Table showing results for February 2025

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9C58	45207	2025-02-12	2024-06-06	4.7	4.87	4.69	4.8	0.003	0.73	0.0	0.05	10.28	0.00	1.776	1.47	0.00	2.9	97.1	0.0	0.63	0.70	0.62	—	4.7	0.005	0.76	0.0	0.04	6.86	0.00	1.906	3.11	0.00	8.4	91.6	0.0	-1.17	1.56	0.76	0.73	—	7954	1590	6	0	2	0	0	logfile
✔	8T53	41042	2025-02-11	2023-06-12	4.1	4.29	4.68	4.1	0.002	0.59	0.0	0.04	12.60	0.00	2.201	11.96	0.00	1.8	98.2	0.0	0.81	0.45	0.45	—	4.1	0.003	0.64	0.0	0.04	13.49	0.00	2.448	13.53	0.00	3.4	96.6	0.0	1.21	0.61	0.46	0.47	—	6660	796	2	0	0	0	0	logfile
✔	8C89	16473	2025-02-11	2023-01-19	4.41	3.51	3.83	2.2	0.007	1.10	0.0	0.09	14.36	0.01	2.149	25.75	0.71	10.4	89.3	0.3	-2.47	0.75	0.77	—	2.2	0.005	0.84	0.0	0.05	13.64	0.01	2.471	27.53	0.00	11.6	88.4	0.0	-1.81	0.56	0.70	0.65	—	5106	652	5	0	4	0	0	logfile
✔	8UPT	42455	2025-02-10	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.72	0.0	0.04	27.67	0.01	2.087	17.90	0.00	0.0	0.0	0.0	—	1.00	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	9B33	44124	2025-02-11	2024-03-18	4.07	4.25	4.00	4.2	0.007	1.56	0.0	0.08	13.12	0.01	2.141	8.98	0.49	23.2	75.3	1.5	-6.09	0.63	0.62	—	4.1	0.004	1.02	0.0	0.06	12.59	0.01	1.977	22.31	0.00	22.6	76.4	1.1	-4.71	1.20	0.68	0.68	—	3619	474	4	0	4	0	0	logfile
✔	8U1D	41810	2025-02-11	2023-08-31	4.25	4.46	4.28	4.4	0.006	1.05	0.0	0.06	13.61	0.01	2.280	9.04	0.52	7.9	91.7	0.3	-2.32	0.68	0.73	—	4.4	0.003	0.66	0.0	0.04	13.23	0.00	2.530	7.65	0.00	4.8	95.0	0.2	-1.32	1.63	0.71	0.75	—	5109	650	4	0	1	0	0	logfile
✔	8JTS	36651	2025-02-10	2023-06-22	4.14	4.41	3.90	4.4	0.008	0.93	0.0	0.05	14.11	0.02	2.249	8.90	0.31	5.0	95.0	0.0	-0.32	0.53	0.67	—	4.4	0.003	0.69	0.0	0.04	14.24	0.00	2.485	8.59	0.00	5.0	95.0	0.0	1.10	1.15	0.54	0.67	—	3330	461	2	0	1	0	0	logfile
✔	8Q5H	18179	2025-02-14	2023-08-09	4.5	4.83	4.50	4.3	0.004	0.82	0.0	0.04	15.49	0.01	2.072	15.56	0.00	3.5	96.5	0.1	0.62	0.66	0.45	—	4.3	0.003	0.77	0.0	0.04	15.54	0.00	2.372	16.29	0.00	3.5	96.4	0.1	0.53	1.87	0.76	0.67	—	9574	1173	7	0	0	0	0	logfile
✔	8i9Q	35280	2025-02-11	2023-02-07	4.22	4.44	4.10	4.3	0.007	0.98	1.0	0.05	14.66	0.01	1.697	22.61	0.86	11.5	88.5	0.0	-3.94	0.49	0.68	—	4.3	0.003	0.76	0.0	0.04	14.30	0.00	2.503	10.74	0.00	9.1	90.9	0.0	-1.26	1.39	0.46	0.59	—	5179	675	2	0	0	0	0	logfile
✔	8PoG	17791	2025-02-11	2023-07-04	4.15	4.36	4.10	4.3	0.003	0.59	0.0	0.04	15.83	0.01	2.242	5.44	0.00	2.3	97.7	0.0	0.40	0.77	0.80	—	4.3	0.004	0.61	0.0	0.04	16.46	0.00	2.569	5.64	0.00	2.8	97.2	0.0	1.95	1.94	0.77	0.80	—	4964	624	4	0	0	0	0	logfile
