Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8S9U	40249	2024-09-29	2023-03-30	2.77	2.95	2.82	2.9	0.010	0.93	0.0	0.06	16.42	0.01	2.099	5.43	1.33	3.7	96.0	0.3	-1.32	0.83	0.86	4.80	2.9	0.003	0.64	0.0	0.04	18.18	0.00	2.423	7.28	1.90	2.4	97.5	0.1	0.62	2.10	0.82	0.87	3.71	22604	2684	7	70	0	0	0	logfile
✔	8oQi	17111	2024-09-23	2023-04-12	3.1	3.09	2.34	3.3	0.013	2.01	0.0	0.11	18.29	0.01	2.465	9.18	2.63	0.0	100.0	0.0	0.22	0.51	0.84	3.31	3.3	0.003	0.58	0.0	0.05	17.02	0.00	2.641	3.75	4.21	2.2	97.8	0.0	-1.72	1.22	0.52	0.87	4.11	3810	560	10	0	0	0	0	logfile
✔	8GBR	29920	2024-09-23	2023-02-28	3.4	3.85	1.72	3.9	0.004	0.59	0.0	0.05	13.84	0.01	2.120	3.17	0.00	1.1	98.9	0.0	-2.35	0.56	0.83	4.22	4.0	0.005	0.78	0.0	0.05	14.29	0.00	2.537	6.34	4.30	7.9	92.1	0.0	-2.79	2.32	0.49	0.78	4.18	3630	465	5	0	0	0	0	logfile
✔	8JP6	36469	2024-09-26	2023-06-10	3.29	3.43	3.30	3.3	0.003	0.59	0.0	0.05	16.63	0.00	1.720	4.45	0.14	3.8	96.2	0.0	0.12	0.82	0.85	3.09	3.4	0.004	0.73	0.0	0.05	17.74	0.00	2.051	7.04	1.73	4.4	95.6	0.0	-0.05	0.61	0.83	0.87	2.95	13500	1678	16	0	20	0	0	logfile
✔	8R33	18859	2024-09-24	2023-11-08	2.29	2.45	2.30	2.4	0.003	0.56	0.0	0.04	18.61	0.00	2.171	8.27	2.39	2.0	98.0	0.0	1.52	0.67	0.86	4.80	2.4	0.003	0.59	0.0	0.04	17.47	0.00	2.573	6.41	1.01	2.0	98.0	0.0	2.35	0.25	0.66	0.86	4.50	8066	978	6	0	8	328	0	logfile
✔	8G7A	29804	2024-09-27	2023-02-16	3.3	3.59	3.42	3.5	0.006	0.83	0.0	0.05	13.26	0.01	1.778	23.01	0.67	4.1	95.7	0.2	-1.47	0.51	0.54	2.53	3.5	0.004	0.65	0.0	0.05	14.63	0.00	2.379	8.52	2.56	4.3	95.6	0.1	-1.23	0.97	0.63	0.69	2.52	16237	2046	8	0	2	0	0	logfile
✔	8XS0	38612	2024-09-25	2024-01-08	3.89	4.15	4.00	4.1	0.004	0.84	0.0	0.05	12.99	0.01	2.158	13.17	0.00	13.6	86.3	0.1	-0.93	0.67	0.80	2.30	4.0	0.003	0.79	0.0	0.04	15.31	0.01	2.429	9.89	2.86	11.1	88.7	0.1	-0.17	0.53	0.67	0.79	1.74	10353	1388	2	0	0	0	0	logfile
✔	8J6F	36003	2024-09-23	2023-04-25	3.3	3.50	3.25	3.5	0.009	1.06	0.0	0.06	14.30	0.01	2.208	7.88	0.00	9.8	90.2	0.0	-3.18	0.64	0.73	2.32	3.5	0.004	0.73	0.0	0.04	15.98	0.01	2.563	13.00	3.19	9.2	90.8	0.0	-2.25	0.40	0.64	0.76	2.55	3870	496	5	0	1	0	0	logfile
✔	8QGT	18390	2024-09-25	2023-09-05	2.8	2.87	2.76	2.8	0.004	0.56	0.0	0.04	16.98	0.00	2.214	7.89	0.88	3.1	96.9	0.0	0.98	0.78	0.83	2.93	2.8	0.003	0.55	0.0	0.04	17.68	0.00	2.394	5.96	2.11	3.0	97.0	0.0	1.24	0.81	0.79	0.88	3.45	10635	1289	2	12	0	0	0	logfile
✔	8iEi	35382	2024-09-23	2023-02-15	2.62	2.17	2.60	2.0	0.007	0.80	0.0	0.04	14.11	0.01	2.227	2.71	0.00	3.8	96.2	0.0	3.06	0.74	0.78	2.44	2.0	0.003	0.55	0.0	0.04	15.73	0.01	2.530	5.21	1.01	3.1	96.9	0.0	4.11	1.04	0.78	0.82	2.96	4469	563	4	0	2	0	0	logfile
