Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WVY	32862	2024-09-24	2022-02-11	3.0	2.82	—	3.0	0.003	0.51	0.0	0.04	12.97	0.00	2.251	9.20	0.13	1.9	98.1	0.0	0.72	0.59	0.73	2.50	3.0	0.004	0.64	0.0	0.04	15.76	0.00	2.549	10.40	3.07	2.3	97.7	0.0	0.59	0.56	0.61	0.80	2.75	7094	922	5	0	0	0	0	logfile
✔	7VHQ	32003	2024-09-27	2021-09-22	3.27	3.68	—	3.5	0.003	0.60	0.0	0.04	13.43	0.00	2.165	9.53	0.00	3.1	96.9	0.0	1.82	0.73	0.82	1.67	3.5	0.003	0.62	0.0	0.04	15.50	0.00	2.427	7.74	1.50	3.3	96.7	0.0	1.88	0.40	0.74	0.84	1.53	16650	2076	12	0	0	0	0	logfile
✔	6Bo8	7120	2024-09-28	2017-11-18	3.6	3.64	—	3.6	0.008	1.19	0.0	0.06	10.83	0.01	2.286	7.28	0.97	11.0	89.0	0.0	-4.49	0.56	0.62	1.58	3.6	0.004	0.78	0.0	0.04	16.06	0.00	2.450	9.92	3.25	10.0	90.0	0.0	-0.46	1.30	0.75	0.80	1.94	19048	2372	4	0	0	0	0	logfile
✔	6WUN	21917	2024-09-25	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.003	0.72	0.0	0.04	14.78	0.00	2.541	7.21	0.85	9.9	90.1	0.0	-3.47	0.55	0.67	0.78	1.54	10082	1326	4	0	0	0	0	logfile
✔	7EKT	31176	2024-09-27	2021-04-06	3.02	3.67	—	3.6	0.008	0.78	0.0	0.07	11.10	0.00	2.385	6.01	0.30	5.1	94.9	0.0	-1.97	0.66	0.80	3.29	3.6	0.003	0.62	0.0	0.05	12.22	0.00	2.481	4.48	1.01	5.9	94.1	0.0	-0.14	0.39	0.63	0.78	3.23	16195	1980	15	0	30	0	0	logfile
✔	6o7i	0642	2024-09-28	2019-03-07	3.2	3.32	—	3.3	0.012	1.17	0.0	0.07	13.66	0.01	2.131	7.58	1.03	8.2	91.8	0.0	-4.51	0.71	0.77	3.69	3.3	0.005	0.72	0.0	0.05	16.17	0.01	2.392	7.20	1.74	6.3	93.7	0.0	-1.25	1.71	0.75	0.84	2.85	20276	2377	16	49	97	0	0	logfile
✔	7PKo	13474	2024-09-28	2021-08-26	3.9	4.01	—	3.9	0.004	0.66	0.0	0.04	14.59	0.00	2.205	10.80	0.00	7.5	92.5	0.0	-4.16	0.76	0.82	2.59	3.9	0.003	0.62	0.0	0.04	16.27	0.00	2.219	8.31	3.08	4.3	95.7	0.0	-0.53	0.61	0.75	0.81	2.33	20368	2504	8	0	0	0	0	logfile
✔	7Y5N	33621	2024-09-26	2022-06-17	3.45	3.26	3.40	3.3	0.005	0.69	0.0	0.05	14.10	0.01	2.249	4.70	5.43	5.5	94.5	0.0	-1.51	0.77	0.79	2.83	3.3	0.003	0.61	0.0	0.04	14.94	0.00	2.262	6.04	3.48	5.0	95.0	0.0	-0.81	1.21	0.78	0.83	2.40	13034	1639	6	0	20	0	0	logfile
✔	6Qi8	4552	2024-09-27	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.004	0.90	0.0	0.05	17.87	0.01	2.185	14.58	2.35	7.5	92.5	0.0	-2.50	1.54	0.32	0.22	0.55	14789	1907	12	0	6	0	0	logfile
✔	7ELA	31178	2024-09-26	2021-04-09	3.4	3.44	—	3.4	0.003	0.57	0.0	0.04	15.71	0.00	2.153	11.82	2.79	7.9	92.1	0.0	-2.61	0.72	0.78	2.61	3.4	0.003	0.65	0.0	0.04	16.91	0.00	2.371	10.71	2.72	6.9	93.1	0.0	-0.21	0.48	0.73	0.82	2.23	11791	1451	5	7	3	0	0	logfile
