Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R6M	24282	2025-02-12	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	25.58	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.87	0.0	0.04	25.54	0.01	1.758	13.81	0.00	0.0	0.0	0.0	—	0.17	0.55	0.73	—	7755	0	3	362	13	0	0	logfile
✔	6oG3	20051	2025-02-10	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.005	1.08	0.0	0.00	7.76	0.00	2.614	47.39	0.00	10.9	89.1	0.0	-1.22	2.12	0.67	0.87	—	1215	396	4	0	9	0	0	logfile
✔	9H1P	51769	2025-02-14	2024-10-10	3.1	3.40	3.10	3.4	0.004	0.67	0.0	0.04	13.91	0.01	2.482	1.72	0.00	0.0	100.0	0.0	-1.00	0.50	0.78	4.07	3.4	0.003	0.47	0.0	0.04	14.86	0.00	2.659	2.51	1.13	0.3	99.7	0.0	1.41	0.42	0.43	0.74	3.09	10668	1332	24	0	0	0	0	logfile
✔	9CXF	45988	2025-02-11	2024-07-31	3.02	3.58	3.03	3.3	0.006	0.68	0.0	0.04	25.40	0.00	1.874	7.88	0.00	0.0	0.0	0.0	—	0.92	0.90	—	3.3	0.008	0.72	0.0	0.04	24.51	0.00	1.792	5.56	0.00	0.0	0.0	0.0	—	0.38	0.93	0.92	—	4318	0	2	200	22	0	0	logfile
✔	9C6J	45248	2025-02-12	2024-06-07	2.41	3.08	2.55	2.9	0.008	0.79	0.0	0.05	25.12	0.01	1.871	10.86	0.00	0.0	0.0	0.0	—	0.87	0.89	—	2.9	0.008	0.67	0.0	0.04	24.39	0.01	1.886	8.14	0.00	0.0	0.0	0.0	—	0.26	0.87	0.91	—	8345	0	2	387	21	0	0	logfile
✔	7R6N	24283	2025-02-12	2021-06-22	4.1	3.51	—	3.7	0.006	0.96	0.0	0.04	25.04	0.01	2.036	3.68	0.00	0.0	0.0	0.0	—	0.56	0.75	—	3.7	0.007	0.84	0.0	0.04	24.91	0.01	1.757	15.00	0.00	0.0	0.0	0.0	—	1.26	0.58	0.76	—	7588	0	2	354	12	0	0	logfile
✔	9C6i	45247	2025-02-12	2024-06-07	2.56	3.19	2.65	2.9	0.008	0.68	0.0	0.04	25.62	0.01	1.892	11.33	0.00	0.0	0.0	0.0	—	0.92	0.89	—	2.9	0.010	0.74	0.0	0.05	25.15	0.01	1.844	9.20	0.00	0.0	0.0	0.0	—	1.28	0.93	0.93	—	8471	0	2	393	21	0	0	logfile
✔	8oWJ	17238	2025-02-10	2023-04-28	3.75	3.75	3.51	4.1	0.012	2.26	0.0	0.11	15.84	0.02	2.610	8.57	3.57	0.0	100.0	0.0	-1.73	0.45	0.61	2.82	4.2	0.005	0.93	0.0	0.05	16.20	0.00	2.567	19.18	0.00	10.3	89.7	0.0	-3.29	2.64	0.49	0.72	3.31	2720	360	10	0	0	0	0	logfile
✔	8YBE	39117	2025-02-10	2024-02-13	2.3	2.50	2.34	2.5	0.006	0.89	0.0	0.05	15.84	0.01	2.236	18.77	2.34	0.0	100.0	0.0	1.36	0.67	0.82	5.54	2.5	0.005	0.71	0.0	0.04	16.53	0.00	2.598	11.36	1.00	2.2	97.8	0.0	1.31	0.32	0.68	0.83	5.54	3110	370	3	0	2	197	0	logfile
✔	9B73	44299	2025-02-12	2024-03-27	1.96	2.85	2.08	2.6	0.004	0.50	0.0	0.05	14.71	0.01	1.936	6.02	0.36	0.0	100.0	0.0	0.18	0.76	0.90	5.56	2.6	0.003	0.52	0.0	0.04	13.78	0.00	2.011	4.94	0.95	0.9	99.1	0.0	0.82	1.22	0.76	0.90	4.44	8016	978	9	0	15	66	0	logfile
