Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8F0A	28754	2024-09-28	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	3.4	0.003	0.71	0.0	0.05	14.01	0.00	2.317	5.56	0.53	1.0	99.0	0.0	1.19	1.39	0.72	0.77	3.69	18060	1212	9	0	0	0	9189	logfile
✔	8AVB	15677	2024-09-27	2022-08-26	4.43	5.51	4.88	4.3	0.005	0.81	1.0	0.05	11.64	0.01	2.142	17.52	0.00	4.4	95.4	0.2	-0.47	0.81	0.63	—	4.2	0.003	0.67	0.0	0.05	12.56	0.01	2.338	20.46	0.00	6.2	93.7	0.1	-1.09	1.63	0.81	0.67	—	10591	1326	3	0	0	0	0	logfile
✔	6XMT	22263	2024-09-24	2020-06-30	3.3	3.96	3.42	3.7	0.004	0.61	0.0	0.04	12.44	0.00	1.814	7.30	0.00	4.5	95.5	0.0	-2.38	0.72	0.82	2.61	3.8	0.006	0.64	0.0	0.04	14.33	0.00	1.793	5.55	1.93	5.1	94.9	0.0	0.49	0.43	0.72	0.86	2.00	8324	1092	2	0	2	0	0	logfile
✔	8G6o	29776	2024-09-26	2023-02-15	3.1	2.98	3.00	3.1	0.004	0.69	0.0	0.04	17.30	0.00	2.107	3.87	0.00	2.4	97.6	0.0	1.88	0.47	0.78	2.94	3.1	0.002	0.48	0.0	0.04	17.68	0.00	2.179	3.65	0.70	2.7	97.3	0.0	2.60	0.30	0.47	0.80	2.72	13132	845	5	0	0	0	6522	logfile
✔	5XSY	6770	2024-09-25	2017-06-15	4.0	4.10	3.89	4.0	0.011	1.55	12.0	0.08	18.88	0.02	1.735	31.93	7.45	6.6	91.8	1.5	-3.53	0.46	0.74	—	4.0	0.003	0.80	0.0	0.04	16.43	0.00	2.475	10.47	4.58	5.9	93.5	0.5	-0.23	0.91	0.53	0.79	—	10634	1312	7	0	16	0	0	logfile
✔	7ZKP	14764	2024-09-29	2022-04-13	3.2	3.49	3.33	3.5	0.004	0.73	1.0	0.04	15.30	0.00	2.119	11.26	0.09	4.3	95.5	0.2	0.98	0.63	0.71	1.48	3.5	0.004	0.62	0.0	0.04	16.73	0.00	2.401	7.60	2.67	4.4	95.4	0.1	1.73	0.92	0.68	0.83	1.57	19929	2451	19	0	6	0	0	logfile
✔	7S8U	24922	2024-09-23	2021-09-19	3.7	3.97	—	3.9	0.008	1.19	1.0	0.07	14.00	0.01	2.243	13.10	4.56	8.3	90.5	1.2	-1.14	0.48	0.59	0.59	3.9	0.003	0.82	0.0	0.05	16.79	0.00	2.522	14.35	4.21	9.2	90.7	0.2	-0.39	1.35	0.51	0.61	0.40	5210	667	1	0	0	0	0	logfile
✔	7RU6	24698	2024-09-23	2021-08-16	4.4	4.33	3.79	4.2	0.003	0.59	0.0	0.04	15.25	0.00	2.027	10.32	0.00	0.3	99.7	0.0	3.15	0.71	0.67	—	4.2	0.003	0.53	0.0	0.03	12.87	0.00	2.486	7.00	0.00	1.3	98.7	0.0	3.51	0.77	0.74	0.71	—	5426	331	2	0	0	0	2725	logfile
✔	7RGQ	24454	2024-09-26	2021-07-15	3.9	3.65	—	3.7	0.013	1.97	9.0	0.09	19.50	0.01	2.357	2.12	2.74	6.9	92.4	0.7	-1.98	0.56	0.81	3.07	3.7	0.005	0.67	0.0	0.04	18.57	0.00	2.305	8.83	1.98	6.4	93.6	0.0	-0.94	1.77	0.55	0.81	2.42	59832	3848	16	0	40	0	29544	logfile
✘	7WYB	32890	2024-09-24	2022-02-15	2.97	2.33	—	2.1	0.005	0.80	0.0	0.05	12.35	0.00	2.176	5.06	0.00	7.0	93.0	0.0	-1.33	0.66	0.61	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8757	1115	5	0	0	0	0	logfile
