Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oKR	16930	2025-02-10	2023-03-29	2.86	3.36	2.66	3.4	0.007	1.56	0.0	0.09	22.91	0.01	1.489	4.96	0.00	0.0	100.0	0.0	-4.51	0.55	0.67	7.31	3.4	0.190	6.47	65.0	0.43	30.03	0.04	1.660	149.52	13.10	46.7	41.7	11.7	-7.76	2.19	0.64	0.89	1.68	1608	168	24	0	0	0	0	logfile
✔	8AZ1	15729	2025-02-10	2022-09-05	3.1	3.21	3.04	3.5	0.004	0.58	0.0	0.04	10.90	0.00	2.374	8.00	0.00	0.0	100.0	0.0	-1.57	0.49	0.85	5.69	3.5	0.004	0.53	0.0	0.05	12.99	0.00	1.620	3.14	0.00	0.0	100.0	0.0	-2.21	0.43	0.47	0.85	5.53	1830	250	20	0	10	0	0	logfile
✔	7RX5	24725	2025-02-13	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.32	0.0	0.03	12.78	0.00	2.693	2.28	0.00	0.0	100.0	0.0	5.58	0.18	0.70	0.87	2.85	9120	1160	40	0	0	0	0	logfile
✔	7LQi	23487	2025-02-12	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.76	0.0	0.14	23.86	0.01	2.040	117.72	20.50	25.8	74.2	0.0	-5.05	1.41	0.64	0.85	3.63	8400	800	100	0	0	0	0	logfile
✔	8TJQ	41308	2025-02-13	2023-07-24	3.4	4.09	3.45	3.4	0.005	0.63	0.0	0.03	24.84	0.00	1.883	19.77	0.00	0.0	0.0	0.0	—	0.90	0.85	—	3.4	0.009	0.78	0.0	0.04	24.52	0.01	1.771	21.71	0.00	0.0	0.0	0.0	—	0.17	0.92	0.90	—	9296	0	2	433	28	0	0	logfile
✔	8AZ3	15731	2025-02-11	2022-09-05	3.4	2.64	3.43	3.6	0.005	0.66	0.0	0.06	9.60	0.00	2.509	6.87	0.00	0.0	100.0	0.0	-2.88	0.47	0.83	5.76	3.6	0.003	0.56	0.0	0.04	11.93	0.00	2.110	4.07	1.82	3.0	97.0	0.0	-4.51	0.60	0.48	0.85	6.24	4040	540	40	0	20	0	0	logfile
✔	7LQE	23483	2025-02-11	2021-02-13	3.4	3.06	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.423	23.27	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.149	5.03	242.0	0.38	26.24	0.02	1.718	134.18	25.00	31.6	68.1	0.3	-7.42	1.54	0.65	0.90	1.83	6048	576	72	0	0	0	0	logfile
✔	8A4L	15148	2025-02-12	2022-06-12	2.68	2.73	1.77	2.8	0.004	0.65	0.0	0.05	13.43	0.00	2.385	10.11	0.00	0.0	100.0	0.0	-3.33	0.52	0.85	5.71	2.8	0.005	0.62	0.0	0.05	17.41	0.00	2.584	8.47	4.10	3.3	96.7	0.0	-3.64	1.16	0.53	0.87	5.69	7755	1125	15	0	0	0	0	logfile
✔	8EHR	28150	2025-02-12	2022-09-14	3.2	2.95	3.03	3.1	0.003	0.55	0.0	0.05	13.08	0.00	2.374	2.29	0.00	0.0	100.0	0.0	1.82	0.58	0.85	3.24	3.1	0.003	0.53	0.0	0.04	15.72	0.00	2.539	3.44	2.56	0.8	99.2	0.0	1.11	1.16	0.58	0.87	3.51	7350	1022	7	0	0	0	0	logfile
✔	6A7F	6993	2025-02-14	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.004	0.73	0.0	0.05	17.73	0.00	2.431	14.38	2.85	0.4	99.6	0.0	2.09	2.04	0.60	0.87	0.03	10830	1410	30	0	0	0	0	logfile
