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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7WVY | 32862 | 2024-09-24 | 2022-02-11 | 3.0 | 2.82 | — | 3.0 | 0.003 | 0.51 | 0.0 | 0.04 | 12.97 | 0.00 | 2.251 | 9.20 | 0.13 | 1.9 | 98.1 | 0.0 | 0.72 | 0.59 | 0.73 | 2.50 | 3.0 | 0.004 | 0.64 | 0.0 | 0.04 | 15.76 | 0.00 | 2.549 | 10.40 | 3.07 | 2.3 | 97.7 | 0.0 | 0.59 | 0.56 | 0.61 | 0.80 | 2.75 | 7094 | 922 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VHQ | 32003 | 2024-09-27 | 2021-09-22 | 3.27 | 3.68 | — | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 13.43 | 0.00 | 2.165 | 9.53 | 0.00 | 3.1 | 96.9 | 0.0 | 1.82 | 0.73 | 0.82 | 1.67 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 15.50 | 0.00 | 2.427 | 7.74 | 1.50 | 3.3 | 96.7 | 0.0 | 1.88 | 0.40 | 0.74 | 0.84 | 1.53 | 16650 | 2076 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Bo8 | 7120 | 2024-09-28 | 2017-11-18 | 3.6 | 3.64 | — | 3.6 | 0.008 | 1.19 | 0.0 | 0.06 | 10.83 | 0.01 | 2.286 | 7.28 | 0.97 | 11.0 | 89.0 | 0.0 | -4.49 | 0.56 | 0.62 | 1.58 | 3.6 | 0.004 | 0.78 | 0.0 | 0.04 | 16.06 | 0.00 | 2.450 | 9.92 | 3.25 | 10.0 | 90.0 | 0.0 | -0.46 | 1.30 | 0.75 | 0.80 | 1.94 | 19048 | 2372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WUN | 21917 | 2024-09-25 | 2020-05-04 | 3.9 | 4.00 | — | 3.9 | 0.005 | 0.80 | 0.0 | 0.05 | 13.70 | 0.00 | 2.166 | 14.26 | 1.14 | 18.4 | 81.6 | 0.0 | -6.35 | 0.68 | 0.80 | 1.75 | 3.9 | 0.003 | 0.72 | 0.0 | 0.04 | 14.78 | 0.00 | 2.541 | 7.21 | 0.85 | 9.9 | 90.1 | 0.0 | -3.47 | 0.55 | 0.67 | 0.78 | 1.54 | 10082 | 1326 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EKT | 31176 | 2024-09-27 | 2021-04-06 | 3.02 | 3.67 | — | 3.6 | 0.008 | 0.78 | 0.0 | 0.07 | 11.10 | 0.00 | 2.385 | 6.01 | 0.30 | 5.1 | 94.9 | 0.0 | -1.97 | 0.66 | 0.80 | 3.29 | 3.6 | 0.003 | 0.62 | 0.0 | 0.05 | 12.22 | 0.00 | 2.481 | 4.48 | 1.01 | 5.9 | 94.1 | 0.0 | -0.14 | 0.39 | 0.63 | 0.78 | 3.23 | 16195 | 1980 | 15 | 0 | 30 | 0 | 0 | logfile |
✔ | 6o7i | 0642 | 2024-09-28 | 2019-03-07 | 3.2 | 3.32 | — | 3.3 | 0.012 | 1.17 | 0.0 | 0.07 | 13.66 | 0.01 | 2.131 | 7.58 | 1.03 | 8.2 | 91.8 | 0.0 | -4.51 | 0.71 | 0.77 | 3.69 | 3.3 | 0.005 | 0.72 | 0.0 | 0.05 | 16.17 | 0.01 | 2.392 | 7.20 | 1.74 | 6.3 | 93.7 | 0.0 | -1.25 | 1.71 | 0.75 | 0.84 | 2.85 | 20276 | 2377 | 16 | 49 | 97 | 0 | 0 | logfile |
