Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7EK2	31166	2024-09-26	2021-04-03	2.7	2.78	2.66	2.7	0.017	1.77	0.0	0.08	13.89	0.01	2.244	3.05	0.99	0.9	99.1	0.0	0.00	0.58	0.80	3.67	2.8	0.007	0.70	0.0	0.05	16.34	0.01	2.491	2.79	2.11	1.7	98.3	0.0	1.46	0.38	0.71	0.87	3.09	13540	1705	5	0	0	0	0	logfile
✔	7MXY	24076	2024-09-29	2021-05-19	2.18	2.49	—	2.5	0.006	0.66	0.0	0.04	18.00	0.00	2.195	11.50	3.20	3.3	96.7	0.0	1.25	0.50	0.66	2.36	2.4	0.006	0.65	0.0	0.04	18.20	0.00	2.374	13.48	4.84	4.4	95.6	0.0	0.54	1.12	0.53	0.69	2.55	22265	1406	12	0	5	2	11129	logfile
✔	7DHi	30681	2024-09-24	2020-11-15	3.26	3.41	—	3.3	0.004	0.76	0.0	0.05	14.53	0.01	2.298	4.37	0.13	5.6	94.4	0.0	-5.36	0.77	0.84	3.51	3.4	0.002	0.58	0.0	0.04	16.33	0.00	2.498	6.00	3.13	4.7	95.3	0.0	-0.93	1.11	0.77	0.85	2.85	7799	1019	7	0	1	2	0	logfile
✔	7RUG	24705	2024-09-23	2021-08-17	4.7	5.03	4.07	4.8	0.003	0.50	0.0	0.04	12.58	0.00	1.920	12.90	0.00	1.6	98.4	0.0	3.26	0.59	0.66	—	4.8	0.003	0.51	0.0	0.04	13.15	0.00	2.414	10.32	0.00	1.6	98.4	0.0	2.98	1.63	0.59	0.66	—	5429	331	2	0	0	0	2728	logfile
✔	5UVN	8608	2024-09-27	2017-02-20	3.96	4.04	—	4.0	0.012	1.13	0.0	0.06	7.90	0.01	2.013	20.37	0.40	8.5	90.9	0.6	-4.03	0.73	0.69	2.65	4.0	0.005	0.87	0.0	0.05	13.47	0.01	2.435	9.28	2.90	10.2	89.0	0.8	-2.11	1.48	0.82	0.83	2.97	16902	2214	12	0	282	0	0	logfile
✔	6SYT	10347	2024-09-28	2019-10-01	3.45	3.54	—	3.5	0.018	1.23	0.0	0.16	11.02	0.01	1.903	3.04	0.13	7.5	92.4	0.1	-5.37	0.69	0.81	4.11	3.5	0.003	0.63	0.0	0.04	14.36	0.00	1.962	4.81	2.20	3.9	96.1	0.0	0.91	1.24	0.71	0.85	2.50	18369	2369	9	0	216	0	0	logfile
✔	6NiY	9382	2024-09-24	2019-01-02	3.34	3.62	3.34	3.7	0.008	0.99	1.0	0.06	13.74	0.01	2.287	5.13	0.12	2.6	97.4	0.0	-0.93	0.70	0.76	2.70	3.7	0.003	0.65	0.0	0.04	16.54	0.00	2.437	7.93	3.68	2.8	97.2	0.0	0.31	0.68	0.73	0.79	1.99	7727	965	6	0	0	0	0	logfile
✔	6oG3	20051	2024-09-23	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.005	1.11	0.0	0.00	8.01	0.00	2.615	51.00	0.00	13.0	87.0	0.0	-1.64	2.16	0.67	0.87	—	1215	396	4	0	9	0	0	logfile
✔	7BSW	30169	2024-09-25	2020-03-31	3.9	3.97	—	3.9	0.005	1.22	0.0	0.21	16.59	0.01	1.719	37.17	0.69	7.4	92.6	0.0	-5.22	0.66	0.79	2.01	3.9	0.003	0.69	0.0	0.04	16.55	0.00	2.514	7.02	3.44	5.7	94.3	0.0	-1.29	0.62	0.66	0.81	1.57	9329	1139	4	0	7	0	0	logfile
✔	7UAF	26423	2024-09-28	2022-03-12	2.4	2.07	3.04	1.6	0.012	1.80	13.0	0.10	14.57	0.02	1.783	1.19	0.16	3.1	96.9	0.0	-0.18	0.80	0.80	5.45	1.6	0.005	0.67	0.0	0.05	16.08	0.00	1.875	5.67	2.53	3.4	96.6	0.0	-0.14	1.19	0.83	0.83	4.28	17864	2131	22	0	58	0	0	logfile