✔	6PoM	20416	2025-02-11	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	25.63	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.006	0.94	0.0	0.05	26.62	0.01	1.998	32.05	0.00	0.0	0.0	0.0	—	1.73	0.75	0.79	—	4937	0	2	230	0	0	0	logfile
✔	8oT1	17166	2025-02-10	2023-04-20	2.59	3.30	2.25	3.4	0.013	2.40	0.0	0.13	17.35	0.01	2.477	0.00	0.00	0.0	100.0	0.0	-3.37	0.47	0.69	6.48	3.3	0.006	0.84	0.0	0.05	17.11	0.00	2.616	13.69	3.97	6.4	93.6	0.0	-2.10	1.53	0.39	0.74	5.01	2460	336	12	0	0	0	0	logfile
✔	8BFB	16019	2025-02-10	2022-10-24	3.2	3.13	3.01	3.2	0.003	0.44	0.0	0.06	13.91	0.00	2.552	9.16	0.00	0.0	100.0	0.0	-3.20	0.49	0.83	5.20	3.2	0.005	0.53	0.0	0.05	17.31	0.00	2.629	5.21	1.43	1.4	98.6	0.0	-2.95	1.02	0.51	0.86	6.78	2860	380	10	0	0	0	0	logfile
✔	8UPY	42457	2025-02-10	2023-10-23	2.8	3.43	3.00	2.9	0.012	1.65	0.0	0.12	28.73	0.01	1.040	88.62	0.00	0.0	0.0	0.0	—	0.18	0.52	—	2.9	0.006	0.78	0.0	0.04	27.61	0.01	2.038	25.14	0.00	0.0	0.0	0.0	—	1.07	0.22	0.75	—	1532	0	1	72	0	0	0	logfile
✔	8BFA	16018	2025-02-10	2022-10-24	3.0	3.05	3.02	3.3	0.002	0.39	0.0	0.05	13.94	0.00	2.592	6.46	0.00	0.0	100.0	0.0	-3.13	0.47	0.82	5.29	3.2	0.005	0.52	0.0	0.05	17.06	0.00	2.590	6.28	1.79	3.1	96.9	0.0	-2.30	1.02	0.52	0.88	6.77	2860	380	10	0	0	0	0	logfile
✔	7LQF	23484	2025-02-11	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.154	6.31	245.0	0.42	26.85	0.03	1.673	200.95	26.56	55.5	42.6	2.0	-9.07	2.04	0.69	0.87	3.17	5376	512	64	0	0	0	0	logfile
✔	8B3A	15824	2025-02-10	2022-09-16	3.8	3.66	2.91	4.1	0.010	1.90	0.0	0.10	27.06	0.10	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.080	5.89	22.0	0.41	23.11	0.05	1.857	277.96	47.62	64.0	4.7	31.3	-10.73	2.44	0.38	0.50	2.70	2010	210	60	0	60	0	0	logfile
✔	7Q66	13853	2025-02-11	2021-11-05	2.79	2.87	2.63	2.9	0.021	1.42	0.0	0.11	12.58	0.01	2.277	13.59	6.52	0.0	100.0	0.0	-4.18	0.63	0.84	3.82	2.9	0.006	0.80	0.0	0.05	16.31	0.00	2.448	12.40	11.26	0.8	99.2	0.0	-4.12	0.64	0.62	0.88	4.03	4807	682	22	0	0	0	0	logfile
✔	7UUQ	26800	2025-02-11	2022-04-28	3.1	3.45	2.98	3.3	0.018	1.82	0.0	0.06	18.29	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.117	4.43	10.0	0.23	30.63	0.02	1.884	46.76	13.19	67.9	30.4	1.8	-10.54	0.66	0.73	0.90	4.29	4760	364	98	0	98	0	0	logfile
✔	8oL3	16944	2025-02-11	2023-03-30	3.5	3.67	1.73	4.2	0.009	0.67	0.0	0.06	9.52	0.01	2.263	7.26	0.00	0.0	100.0	0.0	-0.18	0.42	0.77	3.49	4.2	0.003	0.48	0.0	0.06	16.21	0.00	2.589	11.90	2.80	9.0	91.0	0.0	-0.92	0.93	0.33	0.69	4.73	4970	330	10	0	0	0	2500	logfile

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