35	4.10	4.2	0.003	0.54	0.0	0.04	10.59	0.00	2.226	4.55	0.00	3.1	96.9	0.0	1.03	0.71	0.79	—	4.2	0.003	0.53	0.0	0.04	9.30	0.00	2.601	4.89	0.00	4.0	96.0	0.0	0.94	1.13	0.71	0.80	—	5452	934	5	0	1	0	0	logfile
✔	8oWJ	17238	2025-02-10	2023-04-28	3.75	3.75	3.51	4.1	0.012	2.26	0.0	0.11	15.84	0.02	2.610	8.57	3.57	0.0	100.0	0.0	-1.73	0.45	0.61	2.82	4.2	0.005	0.93	0.0	0.05	16.20	0.00	2.567	19.18	0.00	10.3	89.7	0.0	-3.29	2.64	0.49	0.72	3.31	2720	360	10	0	0	0	0	logfile
✔	8GEJ	29972	2025-02-11	2023-03-06	4.2	4.48	4.17	4.2	0.004	0.50	0.0	0.04	8.38	0.00	2.210	6.00	0.00	3.2	96.8	0.0	1.24	0.71	0.79	—	4.2	0.003	0.48	0.0	0.04	8.59	0.00	2.612	3.00	0.00	3.9	96.1	0.0	0.60	1.10	0.71	0.79	—	5436	950	5	0	1	0	0	logfile
✔	9B33	44124	2025-02-11	2024-03-18	4.07	4.25	4.00	4.2	0.007	1.56	0.0	0.08	13.12	0.01	2.141	8.98	0.49	23.2	75.3	1.5	-6.09	0.63	0.62	—	4.1	0.004	1.02	0.0	0.06	12.59	0.01	1.977	22.31	0.00	22.6	76.4	1.1	-4.71	1.20	0.68	0.68	—	3619	474	4	0	4	0	0	logfile
✔	8QXA	18716	2025-02-11	2023-10-24	4.05	3.51	3.78	4.2	0.014	2.24	0.0	0.10	18.94	0.01	2.420	4.19	0.00	3.5	96.5	0.0	-4.36	0.51	0.75	—	4.2	0.005	0.84	0.0	0.04	14.48	0.00	2.551	18.46	0.00	10.1	89.9	0.0	-4.38	1.41	0.48	0.76	—	3696	540	12	0	0	0	0	logfile
✔	8i9Q	35280	2025-02-11	2023-02-07	4.22	4.44	4.10	4.3	0.007	0.98	1.0	0.05	14.66	0.01	1.697	22.61	0.86	11.5	88.5	0.0	-3.94	0.49	0.68	—	4.3	0.003	0.76	0.0	0.04	14.30	0.00	2.503	10.74	0.00	9.1	90.9	0.0	-1.26	1.39	0.46	0.59	—	5179	675	2	0	0	0	0	logfile
✔	8UPT	42455	2025-02-10	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.72	0.0	0.04	27.67	0.01	2.087	17.90	0.00	0.0	0.0	0.0	—	1.00	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	8T53	41042	2025-02-11	2023-06-12	4.1	4.29	4.68	4.1	0.002	0.59	0.0	0.04	12.60	0.00	2.201	11.96	0.00	1.8	98.2	0.0	0.81	0.45	0.45	—	4.1	0.003	0.64	0.0	0.04	13.49	0.00	2.448	13.53	0.00	3.4	96.6	0.0	1.21	0.61	0.46	0.47	—	6660	796	2	0	0	0	0	logfile
✔	8JTS	36651	2025-02-10	2023-06-22	4.14	4.41	3.90	4.4	0.008	0.93	0.0	0.05	14.11	0.02	2.249	8.90	0.31	5.0	95.0	0.0	-0.32	0.53	0.67	—	4.4	0.003	0.69	0.0	0.04	14.24	0.00	2.485	8.59	0.00	5.0	95.0	0.0	1.10	1.15	0.54	0.67	—	3330	461	2	0	1	0	0	logfile
✔	8U1D	41810	2025-02-11	2023-08-31	4.25	4.46	4.28	4.4	0.006	1.05	0.0	0.06	13.61	0.01	2.280	9.04	0.52	7.9	91.7	0.3	-2.32	0.68	0.73	—	4.4	0.003	0.66	0.0	0.04	13.23	0.00	2.530	7.65	0.00	4.8	95.0	0.2	-1.32	1.63	0.71	0.75	—	5109	650	4	0	1	0	0	logfile
✔	8C89	16473	2025-02-11	2023-01-19	4.41	3.51	3.83	2.2	0.007	1.10	0.0	0.09	14.36	0.01	2.149	25.75	0.71	10.4	89.3	0.3	-2.47	0.75	0.77	—	2.2	0.005	0.84	0.0	0.05	13.64	0.01	2.471	27.53	0.00	11.6	88.4	0.0	-1.81	0.56	0.70	0.65	—	5106	652	5	0	4	0	0	logfile
✔	8AWT	15696	2025-02-10	2022-08-30	3.0	3.11	2.92	3.1	0.003	0.47	0.0	0.04	9.30	0.00	2.671	4.07	0.00	0.0	100.0	0.0	-4.11	0.52	0.86	6.78	3.1	0.003	0.50	0.0	0.04	10.36	0.00	2.302	0.00	0.00	0.4	99.6	0.0	-4.02	1.02	0.53	0.89	7.01	1910	260	20	0	10	0	0	logfile
✔	9C58	45207	2025-02-12	2024-06-06	4.7	4.87	4.69	4.8	0.003	0.73	0.0	0.05	10.28	0.00	1.776	1.47	0.00	2.9	97.1	0.0	0.63	0.70	0.62	—	4.7	0.005	0.76	0.0	0.04	6.86	0.00	1.906	3.11	0.00	8.4	91.6	0.0	-1.17	1.56	0.76	0.73	—	7954	1590	6	0	2	0	0	logfile
✔	8YC0	39128	2025-02-11	2024-02-17	4.12	4.24	3.86	4.2	0.004	0.77	0.0	0.04	17.51	0.00	2.114	14.18	0.58	7.6	92.4	0.0	-0.95	0.50	0.65	—	4.2	0.003	0.76	0.0	0.04	13.94	0.00	2.465	10.53	0.00	7.4	92.6	0.0	-0.63	1.35	0.60	0.71	—	4635	583	9	0	1	0	0	logfile

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