Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EJC	28177	2025-02-13	2022-09-16	3.0	3.01	3.04	3.1	0.006	0.64	0.0	0.04	13.37	0.00	2.199	9.48	0.00	3.6	96.4	0.0	1.20	0.69	0.84	3.08	3.2	0.002	0.62	0.0	0.04	15.96	0.00	2.530	6.26	1.66	2.3	97.7	0.0	1.50	0.40	0.69	0.85	2.00	8659	1132	6	0	1	0	0	logfile
✔	6XDC	22136	2025-02-10	2020-06-10	2.9	3.80	—	3.7	0.006	0.79	0.0	0.06	13.65	0.01	2.279	4.95	1.15	4.0	96.0	0.0	-2.72	0.47	0.71	3.58	3.7	0.004	0.62	0.0	0.04	15.07	0.00	2.452	7.02	4.02	4.0	96.0	0.0	0.76	1.66	0.45	0.70	3.42	3150	386	2	0	0	0	0	logfile
✔	8J7N	36043	2025-02-10	2023-04-27	3.0	3.05	2.62	3.0	0.008	0.82	0.0	0.06	12.26	0.00	2.025	16.74	0.00	13.5	86.5	0.0	-5.22	0.42	0.90	5.56	3.0	0.006	0.75	0.0	0.06	15.99	0.00	2.572	8.44	2.91	11.3	88.7	0.0	-4.17	1.29	0.41	0.91	5.17	3258	405	3	0	0	0	0	logfile
✔	6UCU	20728	2025-02-14	2019-09-17	3.06	3.72	—	3.6	0.012	1.54	0.0	0.09	15.16	0.01	2.022	3.01	0.12	2.8	97.2	0.0	-1.25	0.59	0.73	3.07	3.6	0.004	0.66	0.0	0.04	14.22	0.00	2.477	6.32	2.00	3.0	97.0	0.0	1.20	0.46	0.51	0.69	3.07	8198	958	20	0	60	0	0	logfile
✔	7N0C	24103	2025-02-11	2021-05-25	3.4	3.71	—	3.7	0.009	1.00	0.0	0.05	16.67	0.01	2.180	6.79	0.00	1.3	98.7	0.0	-3.80	0.72	0.80	2.48	3.7	0.006	0.66	0.0	0.04	17.16	0.00	1.050	8.35	3.25	6.3	93.7	0.0	-1.77	1.15	0.73	0.82	2.27	6088	644	6	49	7	1	0	logfile
✔	7TYo	26190	2025-02-13	2022-02-14	2.7	2.09	2.60	2.4	0.002	0.47	0.0	0.04	12.87	0.00	2.176	5.50	1.37	2.0	98.0	0.0	-3.13	0.54	0.74	3.81	2.7	0.003	0.59	0.0	0.04	16.20	0.00	2.390	5.89	2.75	2.1	97.9	0.0	0.47	1.04	0.55	0.76	3.52	9052	1141	8	0	4	0	0	logfile
✔	7WVV	32859	2025-02-12	2022-02-11	2.9	3.01	—	3.1	0.002	0.45	0.0	0.04	12.21	0.00	2.286	7.42	0.00	2.2	97.8	0.0	0.74	0.59	0.74	2.55	3.0	0.004	0.58	0.0	0.04	15.53	0.00	2.510	9.70	2.70	3.1	96.9	0.0	0.32	0.46	0.61	0.79	2.65	7020	911	5	0	0	0	0	logfile
✔	7XMT	33304	2025-02-12	2022-04-26	2.8	2.93	2.65	3.0	0.002	0.47	0.0	0.04	9.40	0.00	2.267	6.46	0.00	3.0	97.0	0.0	-3.88	0.55	0.63	1.96	2.9	0.003	0.72	0.0	0.04	14.50	0.00	2.488	11.35	1.76	3.3	96.7	0.0	-0.56	1.29	0.61	0.74	2.40	8137	1068	6	0	1	0	0	logfile
✔	7XK2	33241	2025-02-13	2022-04-19	3.1	3.31	3.13	3.3	0.005	1.02	0.0	0.06	16.48	0.01	2.251	6.29	0.32	6.7	93.3	0.0	-2.41	0.64	0.76	2.08	3.3	0.003	0.66	0.0	0.04	17.05	0.00	2.556	9.75	2.78	5.4	94.6	0.0	-0.65	1.11	0.66	0.80	1.86	8791	1128	6	0	1	0	0	logfile
✔	7Q4C	13801	2025-02-14	2021-10-30	4.08	4.49	4.12	4.4	0.007	0.92	0.0	0.05	14.78	0.01	2.077	6.86	0.00	3.3	96.7	0.0	-1.44	0.71	0.75	—	4.4	0.003	0.60	0.0	0.04	14.17	0.00	2.400	5.92	0.00	2.2	97.8	0.0	1.82	0.91	0.69	0.74	—	9503	585	5	0	11	0	4598	logfile