✔	7RP5	24612	2024-09-24	2021-08-03	3.72	3.93	—	3.9	0.005	1.01	0.0	0.05	14.74	0.01	2.346	4.77	0.46	5.7	94.3	0.0	-4.74	0.68	0.81	1.10	3.9	0.004	0.73	0.0	0.04	16.27	0.00	2.324	11.03	3.64	5.2	94.8	0.0	0.30	0.43	0.69	0.81	0.80	6578	883	2	0	0	0	0	logfile
✔	7N9W	24263	2024-09-24	2021-06-18	4.16	4.20	—	4.2	0.005	1.08	0.0	0.06	14.64	0.01	2.258	5.10	1.40	6.7	93.2	0.1	-5.14	0.63	0.77	—	4.1	0.003	0.74	0.0	0.04	13.86	0.00	2.431	10.96	0.00	6.4	93.6	0.0	-1.20	0.57	0.65	0.78	—	6561	890	2	0	0	0	0	logfile
✔	7MJo	23880	2024-09-29	2021-04-20	4.0	4.18	—	4.1	0.008	1.06	0.0	0.05	16.27	0.01	1.857	8.45	0.00	9.0	91.0	0.0	-1.30	0.57	0.76	—	4.1	0.003	0.63	0.0	0.04	15.64	0.00	2.404	5.73	3.21	6.0	94.0	0.0	0.15	2.38	0.57	0.76	—	19977	2981	13	0	25	0	0	logfile
✔	5ZQZ	6940	2024-09-27	2018-04-20	4.2	4.24	—	4.2	0.009	1.41	0.0	0.07	14.22	0.01	2.202	9.02	3.84	12.2	87.3	0.5	-4.96	0.78	0.80	—	4.2	0.004	0.86	0.0	0.05	13.31	0.00	2.430	13.07	0.00	9.6	90.4	0.0	-2.79	1.52	0.77	0.79	—	17174	2262	4	0	0	0	0	logfile
✔	6J5W	0683	2024-09-24	2019-01-12	3.7	3.66	—	3.7	0.008	1.21	0.0	0.07	11.81	0.01	2.236	5.67	0.89	11.0	88.5	0.4	-4.62	0.77	0.81	2.83	3.6	0.004	0.80	0.0	0.05	15.36	0.00	2.436	9.84	2.87	9.1	90.8	0.1	-1.58	0.68	0.77	0.80	2.22	8985	1122	3	0	1	0	0	logfile
✔	7MJQ	23882	2024-09-27	2021-04-20	4.2	4.29	—	4.2	0.009	1.55	0.0	0.15	11.99	0.01	1.552	6.01	0.00	9.4	90.6	0.0	-1.25	0.52	0.66	—	4.2	0.005	0.89	0.0	0.05	10.81	0.00	2.367	1.47	0.00	15.4	84.5	0.1	-2.10	1.84	0.60	0.76	—	14976	2982	13	0	10	0	0	logfile
✔	6WTZ	21900	2024-09-24	2020-05-04	3.15	3.04	—	3.1	0.004	0.84	0.0	0.05	15.73	0.00	2.301	2.97	5.70	6.5	93.5	0.0	-2.14	0.54	0.72	4.27	3.1	0.003	0.65	0.0	0.04	16.64	0.00	2.547	7.78	3.80	5.4	94.6	0.0	-1.06	0.52	0.64	0.78	3.04	7917	1020	6	0	0	36	0	logfile
✔	6XT9	10617	2024-09-27	2020-01-15	3.8	4.11	3.85	3.9	0.005	1.00	0.0	0.06	16.30	0.01	2.285	6.35	0.34	9.4	90.3	0.3	-5.57	0.83	0.79	1.19	3.9	0.004	0.78	0.0	0.04	17.22	0.00	2.472	10.38	2.75	8.8	91.1	0.1	-1.84	0.63	0.84	0.79	1.05	16916	2183	5	0	0	0	0	logfile
✔	7YAM	33717	2024-09-24	2022-06-28	3.3	3.46	3.26	3.4	0.003	0.53	0.0	0.04	14.47	0.00	1.756	6.05	0.13	1.6	98.4	0.0	1.95	0.70	0.80	2.17	3.4	0.004	0.55	0.0	0.04	16.09	0.00	1.900	6.12	1.74	2.0	98.0	0.0	2.09	0.46	0.69	0.82	2.08	6672	871	2	0	2	0	0	logfile
✔	7M3G	23654	2024-09-26	2021-03-18	2.5	2.29	—	1.8	0.007	0.96	0.0	0.06	17.28	0.01	2.281	2.21	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.003	0.60	0.0	0.04	17.04	0.00	2.302	3.13	2.72	3.7	96.3	0.0	0.14	0.34	0.85	0.87	3.49	13298	1627	11	0	41	0	0	logfile

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