Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X9V	22112	2024-09-28	2020-06-03	3.5	3.67	3.41	3.6	0.026	1.73	0.0	0.10	11.13	0.01	2.233	1.43	0.29	3.4	96.4	0.3	0.76	0.79	0.83	2.85	3.6	0.003	0.65	0.0	0.05	13.39	0.00	2.534	6.42	2.10	4.4	95.5	0.1	0.35	1.65	0.79	0.84	2.41	19590	2358	33	0	87	0	0	logfile
✔	6LT0	0966	2024-09-28	2020-01-21	3.2	3.27	—	3.2	0.005	1.08	0.0	0.06	11.86	0.01	1.898	5.84	0.00	13.3	86.4	0.3	-5.35	0.59	0.57	1.80	3.2	0.005	0.82	0.0	0.05	16.13	0.00	2.386	12.51	3.98	11.9	88.0	0.1	-2.73	1.07	0.68	0.75	1.78	17774	2228	6	0	0	0	0	logfile
✘	7URC	26708	2024-09-23	2022-04-21	3.14	3.74	3.25	3.6	0.018	1.00	0.0	0.88	25.59	0.00	2.248	10.09	0.00	3.5	96.5	0.0	-3.02	0.58	0.86	3.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5561	658	4	0	12	0	0	logfile
✘	7W2J	32262	2024-09-27	2021-11-24	3.6	2.90	—	3.6	0.030	1.49	0.0	0.56	15.66	0.01	2.011	18.00	0.00	11.0	88.7	0.4	-2.64	0.65	0.79	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16522	2104	10	0	10	0	0	logfile
✔	8FMZ	29301	2024-09-24	2022-12-26	2.59	2.79	2.62	2.9	0.004	0.57	0.0	0.04	8.86	0.00	2.264	6.51	0.21	1.7	98.3	0.0	1.58	0.57	0.77	3.79	2.8	0.003	0.58	0.0	0.04	14.27	0.00	2.545	4.03	1.81	2.1	97.9	0.0	1.55	1.08	0.67	0.86	3.89	8768	1126	6	0	0	0	0	logfile
✔	6X9U	22111	2024-09-28	2020-06-03	3.2	3.30	3.15	3.3	0.024	1.69	0.0	0.10	11.51	0.01	2.174	1.19	0.15	3.3	96.5	0.3	0.43	0.78	0.86	4.11	3.3	0.004	0.62	0.0	0.04	13.22	0.00	2.455	3.73	1.66	4.4	95.5	0.1	0.29	1.30	0.76	0.88	3.20	19590	2358	33	0	87	0	0	logfile
✔	7JK2	22359	2024-09-29	2020-07-27	3.2	3.80	3.18	3.4	0.006	0.92	0.0	0.05	17.90	0.01	2.092	4.03	0.23	3.5	96.5	0.0	-3.50	0.85	0.86	2.35	3.4	0.003	0.61	0.0	0.04	18.43	0.00	1.928	6.03	1.31	2.6	97.4	0.0	1.80	0.60	0.86	0.88	1.85	21619	2523	13	66	8	0	0	logfile
✔	8E5A	27908	2024-09-28	2022-08-20	3.3	3.43	3.30	3.4	0.003	0.67	0.0	0.04	16.36	0.00	1.735	10.02	1.86	5.0	94.8	0.2	-1.24	0.60	0.81	2.38	3.4	0.003	0.63	1.0	0.04	16.15	0.00	2.159	6.69	1.67	4.7	95.3	0.0	0.00	1.24	0.60	0.85	2.31	20257	2502	10	0	17	0	0	logfile
✔	7LPN	23480	2024-09-28	2021-02-12	3.61	4.25	3.76	4.1	0.004	0.66	0.0	0.05	17.48	0.00	2.103	3.17	0.22	6.5	93.5	0.0	-0.80	0.81	0.82	2.63	4.1	0.004	0.64	0.0	0.04	13.36	0.00	2.475	5.74	2.31	6.7	93.3	0.0	-0.76	1.12	0.78	0.79	2.36	17787	2076	42	0	105	0	0	logfile
✔	7K7H	22699	2024-09-23	2020-09-22	3.0	3.57	2.98	3.4	0.003	0.54	0.0	0.04	13.31	0.00	2.281	8.54	0.00	8.1	91.9	0.0	-5.02	0.75	0.80	3.30	3.3	0.004	0.82	0.0	0.05	16.61	0.00	2.375	8.13	3.27	5.5	94.5	0.0	-1.87	0.73	0.72	0.85	3.40	6323	816	8	0	0	0	0	logfile
