Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6LY9	30015	2024-09-26	2020-02-13	3.93	3.98	—	3.9	0.006	0.75	0.0	0.04	14.60	0.00	2.195	21.56	1.05	7.3	92.7	0.0	-3.45	0.74	0.82	1.13	3.9	0.004	0.83	0.0	0.04	16.78	0.01	2.488	18.53	4.56	4.8	95.2	0.0	0.38	1.27	0.73	0.81	0.51	13888	1894	16	0	0	0	0	logfile
✔	7JNC	22404	2024-09-24	2020-08-04	3.73	3.33	—	3.7	0.005	0.68	0.0	0.04	13.56	0.00	2.032	17.30	0.52	5.1	94.9	0.0	-4.01	0.57	0.68	2.03	3.7	0.005	0.70	0.0	0.05	15.45	0.00	2.477	13.09	6.22	4.0	96.0	0.0	-1.01	1.91	0.65	0.76	3.51	6573	861	9	0	15	0	0	logfile
✔	8BPR	16164	2024-09-25	2022-11-17	3.65	4.06	3.85	3.9	0.004	0.51	0.0	0.04	17.51	0.00	2.072	3.39	0.66	3.0	97.0	0.0	0.86	0.78	0.76	1.72	3.9	0.003	0.62	0.0	0.04	18.51	0.00	1.968	5.69	2.48	3.2	96.8	0.0	1.86	3.76	0.80	0.80	1.40	10055	1401	14	44	7	0	0	logfile
✔	7MXY	24076	2024-09-29	2021-05-19	2.18	2.49	—	2.5	0.006	0.66	0.0	0.04	18.00	0.00	2.195	11.50	3.20	3.3	96.7	0.0	1.25	0.50	0.66	2.36	2.4	0.006	0.65	0.0	0.04	18.20	0.00	2.374	13.48	4.84	4.4	95.6	0.0	0.54	1.12	0.53	0.69	2.55	22265	1406	12	0	5	2	11129	logfile
✔	7TT1	26107	2024-09-28	2022-01-31	4.3	4.56	—	4.4	0.004	0.82	0.0	0.05	10.41	0.00	1.973	3.78	0.00	1.3	98.7	0.0	0.92	0.72	0.72	—	4.4	0.003	0.60	0.0	0.04	13.02	0.00	2.194	6.82	0.18	3.7	96.3	0.0	0.02	1.54	0.72	0.73	—	20398	1329	6	0	0	0	10005	logfile
✔	6YV1	10940	2024-09-23	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.76	1.48	3.7	0.003	0.67	0.0	0.04	14.34	0.00	2.552	5.48	1.11	2.2	97.8	0.0	1.02	0.62	0.50	0.86	1.20	2496	328	1	0	0	0	0	logfile
✔	7ELC	31180	2024-09-26	2021-04-09	3.1	3.22	—	3.2	0.003	0.55	0.0	0.04	15.03	0.00	2.198	9.93	2.73	9.3	90.7	0.1	-3.03	0.70	0.80	3.23	3.2	0.004	0.65	0.0	0.04	16.99	0.00	2.221	9.08	4.02	9.4	90.5	0.1	-0.78	0.43	0.67	0.80	2.96	11754	1458	5	7	5	0	0	logfile
✔	7MQi	23948	2024-09-29	2021-05-05	3.21	3.01	3.19	3.2	0.006	0.79	0.0	0.05	13.51	0.00	2.202	2.71	0.59	1.4	98.6	0.0	0.80	0.67	0.81	4.51	3.1	0.003	0.49	0.0	0.04	15.29	0.00	2.574	2.42	1.01	2.8	97.2	0.0	1.04	1.79	0.74	0.86	4.25	12696	1640	16	16	0	0	0	logfile
✔	6WTZ	21900	2024-09-24	2020-05-04	3.15	3.04	—	3.1	0.004	0.84	0.0	0.05	15.73	0.00	2.301	2.97	5.70	6.5	93.5	0.0	-2.14	0.54	0.72	4.27	3.1	0.003	0.65	0.0	0.04	16.64	0.00	2.547	7.78	3.80	5.4	94.6	0.0	-1.06	0.52	0.64	0.78	3.04	7917	1020	6	0	0	36	0	logfile
✔	7RUG	24705	2024-09-23	2021-08-17	4.7	5.03	4.07	4.8	0.003	0.50	0.0	0.04	12.58	0.00	1.920	12.90	0.00	1.6	98.4	0.0	3.26	0.59	0.66	—	4.8	0.003	0.51	0.0	0.04	13.15	0.00	2.414	10.32	0.00	1.6	98.4	0.0	2.98	1.63	0.59	0.66	—	5429	331	2	0	0	0	2728	logfile
