Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8AWT	15696	2024-09-23	2022-08-30	3.0	3.11	2.92	3.1	0.003	0.47	0.0	0.04	9.30	0.00	2.671	4.07	0.00	0.0	100.0	0.0	-4.11	0.52	0.86	6.78	3.1	0.006	0.55	0.0	0.04	10.29	0.00	2.287	0.00	0.00	2.9	97.1	0.0	-4.06	1.02	0.53	0.89	6.78	1910	260	20	0	10	0	0	logfile
✔	8G0C	29653	2024-09-28	2023-01-31	2.8	3.69	2.84	2.8	0.005	0.63	0.0	0.21	9.61	0.00	1.814	0.39	0.00	2.6	97.3	0.0	0.98	0.69	0.67	—	2.8	0.005	0.72	0.0	0.04	7.14	0.00	1.780	0.16	0.00	6.9	93.1	0.0	1.70	1.18	0.79	0.80	—	19874	4860	30	0	16	0	0	logfile
✔	8CG3	16628	2024-09-23	2023-02-03	2.39	2.55	2.34	2.5	0.012	1.69	0.0	0.08	14.77	0.01	2.619	1.73	0.00	2.3	97.7	0.0	-4.90	0.52	0.96	8.23	2.5	0.005	0.94	0.0	0.04	16.12	0.00	2.645	0.17	0.00	2.3	97.7	0.0	-4.82	0.29	0.51	0.94	7.55	3040	445	5	0	0	0	0	logfile
✔	8G08	29649	2024-09-28	2023-01-31	2.8	3.66	2.85	3.1	0.005	0.63	0.0	0.23	7.67	0.00	1.824	0.59	0.00	2.4	97.6	0.0	1.01	0.74	0.70	—	3.3	0.006	0.74	0.0	0.03	6.65	0.00	1.693	0.20	0.00	7.4	92.6	0.0	1.41	1.56	0.82	0.81	—	19595	4859	26	0	10	0	0	logfile
✔	8DXQ	27773	2024-09-25	2022-08-02	3.8	4.02	3.81	3.9	0.002	0.52	0.0	0.04	4.66	0.00	2.301	1.14	0.00	10.1	89.9	0.0	0.26	0.65	0.71	—	3.9	0.003	0.60	0.0	0.04	5.08	0.00	2.517	0.20	0.00	10.4	89.6	0.0	0.07	0.31	0.64	0.69	—	10435	2101	7	0	0	0	0	logfile
✔	7MJP	23881	2024-09-27	2021-04-20	4.2	4.40	—	4.3	0.008	1.11	0.0	0.07	10.54	0.01	1.477	2.76	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.3	0.002	0.62	0.0	0.05	8.32	0.00	2.518	0.24	0.00	7.4	92.6	0.0	-0.39	1.34	0.55	0.68	—	14163	2818	10	0	8	0	0	logfile
✔	8AZ0	15728	2024-09-23	2022-09-05	3.4	3.10	3.36	3.6	0.006	0.74	0.0	0.05	8.05	0.01	2.611	0.94	0.00	7.7	92.3	0.0	-4.46	0.50	0.87	5.60	3.6	0.003	0.51	0.0	0.04	11.54	0.00	2.272	0.24	2.08	5.8	94.2	0.0	-5.01	0.50	0.46	0.85	4.92	2180	280	20	0	10	0	0	logfile
✔	7JG6	22312	2024-09-28	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.004	0.91	0.0	0.00	6.00	0.00	2.539	0.24	0.00	11.6	88.4	0.0	-1.02	1.66	0.71	0.69	—	19320	4819	20	0	11	0	0	logfile
✔	7ZiR	14738	2024-09-23	2022-04-08	2.5	2.51	2.04	2.7	0.002	0.34	0.0	0.03	9.02	0.00	2.317	1.65	0.00	2.0	98.0	0.0	-3.82	0.48	0.90	7.46	2.7	0.004	0.48	0.0	0.04	12.22	0.00	2.650	0.28	0.56	2.4	97.6	0.0	-3.90	1.02	0.51	0.93	7.99	2120	255	10	0	0	50	0	logfile
✔	7JG8	22314	2024-09-28	2020-07-18	3.3	2.35	3.37	3.3	0.009	1.50	0.0	0.20	9.46	0.01	2.424	0.51	0.00	3.2	96.6	0.2	-1.30	0.62	0.55	—	3.4	0.004	0.87	0.0	0.08	6.87	0.00	2.539	0.28	0.00	9.4	90.5	0.1	-0.57	1.25	0.72	0.71	—	19573	4827	26	0	7	0	0	logfile