✔	8QPZ	18570	2025-02-11	2023-10-03	2.5	2.74	2.49	2.9	0.004	0.70	0.0	0.05	10.84	0.00	2.495	9.26	8.57	0.0	100.0	0.0	-1.32	0.50	0.78	4.05	2.9	0.006	0.65	0.0	0.05	12.95	0.00	2.528	4.15	8.10	6.1	93.9	0.0	-2.39	0.41	0.52	0.81	4.63	4116	612	12	0	0	0	0	logfile
✔	8KF4	37198	2025-02-10	2023-08-15	3.0	3.12	2.82	3.2	0.010	0.77	0.0	0.07	12.82	0.00	2.605	1.00	0.00	0.0	100.0	0.0	-4.40	0.39	0.91	6.86	3.3	0.003	0.48	0.0	0.06	14.12	0.00	2.664	1.33	0.00	0.0	100.0	0.0	-1.06	1.19	0.38	0.91	7.82	1500	204	6	0	0	0	0	logfile
✔	8K15	36786	2025-02-14	2023-07-10	2.58	2.79	2.58	2.9	0.009	1.04	0.0	0.06	25.09	0.01	1.850	4.02	0.00	0.0	0.0	0.0	—	0.70	0.81	—	2.8	0.009	0.91	0.0	0.05	24.72	0.01	1.745	4.29	0.00	0.0	0.0	0.0	—	0.29	0.68	0.82	—	10093	0	2	470	2	0	0	logfile
✔	8oT3	17167	2025-02-10	2023-04-20	2.73	3.21	2.60	3.2	0.014	2.33	0.0	0.13	16.88	0.01	2.559	0.00	0.00	0.0	100.0	0.0	-3.27	0.52	0.76	7.19	3.2	0.003	0.72	0.0	0.05	16.62	0.00	2.532	7.05	3.17	3.8	96.2	0.0	-3.41	1.86	0.42	0.79	7.11	2460	336	12	0	0	0	0	logfile
✔	8R47	18881	2025-02-11	2023-11-13	2.25	2.05	2.13	2.3	0.013	2.04	0.0	0.10	15.67	0.02	2.041	0.82	0.00	0.0	100.0	0.0	-4.59	0.54	0.81	6.28	2.3	0.003	0.68	0.0	0.04	16.30	0.00	2.507	7.33	1.77	3.0	97.0	0.0	-3.99	1.04	0.52	0.82	6.08	3780	498	6	0	0	0	0	logfile
✔	8oT4	17168	2025-02-11	2023-04-20	2.97	3.23	2.90	3.5	0.012	2.30	0.0	0.13	15.19	0.01	2.527	0.00	0.00	0.0	100.0	0.0	-3.85	0.61	0.76	5.14	3.5	0.004	0.78	0.0	0.05	17.90	0.00	2.602	7.32	1.72	1.4	98.6	0.0	-2.54	1.33	0.60	0.79	3.95	3444	444	12	0	0	0	0	logfile
✔	8oWD	17234	2025-02-10	2023-04-27	3.28	3.36	1.89	3.4	0.012	2.44	0.0	0.12	21.08	0.00	2.506	5.03	16.13	0.0	100.0	0.0	-0.81	0.49	0.81	4.66	3.4	0.003	0.69	0.0	0.05	17.28	0.00	2.647	11.39	5.16	2.1	97.9	0.0	-3.59	0.70	0.46	0.79	5.72	1525	200	5	0	0	0	0	logfile
✔	8oQi	17111	2025-02-11	2023-04-12	3.1	3.09	2.34	3.3	0.013	2.01	0.0	0.11	18.29	0.01	2.465	9.18	2.63	0.0	100.0	0.0	0.22	0.51	0.84	3.31	3.3	0.006	0.62	0.0	0.05	16.91	0.00	2.633	4.14	3.68	3.1	96.9	0.0	-1.71	1.20	0.52	0.87	3.69	3810	560	10	0	0	0	0	logfile
✔	8oWK	17239	2025-02-10	2023-04-28	3.86	3.20	3.47	4.0	0.013	3.09	0.0	0.12	7.40	0.01	2.508	14.24	3.23	0.0	100.0	0.0	0.74	0.46	0.67	5.30	4.0	0.005	0.81	0.0	0.05	14.02	0.00	2.567	15.58	0.32	3.4	96.6	0.0	-3.26	1.71	0.49	0.73	6.42	3050	400	10	0	0	0	0	logfile
✔	8CZi	27098	2025-02-10	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.17	0.00	2.440	4.09	1.68	0.0	100.0	0.0	5.65	0.84	0.82	0.84	1.88	2550	339	6	0	0	0	0	logfile

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