✔	6VMS	21243	2024-09-24	2020-01-28	3.8	3.48	—	3.7	0.005	0.70	0.0	0.04	11.04	0.00	2.082	5.72	0.00	2.3	97.7	0.0	-0.27	0.57	0.71	1.53	3.6	0.003	0.69	0.0	0.04	15.74	0.00	2.371	10.09	2.96	3.0	97.0	0.0	0.27	1.06	0.65	0.84	2.17	8953	1135	6	0	1	0	0	logfile
✔	8GVA	34289	2024-09-24	2022-09-14	3.25	3.43	3.24	3.4	0.004	0.68	0.0	0.04	14.13	0.00	2.259	5.49	0.00	5.6	94.4	0.0	-0.61	0.64	0.81	2.22	3.4	0.003	0.60	0.0	0.04	16.33	0.00	2.504	5.31	2.05	5.6	94.4	0.0	0.85	0.36	0.60	0.81	1.56	8072	1022	2	0	0	0	0	logfile
✔	6UoT	20832	2024-09-29	2019-10-15	3.3	3.41	—	3.4	0.009	1.09	0.0	0.06	12.07	0.01	2.166	4.78	4.35	5.9	94.1	0.0	-4.68	0.76	0.83	2.86	3.4	0.004	0.68	0.0	0.04	16.17	0.00	2.351	8.47	2.38	2.5	97.5	0.0	-0.33	1.98	0.78	0.87	1.89	72744	9072	48	0	0	0	0	logfile
✔	6X9S	22109	2024-09-28	2020-06-03	3.1	3.26	3.11	3.2	0.025	1.70	0.0	0.10	11.65	0.01	2.329	1.04	0.44	3.6	96.1	0.3	0.54	0.75	0.86	4.59	3.2	0.003	0.61	0.0	0.04	13.54	0.00	2.525	3.99	2.05	3.9	96.0	0.1	0.42	1.18	0.72	0.87	3.61	19590	2358	33	0	87	0	0	logfile
✔	7YJK	33873	2024-09-28	2022-07-20	3.2	3.33	3.18	3.3	0.008	0.89	0.0	0.05	14.22	0.01	2.223	8.05	0.21	7.1	92.1	0.7	-3.10	0.72	0.86	3.03	3.3	0.003	0.60	0.0	0.04	15.51	0.00	2.477	4.05	0.63	4.3	95.5	0.2	-0.49	1.57	0.71	0.87	2.29	17658	2236	10	0	4	0	0	logfile
✔	6Y3Y	10676	2024-09-23	2020-02-19	3.39	3.74	3.39	3.7	0.008	1.04	0.0	0.07	17.09	0.01	2.024	4.49	0.33	10.5	89.5	0.0	-4.44	0.80	0.83	4.70	3.7	0.004	0.70	0.0	0.05	12.38	0.00	2.536	7.30	2.61	8.3	91.7	0.0	-2.25	1.29	0.82	0.86	4.09	5854	664	12	0	34	0	0	logfile
✔	7JK5	22362	2024-09-28	2020-07-27	3.9	4.53	3.88	3.9	0.007	1.12	0.0	0.06	19.28	0.01	2.049	5.58	0.29	4.9	95.1	0.0	-3.05	0.89	0.84	1.20	3.9	0.003	0.73	0.0	0.04	19.94	0.00	1.944	12.05	1.66	3.4	96.6	0.0	0.99	3.51	0.90	0.85	1.18	17408	2003	11	64	6	0	0	logfile
✔	7V9X	31829	2024-09-25	2021-08-27	2.82	3.18	—	3.1	0.005	0.63	0.0	0.04	24.07	0.00	2.241	6.09	0.00	4.0	96.0	0.0	0.17	0.75	0.85	3.29	3.1	0.003	0.59	0.0	0.04	24.32	0.00	2.524	5.15	1.76	3.2	96.8	0.0	0.59	0.88	0.72	0.85	2.63	10550	760	9	210	0	0	0	logfile
✔	7UMN	26606	2024-09-26	2022-04-07	3.6	3.47	—	3.5	0.011	0.89	0.0	0.06	12.51	0.01	2.026	15.23	0.22	7.9	92.1	0.0	-2.39	0.69	0.76	3.01	3.5	0.004	0.73	0.0	0.05	15.32	0.00	2.394	12.45	1.99	5.1	94.9	0.0	-0.88	1.00	0.69	0.76	2.24	12375	1581	9	0	0	0	0	logfile
✔	6VM3	21237	2024-09-27	2020-01-27	3.07	3.76	3.02	3.5	0.017	1.85	0.0	0.09	23.00	0.03	2.282	5.90	0.92	3.1	96.9	0.0	1.08	0.80	0.86	3.70	3.5	0.003	0.68	0.0	0.04	14.81	0.00	2.577	5.84	2.58	3.4	96.6	0.0	2.00	0.49	0.77	0.88	3.59	15180	1810	18	0	15	0	0	logfile

• Page 1 of 539
• next →