✔	8Q2K	18111	2024-09-24	2023-08-02	2.88	2.65	2.79	2.8	0.011	1.80	0.0	0.07	10.49	0.01	2.538	0.43	0.00	4.1	95.9	0.0	-1.81	0.28	0.75	5.37	2.8	0.002	0.50	0.0	0.05	17.14	0.00	2.574	0.28	1.26	0.2	99.8	0.0	-1.54	3.23	0.37	0.85	4.70	7032	450	6	0	0	0	3588	logfile
✔	8Q9i	18282	2024-09-23	2023-08-20	2.56	2.01	2.38	2.2	0.011	1.80	0.0	0.08	11.44	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-1.34	0.29	0.75	7.51	2.3	0.003	0.57	0.0	0.05	16.84	0.00	2.517	0.29	0.52	1.4	98.6	0.0	-1.69	1.47	0.37	0.86	7.83	3411	219	3	0	0	0	1740	logfile
✔	8PPo	17806	2024-09-23	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.55	0.0	0.06	13.87	0.00	2.638	0.29	1.04	0.0	100.0	0.0	1.16	0.37	0.50	0.88	5.79	1696	240	16	0	0	0	0	logfile
✔	6UVS	20915	2024-09-27	2019-11-04	4.2	4.33	—	4.2	0.010	1.17	0.0	0.06	9.04	0.01	2.148	2.19	0.00	16.0	84.0	0.0	-4.91	0.68	0.79	—	4.2	0.003	0.64	0.0	0.04	9.33	0.00	2.524	0.35	0.00	9.5	90.5	0.0	1.58	0.84	0.73	0.85	—	17040	1920	12	0	0	0	5976	logfile
✔	7QV5	14167	2024-09-23	2022-01-19	3.0	3.03	1.88	3.0	0.010	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.37	0.0	0.06	12.18	0.00	2.260	0.36	0.00	0.7	99.3	0.0	-2.06	0.88	0.50	0.89	6.33	5562	342	45	0	18	0	2997	logfile
✔	6SH4	10193	2024-09-26	2019-08-05	4.4	4.48	—	4.3	0.005	1.01	0.0	0.07	5.13	0.00	2.405	2.99	0.00	6.8	92.4	0.8	-2.94	0.72	0.77	—	4.3	0.003	0.70	0.0	0.04	4.38	0.00	2.612	0.37	0.00	7.8	92.2	0.0	0.03	2.27	0.74	0.83	—	12957	2632	7	0	0	0	0	logfile
✔	8G0D	29654	2024-09-28	2023-01-31	2.9	3.84	3.02	2.9	0.006	0.65	0.0	0.21	9.52	0.00	1.844	0.67	0.00	2.6	97.3	0.0	0.74	0.68	0.65	—	2.9	0.004	0.71	0.0	0.05	7.67	0.00	1.786	0.39	0.00	7.1	92.8	0.0	1.37	1.61	0.80	0.81	—	19874	4860	30	0	16	0	0	logfile
✔	8Q9M	18286	2024-09-24	2023-08-20	2.65	2.53	2.47	2.7	0.011	1.76	0.0	0.09	11.56	0.01	2.640	0.28	0.00	1.8	98.2	0.0	-1.02	0.33	0.79	6.36	2.6	0.003	0.53	0.0	0.05	15.39	0.00	2.505	0.43	1.01	0.9	99.1	0.0	-1.49	1.18	0.41	0.90	6.22	7032	450	6	0	0	0	3588	logfile
✔	8Q9H	18281	2024-09-24	2023-08-20	2.18	2.03	2.10	2.2	0.011	1.73	0.0	0.08	10.93	0.01	2.517	0.00	0.00	2.8	97.2	0.0	-1.19	0.33	0.77	6.36	2.2	0.003	0.58	0.0	0.05	15.97	0.00	2.395	0.44	0.26	1.9	98.1	0.0	-1.76	1.80	0.41	0.86	6.33	6822	438	6	0	0	0	3480	logfile
✔	8Q8W	18263	2024-09-24	2023-08-19	2.85	2.92	2.74	2.9	0.011	1.75	0.0	0.09	11.10	0.01	2.483	0.00	0.00	2.9	97.1	0.0	-1.38	0.29	0.78	6.35	2.9	0.002	0.49	0.0	0.05	15.80	0.00	2.527	0.45	1.08	0.7	99.3	0.0	-0.68	1.98	0.39	0.89	6.48	6618	429	6	0	0	0	3372	logfile

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