Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6W18	21503	2024-09-26	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.72	0.00	2.196	4.75	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.2	0.003	0.73	0.0	0.04	12.85	0.00	2.382	6.54	0.09	7.2	92.8	0.0	-1.43	0.94	0.76	0.71	—	13151	1837	9	0	3	0	0	logfile
✔	6VX5	21430	2024-09-26	2020-02-21	3.03	3.58	—	3.5	0.006	0.80	0.0	0.05	14.27	0.00	2.348	4.97	0.00	3.3	96.7	0.0	-6.15	0.72	0.84	2.92	3.5	0.003	0.64	0.0	0.04	16.31	0.00	2.388	7.67	1.94	1.5	98.5	0.0	-0.51	0.95	0.68	0.80	2.31	13056	1575	6	0	1	0	0	logfile
✔	8CZi	27098	2024-09-23	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.19	0.00	2.450	4.09	1.01	0.0	100.0	0.0	5.82	0.85	0.82	0.84	2.06	2550	339	6	0	0	0	0	logfile
✘	7BW4	30226	2024-09-24	2020-04-13	3.7	3.92	—	3.8	0.004	0.66	1.0	0.05	15.16	0.00	2.078	16.25	1.68	4.3	95.5	0.2	-2.50	0.77	0.77	1.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8605	1078	5	0	2	0	0	logfile
✔	7WK1	32555	2024-09-25	2022-01-08	3.25	3.54	—	3.6	0.002	0.44	0.0	0.04	8.42	0.00	2.212	6.55	2.94	5.2	94.7	0.1	-4.01	0.65	0.76	1.98	3.5	0.003	0.61	0.0	0.04	13.48	0.00	2.445	9.72	3.21	5.9	94.0	0.1	0.04	0.79	0.70	0.84	1.54	10200	1330	4	0	2	0	0	logfile
✔	7Y00	33536	2024-09-26	2022-06-03	3.96	4.73	3.89	3.9	0.004	0.69	0.0	0.04	27.46	0.00	1.717	12.80	0.31	1.5	98.5	0.0	0.85	0.90	0.80	0.94	3.9	0.005	0.91	1.0	0.03	28.92	0.00	2.081	12.39	1.89	2.3	97.6	0.1	2.07	1.72	0.93	0.88	0.93	12411	762	10	310	0	0	0	logfile
✔	8PTH	17871	2024-09-28	2023-07-14	2.73	2.59	2.66	2.8	0.002	0.44	0.0	0.04	17.86	0.00	2.072	3.02	1.88	4.8	95.2	0.0	0.96	0.74	0.89	3.83	2.8	0.003	0.50	0.0	0.04	17.81	0.00	2.350	1.65	1.36	5.1	94.9	0.0	0.73	0.89	0.73	0.89	3.90	18236	1104	7	27	1	1	8991	logfile
✔	8USP	42510	2024-09-24	2023-10-28	3.3	4.27	—	4.0	0.003	0.66	8.0	0.04	14.46	0.00	1.875	7.99	0.15	3.0	97.0	0.0	1.03	0.80	0.79	0.78	4.0	0.003	0.64	0.0	0.04	16.23	0.00	2.373	8.08	1.70	3.1	96.9	0.0	1.34	0.45	0.83	0.83	1.05	47406	5892	6	0	0	0	0	logfile
✔	6LHW	0901	2024-09-26	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.28	0.0	0.04	6.20	0.00	2.244	9.56	0.00	0.0	0.0	0.0	—	2.92	0.85	0.76	—	7644	0	3	0	1541	0	0	logfile
✔	8APL	15574	2024-09-29	2022-08-10	4.1	3.88	4.12	3.8	0.002	0.48	0.0	0.04	9.13	0.00	2.213	10.27	1.93	3.1	96.9	0.0	0.14	0.76	0.73	—	3.7	0.003	0.65	0.0	0.04	11.35	0.00	2.297	14.75	0.12	2.5	97.5	0.0	-0.56	1.53	0.77	0.73	—	21888	2694	6	0	0	0	0	logfile