✔	8T53	41042	2024-09-24	2023-06-12	4.1	4.29	4.68	4.1	0.002	0.59	0.0	0.04	12.60	0.00	2.201	11.96	0.00	1.8	98.2	0.0	0.81	0.45	0.45	—	4.2	0.002	0.63	0.0	0.04	13.48	0.00	2.545	9.12	0.00	2.2	97.8	0.0	1.57	0.61	0.44	0.40	—	6660	796	2	0	0	0	0	logfile
✔	8AN1	15529	2024-09-23	2022-08-04	3.93	4.18	3.94	4.0	0.002	0.47	0.0	0.04	11.04	0.00	2.168	6.31	3.10	3.4	96.5	0.1	1.42	0.83	0.81	1.35	4.0	0.003	0.65	0.0	0.04	14.12	0.00	2.100	6.18	2.73	4.2	95.7	0.1	0.92	1.17	0.83	0.80	1.21	47790	6255	18	0	0	0	0	logfile
✔	8TNY	41429	2024-09-24	2023-08-02	3.55	3.95	3.71	3.9	0.006	0.86	0.0	0.05	17.95	0.00	2.118	12.14	5.02	5.3	94.6	0.2	0.96	0.61	0.81	1.85	3.9	0.004	0.64	0.0	0.04	17.33	0.00	2.563	7.26	6.13	4.0	96.0	0.0	1.74	1.06	0.63	0.83	1.83	8026	1090	4	0	2	0	0	logfile
✔	8TNX	41428	2024-09-24	2023-08-02	3.03	3.42	3.12	3.4	0.007	0.90	0.0	0.06	16.34	0.02	2.278	7.41	4.12	2.8	96.8	0.4	0.06	0.59	0.80	2.75	3.4	0.003	0.58	0.0	0.04	14.96	0.00	2.584	4.20	3.38	2.0	98.0	0.0	1.75	0.94	0.55	0.81	3.00	8272	1152	4	0	2	0	0	logfile
✔	8V4N	42974	2024-09-23	2023-11-29	2.43	2.63	2.50	2.6	0.002	0.49	0.0	0.04	14.21	0.00	2.260	4.14	0.93	2.3	97.7	0.0	0.80	0.31	0.85	3.24	2.6	0.003	0.58	0.0	0.04	17.37	0.00	2.658	1.71	1.87	2.3	97.7	0.0	0.71	1.01	0.31	0.87	3.49	2067	263	1	0	0	0	0	logfile
✔	8SHS	40493	2024-09-27	2023-04-14	2.66	3.50	2.78	3.3	0.002	0.42	0.0	0.04	8.94	0.00	2.309	5.02	0.50	1.2	98.8	0.0	1.56	0.85	0.81	3.60	3.3	0.003	0.49	0.0	0.04	13.66	0.00	2.491	3.09	0.32	1.9	98.1	0.0	1.61	0.46	0.78	0.84	3.63	15156	1976	4	0	0	0	0	logfile
✔	8J9V	36116	2024-09-26	2023-05-05	2.71	3.58	2.71	3.1	0.003	0.59	0.0	0.04	15.16	0.00	2.053	8.83	0.00	4.1	95.9	0.0	0.57	0.90	0.87	3.12	3.1	0.005	0.62	0.0	0.04	16.23	0.00	2.003	8.17	0.88	4.4	95.6	0.0	0.82	0.89	0.90	0.88	3.05	13918	1556	10	60	4	0	0	logfile
✔	8SPR	40682	2024-09-27	2023-05-03	3.9	4.25	3.99	4.1	0.007	0.88	0.0	0.05	15.12	0.01	2.032	21.51	0.32	17.6	82.2	0.2	-5.91	0.74	0.82	2.09	4.1	0.003	0.72	0.0	0.04	16.61	0.00	2.449	10.54	2.27	9.7	90.2	0.1	-2.73	1.22	0.72	0.79	1.33	15032	1932	6	0	0	0	0	logfile
✔	9BH9	44537	2024-09-26	2024-04-19	3.5	3.53	3.42	3.5	0.003	0.68	0.0	0.05	15.03	0.01	2.362	1.75	0.07	0.6	99.4	0.0	-2.11	0.72	0.76	2.80	3.5	0.003	0.66	0.0	0.04	17.76	0.00	2.524	6.81	1.47	1.9	98.1	0.0	0.87	2.06	0.74	0.76	1.60	13155	1574	4	50	0	0	0	logfile
✔	8UC3	42114	2024-09-23	2023-09-25	2.78	3.15	2.78	3.1	0.005	0.85	0.0	0.05	16.43	0.01	2.115	12.15	1.78	4.0	96.0	0.0	0.37	0.52	0.72	1.94	3.1	0.003	0.63	0.0	0.04	16.98	0.01	2.621	6.25	2.67	2.2	97.8	0.0	1.59	1.03	0.51	0.74	1.60	4304	556	6	0	2	0	0	logfile

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