✔	7VX8	32171	2024-09-24	2021-11-12	2.8	3.10	—	3.1	0.013	1.23	4.0	0.06	15.86	0.01	1.995	7.41	1.06	4.9	95.1	0.0	-3.11	0.68	0.84	4.23	3.1	0.003	0.61	0.0	0.04	17.44	0.00	2.086	4.86	1.59	2.5	97.5	0.0	0.26	1.14	0.58	0.80	3.87	9018	1120	4	0	4	0	0	logfile
✔	7F1S	31424	2024-09-24	2021-06-09	2.8	3.44	—	3.2	0.002	0.55	0.0	0.04	10.91	0.00	2.228	9.48	0.00	3.5	96.5	0.0	-1.65	0.69	0.76	1.35	3.2	0.004	0.73	0.0	0.04	14.93	0.00	2.485	11.39	2.68	3.1	96.9	0.0	-0.04	1.17	0.70	0.81	2.25	6209	847	4	0	0	0	0	logfile
✔	6M49	30074	2024-09-23	2020-03-06	3.7	4.45	—	4.4	0.008	0.85	0.0	0.05	14.05	0.01	2.079	14.80	0.98	7.1	92.6	0.2	-4.00	0.46	0.70	1.15	4.4	0.003	0.84	0.0	0.04	16.48	0.00	2.595	7.15	4.26	2.0	98.0	0.0	2.12	3.42	0.47	0.72	1.33	3098	420	3	0	1	0	0	logfile
✔	8oHS	16884	2024-09-26	2023-03-21	4.1	4.12	3.94	4.0	0.009	1.09	0.0	0.08	14.89	0.00	0.697	2.69	0.41	4.5	95.5	0.0	-1.04	0.47	0.78	—	4.0	0.004	0.70	0.0	0.04	13.60	0.00	2.181	6.08	0.07	1.9	98.1	0.0	1.11	2.07	0.51	0.87	—	13335	1758	9	0	0	0	0	logfile
✔	6L42	0828	2024-09-27	2019-10-15	3.4	3.83	—	3.7	0.013	3.32	109.0	0.17	16.55	0.02	1.223	41.56	6.61	11.4	86.6	2.0	-5.16	0.79	0.75	1.25	3.7	0.003	0.88	0.0	0.05	16.78	0.01	2.084	9.82	2.45	10.8	89.0	0.3	-2.53	0.81	0.82	0.83	1.44	14827	1864	2	0	1	0	0	logfile
✔	7VV0	32133	2024-09-23	2021-11-04	3.5	3.69	—	3.7	0.010	1.49	1.0	0.09	14.05	0.01	2.007	11.04	2.93	4.5	95.5	0.0	-3.44	0.65	0.80	1.76	3.7	0.003	0.62	0.0	0.04	15.22	0.00	2.590	9.02	4.18	3.4	96.6	0.0	2.51	1.29	0.63	0.80	1.22	2175	268	3	0	1	0	0	logfile
✔	6XWR	10636	2024-09-25	2020-01-24	3.22	3.96	—	3.7	0.008	0.75	0.0	0.05	12.81	0.00	2.122	11.13	0.00	5.7	94.3	0.0	-2.71	0.74	0.85	2.44	3.7	0.004	0.99	1.0	0.05	14.04	0.00	1.867	11.94	0.70	2.7	97.3	0.0	1.12	1.14	0.70	0.83	1.33	9564	1278	3	0	0	0	0	logfile
✔	7ADZ	11734	2024-09-28	2020-09-17	2.5	2.56	—	2.5	0.015	1.54	0.0	0.09	11.19	0.01	1.343	4.44	0.08	2.0	98.0	0.0	-0.11	0.64	0.85	4.72	2.5	0.003	0.73	3.0	0.05	16.24	0.00	2.084	2.67	2.07	2.6	97.4	0.0	0.53	0.65	0.66	0.88	4.13	67794	8508	30	0	0	0	0	logfile
✔	7XAV	33100	2024-09-24	2022-03-19	2.87	3.03	2.89	3.1	0.009	1.05	0.0	0.06	14.14	0.01	1.494	7.90	0.71	8.3	91.7	0.0	-4.66	0.63	0.77	2.98	3.1	0.003	0.69	0.0	0.04	16.08	0.00	2.408	8.39	3.29	5.4	94.6	0.0	-1.53	0.59	0.60	0.76	2.64	8410	1140	7	0	1	0	0	logfile
✔	7TKM	25974	2024-09-28	2022-01-17	4.5	7.58	4.88	4.3	0.019	2.22	0.0	0.00	6.78	0.01	2.385	0.12	0.00	4.3	94.2	1.5	-0.44	0.59	0.59	—	4.3	0.003	0.78	0.0	0.00	5.11	0.00	2.272	2.00	0.00	7.9	91.8	0.3	0.14	1.51	0.82	0.82	—	20227	5056	27	0	0	0	0	logfile

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