✔	7Lo7	23463	2025-02-11	2021-02-09	3.74	4.00	—	4.0	0.008	1.12	0.0	0.06	16.50	0.01	2.123	11.72	0.59	11.7	88.2	0.1	-2.56	0.65	0.78	1.34	4.0	0.003	0.77	0.0	0.04	17.32	0.01	2.535	9.14	2.95	7.7	92.3	0.0	-0.84	0.41	0.64	0.76	1.23	6149	805	3	0	0	0	0	logfile
✔	7VQX	32095	2025-02-13	2021-10-21	2.74	2.89	—	2.9	0.004	0.55	0.0	0.04	14.12	0.00	2.094	8.36	0.00	3.6	96.4	0.0	0.32	0.63	0.79	3.28	2.9	0.002	0.51	0.0	0.04	16.25	0.00	2.492	5.35	1.73	2.8	97.2	0.0	1.17	0.31	0.60	0.80	2.53	9049	1148	6	0	0	0	0	logfile
✔	8GUB	34272	2025-02-14	2022-09-11	2.73	2.94	2.83	3.0	0.008	0.62	0.0	0.04	14.43	0.00	1.994	34.45	0.17	4.8	95.2	0.0	-0.28	0.51	0.65	3.44	3.0	0.004	0.63	0.0	0.04	17.19	0.00	2.470	7.05	2.26	2.9	97.1	0.0	0.57	0.51	0.66	0.78	3.25	10358	1253	3	0	1	0	0	logfile
✔	7WVX	32861	2025-02-12	2022-02-11	2.8	2.96	—	3.0	0.002	0.49	0.0	0.04	12.15	0.00	2.251	8.52	0.00	2.1	97.9	0.0	0.86	0.60	0.76	2.80	3.0	0.003	0.60	0.0	0.04	15.59	0.00	2.588	11.29	2.28	2.7	97.3	0.0	0.30	1.18	0.63	0.82	2.72	7070	920	5	0	0	0	0	logfile
✔	7WNQ	32633	2025-02-13	2022-01-19	2.7	2.91	2.72	3.0	0.012	1.20	6.0	0.07	9.17	0.01	2.155	1.80	0.63	3.6	96.4	0.0	-5.53	0.68	0.86	4.76	3.0	0.003	0.64	0.0	0.04	14.00	0.00	2.598	2.59	1.90	2.7	97.3	0.0	1.58	1.23	0.66	0.86	3.60	8847	1104	3	0	0	0	0	logfile
✔	8AFA	15393	2025-02-13	2022-07-16	3.16	3.52	3.20	3.5	0.003	0.48	0.0	0.04	14.99	0.00	2.223	6.23	0.53	1.8	98.2	0.0	0.26	0.63	0.83	2.67	3.5	0.003	0.53	0.0	0.04	15.34	0.00	2.539	8.49	2.11	1.7	98.3	0.0	2.54	0.89	0.57	0.81	2.22	9008	1208	6	0	0	0	0	logfile
✔	7X8R	33057	2025-02-12	2022-03-14	2.61	2.75	—	2.8	0.006	0.79	0.0	0.05	15.07	0.00	2.201	7.50	0.00	3.1	96.9	0.0	0.83	0.67	0.80	3.43	2.8	0.003	0.53	0.0	0.04	16.91	0.00	2.532	5.71	1.87	2.8	97.2	0.0	1.56	0.35	0.69	0.83	2.98	8493	1051	6	0	1	0	0	logfile
✔	7WSP	32763	2025-02-12	2022-01-30	4.09	4.37	—	4.2	0.008	1.11	0.0	0.06	10.99	0.01	2.212	8.21	0.68	13.2	86.6	0.2	-4.84	0.72	0.80	—	4.2	0.003	0.74	0.0	0.04	11.77	0.00	2.107	7.70	0.11	9.5	90.5	0.0	-2.32	1.36	0.71	0.78	—	7883	1009	4	0	0	0	0	logfile
✔	7VAB	31836	2025-02-13	2021-08-28	3.2	3.44	—	3.4	0.004	0.80	0.0	0.06	9.19	0.01	2.270	4.38	0.00	1.9	98.1	0.0	-2.44	0.55	0.70	2.90	3.4	0.004	0.59	0.0	0.04	14.33	0.00	2.524	5.06	2.38	2.8	97.2	0.0	1.01	0.77	0.66	0.81	2.67	8772	1077	7	0	6	0	0	logfile
✔	7EW7	31349	2025-02-14	2021-05-24	3.27	3.91	—	3.9	0.003	0.59	0.0	0.04	13.52	0.00	2.016	6.73	0.71	3.6	96.4	0.0	-2.17	0.56	0.74	2.49	3.9	0.004	0.60	0.0	0.04	15.58	0.00	2.468	5.73	3.55	5.8	94.2	0.0	-0.25	0.41	0.61	0.79	2.21	9004	1144	6	0	1	0	0	logfile

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