✔	7KX9	23063	2024-09-26	2020-12-03	3.5	3.71	3.42	3.6	0.008	0.93	0.0	0.07	17.25	0.00	1.799	12.39	0.17	11.5	88.5	0.0	-3.70	0.81	0.80	2.84	3.6	0.003	0.69	0.0	0.07	17.78	0.00	1.813	5.48	1.17	6.3	93.7	0.0	-1.42	1.27	0.78	0.77	2.18	12424	734	4	40	2	0	5846	logfile
✔	7VFF	31951	2024-09-26	2021-09-13	4.1	3.76	3.90	4.0	0.007	0.72	0.0	0.05	13.87	0.00	2.334	2.40	0.41	3.6	96.4	0.0	-0.82	0.79	0.82	—	3.9	0.003	0.59	0.0	0.05	13.94	0.00	2.534	4.04	0.00	2.6	97.3	0.1	0.18	1.45	0.77	0.84	—	12579	1581	3	0	0	0	0	logfile
✔	7R9U	24331	2024-09-24	2021-06-29	4.4	5.41	—	4.3	0.002	0.34	0.0	0.04	4.36	0.00	2.248	3.50	0.00	9.1	90.3	0.6	-4.49	0.78	0.62	—	4.3	0.003	0.57	0.0	0.04	9.23	0.00	2.353	6.86	0.00	4.6	95.4	0.0	0.33	2.39	0.91	0.84	—	7727	505	1	0	0	0	3939	logfile
✔	6SLU	10240	2024-09-25	2019-08-20	4.7	4.88	4.61	4.8	0.004	0.64	0.0	0.04	9.23	0.00	1.454	9.87	0.18	1.3	98.7	0.0	-1.03	0.69	0.77	—	4.7	0.004	0.83	0.0	0.05	13.05	0.01	2.360	17.48	0.00	3.0	97.0	0.0	0.00	1.23	0.73	0.81	—	10336	1320	6	0	0	0	0	logfile
✔	6oG3	20051	2024-09-23	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.005	1.11	0.0	0.00	8.01	0.00	2.615	51.00	0.00	13.0	87.0	0.0	-1.64	2.16	0.67	0.87	—	1215	396	4	0	9	0	0	logfile
✔	7YAM	33717	2024-09-24	2022-06-28	3.3	3.46	3.26	3.4	0.003	0.53	0.0	0.04	14.47	0.00	1.756	6.05	0.13	1.6	98.4	0.0	1.95	0.70	0.80	2.17	3.4	0.004	0.55	0.0	0.04	16.09	0.00	1.900	6.12	1.74	2.0	98.0	0.0	2.09	0.46	0.69	0.82	2.08	6672	871	2	0	2	0	0	logfile
✘	7C8D	30305	2024-09-25	2020-05-29	3.0	2.79	—	2.8	0.003	0.53	0.0	0.04	17.37	0.00	1.998	9.03	6.05	3.6	96.4	0.0	-2.80	0.71	0.76	3.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6359	792	3	0	1	0	0	logfile
✔	7MQH	23947	2024-09-29	2021-05-05	3.1	3.00	3.04	3.2	0.007	0.81	0.0	0.06	13.71	0.00	2.350	2.29	0.00	1.0	99.0	0.0	0.95	0.79	0.86	5.69	3.1	0.005	0.55	0.0	0.05	15.02	0.00	2.584	2.09	1.15	3.0	97.0	0.0	0.65	0.36	0.81	0.89	5.42	12736	1640	16	16	0	0	0	logfile
✔	7R9M	24329	2024-09-24	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.54	0.0	0.04	9.17	0.00	2.482	4.79	0.25	2.2	97.8	0.0	-0.26	1.71	0.86	0.79	—	7727	505	1	0	0	0	3939	logfile
✔	7X0A	32922	2024-09-26	2022-02-21	3.1	3.17	—	3.4	0.003	0.50	0.0	0.04	11.70	0.00	1.679	3.53	0.04	3.4	96.6	0.0	-3.71	0.71	0.62	0.78	3.1	0.005	0.80	0.0	0.05	16.23	0.00	2.356	14.36	2.23	4.6	95.4	0.0	0.12	1.70	0.75	0.71	0.52	61215	8019	16	0	0	0	0	logfile

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