✔	7WZ3	32903	2024-09-26	2022-02-16	4.1	3.52	—	3.4	0.003	0.58	0.0	0.04	11.64	0.00	2.022	2.41	0.06	2.8	97.2	0.0	-4.27	0.62	0.51	—	3.4	0.003	0.69	0.0	0.04	13.29	0.00	2.146	11.46	0.02	3.8	96.2	0.0	-0.47	3.38	0.63	0.55	—	58551	7652	22	0	6	0	0	logfile
✔	7SMM	25202	2024-09-28	2021-10-26	2.5	2.86	—	2.7	0.006	0.78	0.0	0.05	16.09	0.00	2.099	3.47	0.00	4.1	95.9	0.0	1.36	0.80	0.86	4.48	2.7	0.003	0.51	0.0	0.04	15.02	0.00	2.460	4.29	1.12	2.6	97.4	0.0	1.88	0.31	0.81	0.88	3.96	17256	2030	20	0	39	63	0	logfile
✘	7SMS	25207	2024-09-28	2021-10-26	3.18	3.33	—	3.3	0.006	0.78	0.0	0.05	17.59	0.00	2.187	5.21	0.00	2.8	97.2	0.0	1.21	0.78	0.85	3.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17051	2015	15	0	32	0	0	logfile
✔	6Wi9	21683	2024-09-24	2020-04-09	4.3	4.37	4.24	4.3	0.002	0.50	0.0	0.04	12.85	0.00	2.214	5.38	0.00	4.2	95.8	0.0	-3.72	0.77	0.78	—	4.3	0.003	0.70	0.0	0.04	13.96	0.00	2.395	11.17	0.11	5.2	94.8	0.0	-0.70	0.72	0.78	0.78	—	8550	1108	6	0	0	0	0	logfile
✔	6UES	20755	2024-09-23	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	26.31	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.90	0.0	0.04	27.47	0.01	1.929	30.44	0.00	0.0	0.0	0.0	—	0.83	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	7K5K	22682	2024-09-30	2020-09-17	2.66	2.76	2.81	2.7	0.007	0.69	0.0	0.05	15.27	0.00	1.722	6.95	4.06	10.2	89.7	0.0	-3.21	0.79	0.85	4.74	2.7	0.005	0.63	0.0	0.05	15.91	0.00	2.010	5.48	2.34	7.7	92.3	0.0	-0.64	1.10	0.81	0.87	4.08	24224	3270	12	0	18	0	0	logfile
✔	7NS4	12560	2024-09-23	2021-03-05	3.9	3.81	3.79	3.8	0.006	0.79	0.0	0.05	14.40	0.00	2.116	9.17	0.00	10.8	89.2	0.0	-1.02	0.75	0.84	2.90	3.8	0.004	0.65	0.0	0.04	16.03	0.00	2.386	7.41	2.38	8.0	92.0	0.0	0.20	0.32	0.74	0.83	2.16	5465	698	4	0	2	0	0	logfile
✔	7ZR8	14886	2024-09-23	2022-05-03	3.7	3.81	3.43	3.8	0.003	0.46	0.0	0.04	8.42	0.00	2.181	7.02	0.74	3.9	96.1	0.0	-0.94	0.72	0.82	2.69	3.8	0.004	0.60	0.0	0.04	13.18	0.00	2.324	7.84	4.21	5.4	94.6	0.0	-1.04	0.49	0.72	0.82	2.00	3693	471	4	0	1	0	0	logfile
✔	6N7N	0359	2024-09-26	2018-11-27	3.5	3.55	—	3.5	0.006	0.99	0.0	0.06	14.77	0.00	1.975	4.24	0.74	5.5	94.5	0.0	-3.49	0.67	0.66	1.98	3.5	0.003	0.64	0.0	0.04	16.81	0.00	1.886	9.11	1.92	5.2	94.8	0.0	-1.13	1.68	0.69	0.70	1.59	12854	1608	12	15	10	0	0	logfile
✔	7XJA	33223	2024-09-24	2022-04-15	3.5	3.35	3.43	3.4	0.003	0.60	0.0	0.04	13.73	0.00	2.182	9.41	0.00	1.5	98.5	0.0	1.81	0.57	0.72	3.01	3.4	0.003	0.66	0.0	0.04	15.89	0.00	2.532	8.80	2.35	2.6	97.4	0.0	2.49	1.77	0.64	0.80	3.31	7276	944	2	0	0	0	0	logfile

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