✔	8TJX	41313	2025-02-12	2023-07-24	2.44	3.10	2.65	2.9	0.006	0.64	0.0	0.04	24.81	0.01	1.872	12.24	0.00	0.0	0.0	0.0	—	0.85	0.85	—	2.9	0.007	0.63	0.0	0.04	23.99	0.01	1.833	9.77	0.00	0.0	0.0	0.0	—	0.82	0.84	0.86	—	7839	0	2	365	27	0	0	logfile
✔	8H5B	34490	2025-02-13	2022-10-12	4.03	4.23	3.98	4.1	0.005	0.74	0.0	0.04	12.98	0.01	1.882	23.17	0.00	4.5	95.5	0.0	-1.67	0.79	0.73	—	4.1	0.003	0.71	0.0	0.04	13.47	0.00	2.420	16.01	0.00	3.2	96.8	0.0	0.37	1.34	0.78	0.73	—	8570	1075	2	0	0	0	0	logfile
✔	8TJU	41311	2025-02-14	2023-07-24	3.46	4.75	3.48	3.4	0.006	0.67	0.0	0.04	25.59	0.01	1.874	27.33	0.00	0.0	0.0	0.0	—	0.93	0.86	—	3.4	0.008	0.71	0.0	0.04	24.83	0.01	1.789	23.91	0.00	0.0	0.0	0.0	—	0.46	0.94	0.91	—	8771	0	2	409	27	0	0	logfile
✔	8TA6	41130	2025-02-10	2023-06-26	4.03	4.31	5.52	4.2	0.013	1.99	1.0	0.10	15.10	0.01	2.524	0.91	2.10	9.4	90.2	0.4	-2.23	0.44	0.72	—	4.2	0.004	0.76	0.0	0.05	14.19	0.00	2.498	10.67	0.00	5.6	94.4	0.0	-1.64	1.68	0.45	0.69	—	2158	274	2	0	0	0	0	logfile
✔	8TJV	41312	2025-02-14	2023-07-24	2.99	3.53	2.99	3.1	0.006	0.61	0.0	0.04	24.19	0.00	1.526	10.47	0.00	0.0	0.0	0.0	—	0.91	0.89	—	3.1	0.010	0.75	0.0	0.05	23.73	0.01	1.090	11.61	0.00	0.0	0.0	0.0	—	0.98	0.92	0.93	—	8778	0	2	409	32	0	0	logfile
✔	8AWT	15696	2025-02-10	2022-08-30	3.0	3.11	2.92	3.1	0.003	0.47	0.0	0.04	9.30	0.00	2.671	4.07	0.00	0.0	100.0	0.0	-4.11	0.52	0.86	6.78	3.1	0.003	0.50	0.0	0.04	10.36	0.00	2.302	0.00	0.00	0.4	99.6	0.0	-4.02	1.02	0.53	0.89	7.01	1910	260	20	0	10	0	0	logfile
✔	8QXA	18716	2025-02-11	2023-10-24	4.05	3.51	3.78	4.2	0.014	2.24	0.0	0.10	18.94	0.01	2.420	4.19	0.00	3.5	96.5	0.0	-4.36	0.51	0.75	—	4.2	0.005	0.84	0.0	0.04	14.48	0.00	2.551	18.46	0.00	10.1	89.9	0.0	-4.38	1.41	0.48	0.76	—	3696	540	12	0	0	0	0	logfile
✔	8GF7	29980	2025-02-11	2023-03-07	4.8	3.61	4.18	4.4	0.003	0.68	0.0	0.06	10.15	0.00	1.681	53.15	0.00	10.2	89.8	0.0	-4.11	0.33	0.53	—	4.4	0.004	1.09	0.0	0.06	14.25	0.00	2.235	20.67	0.00	18.2	81.8	0.0	-3.90	2.19	0.34	0.57	—	3774	540	12	0	6	0	0	logfile
✔	8FTK	29439	2025-02-12	2023-01-12	4.56	5.56	4.86	4.4	0.002	0.58	0.0	0.04	4.66	0.00	2.125	4.21	0.00	5.9	94.1	0.0	0.74	0.85	0.81	—	4.4	0.004	0.60	0.0	0.04	4.95	0.00	2.287	2.98	0.00	8.8	91.2	0.0	-0.04	1.28	0.86	0.83	—	7840	1584	1	0	0	0	0	logfile
✔	8oWJ	17238	2025-02-10	2023-04-28	3.75	3.75	3.51	4.1	0.012	2.26	0.0	0.11	15.84	0.02	2.610	8.57	3.57	0.0	100.0	0.0	-1.73	0.45	0.61	2.82	4.2	0.005	0.93	0.0	0.05	16.20	0.00	2.567	19.18	0.00	10.3	89.7	0.0	-3.29	2.64	0.49	0.72	3.31	2720	360	10	0	0	0	0	logfile

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