✔ | 7PKo | 13474 | 2024-09-28 | 2021-08-26 | 3.9 | 4.01 | — | 3.9 | 0.004 | 0.66 | 0.0 | 0.04 | 14.59 | 0.00 | 2.205 | 10.80 | 0.00 | 7.5 | 92.5 | 0.0 | -4.16 | 0.76 | 0.82 | 2.59 | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 16.27 | 0.00 | 2.219 | 8.31 | 3.08 | 4.3 | 95.7 | 0.0 | -0.53 | 0.61 | 0.75 | 0.81 | 2.33 | 20368 | 2504 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Y5N | 33621 | 2024-09-26 | 2022-06-17 | 3.45 | 3.26 | 3.40 | 3.3 | 0.005 | 0.69 | 0.0 | 0.05 | 14.10 | 0.01 | 2.249 | 4.70 | 5.43 | 5.5 | 94.5 | 0.0 | -1.51 | 0.77 | 0.79 | 2.83 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 14.94 | 0.00 | 2.262 | 6.04 | 3.48 | 5.0 | 95.0 | 0.0 | -0.81 | 1.21 | 0.78 | 0.83 | 2.40 | 13034 | 1639 | 6 | 0 | 20 | 0 | 0 | logfile |
✔ | 6Qi8 | 4552 | 2024-09-27 | 2019-01-18 | 3.75 | 3.92 | — | 10.4 | 0.004 | 0.91 | 0.0 | 0.05 | 16.35 | 0.01 | 1.999 | 4.27 | 0.19 | 5.5 | 94.5 | 0.0 | -5.84 | 0.17 | 0.02 | 0.43 | 9.9 | 0.004 | 0.90 | 0.0 | 0.05 | 17.87 | 0.01 | 2.185 | 14.58 | 2.35 | 7.5 | 92.5 | 0.0 | -2.50 | 1.54 | 0.32 | 0.22 | 0.55 | 14789 | 1907 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 7ELA | 31178 | 2024-09-26 | 2021-04-09 | 3.4 | 3.44 | — | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 15.71 | 0.00 | 2.153 | 11.82 | 2.79 | 7.9 | 92.1 | 0.0 | -2.61 | 0.72 | 0.78 | 2.61 | 3.4 | 0.003 | 0.65 | 0.0 | 0.04 | 16.91 | 0.00 | 2.371 | 10.71 | 2.72 | 6.9 | 93.1 | 0.0 | -0.21 | 0.48 | 0.73 | 0.82 | 2.23 | 11791 | 1451 | 5 | 7 | 3 | 0 | 0 | logfile |
✔ | 6Z8K | 11118 | 2024-09-28 | 2020-06-02 | 3.02 | 3.35 | — | 3.1 | 0.009 | 0.96 | 0.0 | 0.06 | 12.85 | 0.01 | 1.496 | 8.84 | 1.76 | 5.7 | 94.0 | 0.3 | -3.52 | 0.84 | 0.85 | 4.26 | 3.1 | 0.003 | 0.58 | 0.0 | 0.04 | 15.08 | 0.00 | 1.967 | 6.85 | 1.46 | 4.6 | 95.4 | 0.0 | 0.72 | 1.02 | 0.85 | 0.89 | 3.28 | 18587 | 2158 | 7 | 45 | 2 | 0 | 0 | logfile |
✔ | 6HYP | 0309 | 2024-09-26 | 2018-10-22 | 4.4 | 4.53 | — | 4.4 | 0.003 | 0.72 | 0.0 | 0.05 | 8.72 | 0.00 | 1.943 | 1.67 | 0.34 | 7.3 | 92.2 | 0.4 | -5.99 | 0.75 | 0.69 | — | 4.4 | 0.004 | 0.79 | 0.0 | 0.04 | 8.75 | 0.00 | 2.438 | 3.74 | 0.00 | 12.8 | 87.0 | 0.1 | -1.46 | 0.62 | 0.77 | 0.74 | — | 12392 | 2082 | 2 | 0 | 192 | 0 | 0 | logfile |
✔ | 7RU0 | 24692 | 2024-09-27 | 2021-08-16 | 4.3 | 3.77 | — | 4.2 | 0.005 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 2.146 | 8.30 | 0.00 | 6.9 | 93.1 | 0.0 | -3.06 | 0.48 | 0.48 | — | 4.2 | 0.003 | 0.87 | 0.0 | 0.04 | 14.36 | 0.01 | 2.274 | 10.74 | 0.00 | 5.7 | 94.3 | 0.0 | -0.75 | 0.99 | 0.61 | 0.62 | — | 12284 | 1536 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6o7H | 0641 | 2024-09-28 | 2019-03-07 | 2.9 | 3.03 | — | 3.0 | 0.006 | 1.10 | 0.0 | 0.07 | 14.23 | 0.01 | 1.596 | 11.46 | 1.21 | 5.3 | 94.6 | 0.1 | -4.34 | 0.74 | 0.81 | 3.78 | 3.0 | 0.003 | 0.66 | 0.0 | 0.04 | 17.92 | 0.00 | 2.448 | 6.70 | 2.05 | 4.4 | 95.6 | 0.0 | -0.41 | 1.32 | 0.76 | 0.86 | 3.02 | 17576 | 2038 | 14 | 51 | 96 | 0 | 0 | logfile |
