Table showing results for February 2025

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CZi	27098	2025-02-10	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.17	0.00	2.440	4.09	1.68	0.0	100.0	0.0	5.65	0.84	0.82	0.84	1.88	2550	339	6	0	0	0	0	logfile
✔	6Wi9	21683	2025-02-12	2020-04-09	4.3	4.37	4.24	4.3	0.002	0.50	0.0	0.04	12.85	0.00	2.214	5.38	0.00	4.2	95.8	0.0	-3.72	0.77	0.78	—	4.3	0.003	0.70	0.0	0.04	13.85	0.00	2.404	10.27	0.11	5.9	94.1	0.0	-0.79	0.70	0.78	0.78	—	8550	1108	6	0	0	0	0	logfile
✔	7ZR8	14886	2025-02-11	2022-05-03	3.7	3.81	3.43	3.8	0.003	0.46	0.0	0.04	8.42	0.00	2.181	7.02	0.74	3.9	96.1	0.0	-0.94	0.72	0.82	2.69	3.8	0.004	0.61	0.0	0.04	13.18	0.00	2.338	7.98	3.71	4.5	95.5	0.0	-1.02	0.50	0.72	0.82	2.28	3693	471	4	0	1	0	0	logfile
✔	7WVY	32862	2025-02-12	2022-02-11	3.0	2.82	—	3.0	0.003	0.51	0.0	0.04	12.97	0.00	2.251	9.20	0.13	1.9	98.1	0.0	0.72	0.59	0.73	2.50	3.0	0.003	0.61	0.0	0.04	15.56	0.00	2.581	10.05	1.87	2.1	97.9	0.0	0.80	0.53	0.61	0.80	2.64	7094	922	5	0	0	0	0	logfile
✔	6W8N	21575	2025-02-11	2020-03-20	3.2	3.39	—	3.3	0.007	0.77	0.0	0.05	16.69	0.00	2.244	12.74	8.14	7.1	92.9	0.0	-2.74	0.61	0.85	1.84	3.3	0.003	0.66	0.0	0.04	16.87	0.00	2.479	8.49	5.28	4.3	95.7	0.0	0.63	0.90	0.59	0.85	2.41	6160	804	2	0	0	0	0	logfile
✔	7BW4	30226	2025-02-13	2020-04-13	3.7	3.92	—	3.8	0.004	0.66	1.0	0.05	15.16	0.00	2.078	16.25	1.68	4.3	95.5	0.2	-2.50	0.77	0.77	1.82	3.8	0.004	0.81	0.0	0.05	16.64	0.00	2.359	12.32	3.05	4.2	95.8	0.0	-0.90	1.57	0.78	0.77	1.36	8605	1078	5	0	2	0	0	logfile
✔	7WK1	32555	2025-02-14	2022-01-08	3.25	3.54	—	3.6	0.002	0.44	0.0	0.04	8.42	0.00	2.212	6.55	2.94	5.2	94.7	0.1	-4.01	0.65	0.76	1.98	3.5	0.003	0.62	0.0	0.04	13.44	0.00	2.458	9.82	3.03	5.7	94.2	0.1	0.01	0.78	0.71	0.84	1.40	10200	1330	4	0	2	0	0	logfile
✔	7NS4	12560	2025-02-11	2021-03-05	3.9	3.81	3.79	3.8	0.006	0.79	0.0	0.05	14.40	0.00	2.116	9.17	0.00	10.8	89.2	0.0	-1.02	0.75	0.84	2.90	3.8	0.004	0.67	0.0	0.04	16.08	0.00	2.383	7.22	2.55	8.3	91.7	0.0	0.15	0.34	0.74	0.83	2.24	5465	698	4	0	2	0	0	logfile
✔	8EQS	28544	2025-02-11	2022-10-09	3.1	3.53	3.10	3.4	0.005	0.74	0.0	0.04	19.17	0.00	2.219	12.31	0.00	2.8	97.2	0.0	0.01	0.66	0.82	2.72	3.4	0.003	0.55	0.0	0.04	18.68	0.00	2.586	5.12	2.32	1.9	98.1	0.0	1.88	1.15	0.69	0.87	2.22	3654	438	6	0	2	0	0	logfile
✔	7XR4	33407	2025-02-14	2022-05-09	3.4	3.26	3.35	3.4	0.007	0.94	0.0	0.05	15.58	0.00	2.304	10.91	0.29	2.1	97.9	0.0	1.68	0.73	0.85	1.65	3.4	0.002	0.52	0.0	0.04	14.82	0.00	2.593	9.67	1.33	0.9	99.1	0.0	3.22	0.38	0.70	0.84	1.31	10026	1278	9	0	27	0	0	logfile