✔	6Z8K	11118	2024-09-28	2020-06-02	3.02	3.35	—	3.1	0.009	0.96	0.0	0.06	12.85	0.01	1.496	8.84	1.76	5.7	94.0	0.3	-3.52	0.84	0.85	4.26	3.1	0.003	0.58	0.0	0.04	15.08	0.00	1.967	6.85	1.46	4.6	95.4	0.0	0.72	1.02	0.85	0.89	3.28	18587	2158	7	45	2	0	0	logfile
✔	6HYP	0309	2024-09-26	2018-10-22	4.4	4.53	—	4.4	0.003	0.72	0.0	0.05	8.72	0.00	1.943	1.67	0.34	7.3	92.2	0.4	-5.99	0.75	0.69	—	4.4	0.004	0.79	0.0	0.04	8.75	0.00	2.438	3.74	0.00	12.8	87.0	0.1	-1.46	0.62	0.77	0.74	—	12392	2082	2	0	192	0	0	logfile
✔	7RU0	24692	2024-09-27	2021-08-16	4.3	3.77	—	4.2	0.005	1.13	0.0	0.06	14.47	0.01	2.146	8.30	0.00	6.9	93.1	0.0	-3.06	0.48	0.48	—	4.2	0.003	0.87	0.0	0.04	14.36	0.01	2.274	10.74	0.00	5.7	94.3	0.0	-0.75	0.99	0.61	0.62	—	12284	1536	8	0	4	0	0	logfile
✔	6o7H	0641	2024-09-28	2019-03-07	2.9	3.03	—	3.0	0.006	1.10	0.0	0.07	14.23	0.01	1.596	11.46	1.21	5.3	94.6	0.1	-4.34	0.74	0.81	3.78	3.0	0.003	0.66	0.0	0.04	17.92	0.00	2.448	6.70	2.05	4.4	95.6	0.0	-0.41	1.32	0.76	0.86	3.02	17576	2038	14	51	96	0	0	logfile
✔	6W8N	21575	2024-09-23	2020-03-20	3.2	3.39	—	3.3	0.007	0.77	0.0	0.05	16.69	0.00	2.244	12.74	8.14	7.1	92.9	0.0	-2.74	0.61	0.85	1.84	3.3	0.003	0.66	0.0	0.04	16.91	0.00	2.404	9.37	5.73	4.3	95.7	0.0	0.75	0.91	0.58	0.85	2.34	6160	804	2	0	0	0	0	logfile
✔	8ASi	15616	2024-09-27	2022-08-19	2.9	2.71	2.83	2.9	0.009	1.27	0.0	0.05	20.47	0.01	1.929	5.10	0.00	2.5	97.4	0.1	-0.83	0.54	0.77	4.04	2.9	0.003	0.68	0.0	0.04	18.50	0.00	2.484	5.38	1.74	1.9	98.1	0.0	1.26	0.54	0.59	0.82	3.01	14720	1789	14	0	21	0	0	logfile
✔	5YYS	6859	2024-09-30	2017-12-11	4.2	4.57	—	4.1	0.016	2.27	0.0	0.10	15.30	0.01	2.201	22.76	2.34	27.3	70.1	2.6	-5.98	0.85	0.71	—	4.1	0.005	1.24	0.0	0.06	13.00	0.01	2.314	34.01	0.00	23.9	75.6	0.5	-3.94	1.67	0.87	0.73	—	24044	3244	4	0	0	0	0	logfile
✔	7Uo1	26637	2024-09-27	2022-04-12	3.2	3.31	—	3.3	0.002	4.43	0.0	0.10	31.57	0.00	1.799	11.73	0.00	4.5	92.7	2.7	0.03	0.51	0.54	2.38	3.2	0.004	1.86	0.0	0.24	31.18	0.01	2.029	15.50	4.08	5.5	94.5	0.0	-0.22	1.81	0.57	0.65	1.50	16588	112	4	455	10	0	5894	logfile
✔	6Qi9	4553	2024-09-27	2019-01-18	4.63	4.71	—	4.6	0.007	1.09	0.0	0.06	17.10	0.01	1.993	10.33	0.39	9.0	91.0	0.0	-4.28	0.82	0.82	—	4.6	0.003	0.77	0.0	0.05	15.35	0.00	2.364	10.81	0.00	5.8	94.2	0.0	-1.38	0.80	0.82	0.81	—	14559	1879	11	0	5	0	0	logfile
✔	5Z1F	6875	2024-09-24	2017-12-26	4.8	4.85	4.58	4.8	0.006	0.87	0.0	0.05	13.13	0.01	2.213	25.36	5.04	9.8	89.2	1.0	-4.90	0.60	0.76	—	4.8	0.003	0.79	0.0	0.04	11.65	0.01	2.425	12.31	0.00	6.5	93.5	0.0	-0.03	1.75	0.59	0.77	—	8480	1202	2	0	0	0	0	logfile

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