✔ | 6W8N | 21575 | 2024-09-23 | 2020-03-20 | 3.2 | 3.39 | — | 3.3 | 0.007 | 0.77 | 0.0 | 0.05 | 16.69 | 0.00 | 2.244 | 12.74 | 8.14 | 7.1 | 92.9 | 0.0 | -2.74 | 0.61 | 0.85 | 1.84 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 16.91 | 0.00 | 2.404 | 9.37 | 5.73 | 4.3 | 95.7 | 0.0 | 0.75 | 0.91 | 0.58 | 0.85 | 2.34 | 6160 | 804 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ASi | 15616 | 2024-09-27 | 2022-08-19 | 2.9 | 2.71 | 2.83 | 2.9 | 0.009 | 1.27 | 0.0 | 0.05 | 20.47 | 0.01 | 1.929 | 5.10 | 0.00 | 2.5 | 97.4 | 0.1 | -0.83 | 0.54 | 0.77 | 4.04 | 2.9 | 0.003 | 0.68 | 0.0 | 0.04 | 18.50 | 0.00 | 2.484 | 5.38 | 1.74 | 1.9 | 98.1 | 0.0 | 1.26 | 0.54 | 0.59 | 0.82 | 3.01 | 14720 | 1789 | 14 | 0 | 21 | 0 | 0 | logfile |
✔ | 5YYS | 6859 | 2024-09-30 | 2017-12-11 | 4.2 | 4.57 | — | 4.1 | 0.016 | 2.27 | 0.0 | 0.10 | 15.30 | 0.01 | 2.201 | 22.76 | 2.34 | 27.3 | 70.1 | 2.6 | -5.98 | 0.85 | 0.71 | — | 4.1 | 0.005 | 1.24 | 0.0 | 0.06 | 13.00 | 0.01 | 2.314 | 34.01 | 0.00 | 23.9 | 75.6 | 0.5 | -3.94 | 1.67 | 0.87 | 0.73 | — | 24044 | 3244 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Uo1 | 26637 | 2024-09-27 | 2022-04-12 | 3.2 | 3.31 | — | 3.3 | 0.002 | 4.43 | 0.0 | 0.10 | 31.57 | 0.00 | 1.799 | 11.73 | 0.00 | 4.5 | 92.7 | 2.7 | 0.03 | 0.51 | 0.54 | 2.38 | 3.2 | 0.004 | 1.86 | 0.0 | 0.24 | 31.18 | 0.01 | 2.029 | 15.50 | 4.08 | 5.5 | 94.5 | 0.0 | -0.22 | 1.81 | 0.57 | 0.65 | 1.50 | 16588 | 112 | 4 | 455 | 10 | 0 | 5894 | logfile |
✔ | 6Qi9 | 4553 | 2024-09-27 | 2019-01-18 | 4.63 | 4.71 | — | 4.6 | 0.007 | 1.09 | 0.0 | 0.06 | 17.10 | 0.01 | 1.993 | 10.33 | 0.39 | 9.0 | 91.0 | 0.0 | -4.28 | 0.82 | 0.82 | — | 4.6 | 0.003 | 0.77 | 0.0 | 0.05 | 15.35 | 0.00 | 2.364 | 10.81 | 0.00 | 5.8 | 94.2 | 0.0 | -1.38 | 0.80 | 0.82 | 0.81 | — | 14559 | 1879 | 11 | 0 | 5 | 0 | 0 | logfile |
✔ | 5Z1F | 6875 | 2024-09-24 | 2017-12-26 | 4.8 | 4.85 | 4.58 | 4.8 | 0.006 | 0.87 | 0.0 | 0.05 | 13.13 | 0.01 | 2.213 | 25.36 | 5.04 | 9.8 | 89.2 | 1.0 | -4.90 | 0.60 | 0.76 | — | 4.8 | 0.003 | 0.79 | 0.0 | 0.04 | 11.65 | 0.01 | 2.425 | 12.31 | 0.00 | 6.5 | 93.5 | 0.0 | -0.03 | 1.75 | 0.59 | 0.77 | — | 8480 | 1202 | 2 | 0 | 0 | 0 | 0 | logfile |