✔	8Hio	34824	2025-02-12	2022-11-21	3.73	4.15	3.86	4.0	0.005	0.66	0.0	0.04	18.51	0.00	1.744	10.33	0.00	2.8	97.2	0.0	2.22	0.74	0.74	0.93	4.0	0.003	0.69	0.0	0.04	19.67	0.00	1.971	11.89	3.79	1.4	98.6	0.0	1.78	1.70	0.76	0.75	0.81	6681	719	5	47	2	0	0	logfile
✔	7oZ3	13119	2025-02-12	2021-06-25	4.46	4.17	4.34	4.0	0.011	1.27	2.0	0.08	23.03	0.00	2.334	8.45	0.29	4.3	95.7	0.0	0.64	0.85	0.79	—	4.0	0.003	0.62	0.0	0.04	20.60	0.00	2.459	8.70	0.00	3.0	97.0	0.0	1.29	0.78	0.86	0.83	—	8209	804	8	88	2	0	0	logfile
✘	6UXA	20931	2025-02-14	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✔	8A93	15267	2025-02-12	2022-06-27	3.05	3.59	3.21	3.4	0.005	0.57	0.0	0.04	18.98	0.00	2.072	4.02	0.64	3.4	96.6	0.0	1.45	0.73	0.86	2.30	3.4	0.003	0.52	0.0	0.03	19.18	0.00	1.943	3.53	1.75	3.4	96.6	0.0	1.92	1.24	0.71	0.87	2.01	7353	828	9	44	4	0	0	logfile
✔	7Z52	14513	2025-02-11	2022-03-07	3.4	3.41	3.27	3.4	0.004	0.66	0.0	0.04	15.64	0.00	2.209	8.49	0.00	1.8	98.0	0.3	-1.69	0.77	0.84	2.48	3.4	0.003	0.57	0.0	0.04	17.08	0.00	2.581	4.89	1.96	8.0	91.9	0.1	-0.31	0.58	0.77	0.87	2.39	5911	746	4	5	1	0	0	logfile
✔	8H1J	34428	2025-02-11	2022-10-03	3.1	3.36	3.20	3.3	0.005	0.53	0.0	0.03	22.06	0.00	2.232	8.41	5.19	1.7	98.3	0.0	2.19	0.62	0.67	2.02	3.4	0.005	0.56	0.0	0.04	22.25	0.00	2.189	6.55	4.87	2.0	98.0	0.0	1.34	1.44	0.71	0.79	1.81	5773	362	5	134	1	0	0	logfile
✔	7WU2	32817	2025-02-12	2022-02-05	2.8	2.56	—	2.8	0.002	0.51	0.0	0.04	12.86	0.00	2.200	6.51	0.00	2.1	97.9	0.0	0.79	0.64	0.77	2.92	2.8	0.003	0.59	0.0	0.04	15.91	0.00	2.510	5.22	2.27	3.4	96.6	0.0	0.85	1.20	0.68	0.83	3.14	7829	1010	5	0	0	0	0	logfile
✔	8ZH8	60096	2025-02-14	2024-05-10	3.19	3.97	3.21	3.6	0.003	0.67	0.0	0.04	12.78	0.00	2.207	11.98	0.10	2.9	97.1	0.0	0.57	0.68	0.68	1.06	3.7	0.003	0.72	0.0	0.04	16.34	0.00	2.495	10.82	2.39	3.7	96.2	0.1	0.75	0.96	0.70	0.76	0.75	10048	1316	8	0	1	0	0	logfile
✔	7MYN	24081	2025-02-14	2021-05-21	2.79	3.01	2.81	3.2	0.003	0.71	0.0	0.04	14.11	0.00	2.280	7.01	0.26	2.5	97.5	0.0	-0.41	0.65	0.79	2.43	3.1	0.003	0.69	0.0	0.04	17.56	0.00	2.474	10.81	2.15	2.3	97.7	0.0	0.70	0.54	0.63	0.80	2.49	10426	1253	3	0	0	8	0	logfile
✔	7XJA	33223	2025-02-12	2022-04-15	3.5	3.35	3.43	3.4	0.003	0.60	0.0	0.04	13.73	0.00	2.182	9.41	0.00	1.5	98.5	0.0	1.81	0.57	0.72	3.01	3.4	0.003	0.68	0.0	0.04	16.01	0.00	2.518	8.59	2.22	3.1	96.9	0.0	2.39	1.79	0.64	0.81	3.25	7276	944	2	0	0	0	0	logfile

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